Rroxscaffold_4G00300930

In Between Ring fingers

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
21290635 .. 21293011
2377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300930.1

Sequence Viewer

Length: 1011 bp
ATGCCAGAAGATACAATCAAAAGTTCAGCACCTCGTTTTCTACGCAGTTGTTTGTTACACTCCTTCAACGCAACGGCCATGCAGTCTGCTGTCTCAGCCTCTGCTCTTCTTCTTGATCTGGATGATACCTCCTTGTCAGCACTGATTCATCATGAGTCTGATGATCATGAAGATGAGATTCGCATCGATCCGGCAATGATATCAGATGCCAAATATGCAGAAGAGTTGCAGTTCCAAGAGGCTATAATGGCATCTTCTGCCTTCATTTCCCAAAACATGAGCAACATCGCGTCGTGTTCCTCATCAACTCTGACAATCCAAGCAACCCAAGCAGTCCCATCCAGTTCAACCCATGAAGTCCTTGACCCAGAAACCCAAACCCTATGTGGGATTTGTGTTGAAGTCAAAGAGAATAACCAGATGTTCTCAAATGATAGCTGTGCTCACTCCTTCTGCTCAGATTGCATAACCAGACAAGTAGCCGCAAAACTGGACGAGAGCTTTCACATTGTTTCCTGCCCCGGATTGGATTGCAAAGCAGTCCTCAAACTTGAGGATTGTACCCCAATTCTCCCCAAATTGGTTCTCGAAAGGTGGAATGATGCCCTCTGTGAAGCTCTGTTCGTGGGGTCGCAGAAACTCTACTGTCCTTTCAGTGATTGCTCAATGGTTTTGGTGATCGAGAACGAAGGAGAGACAGTGAGAGAGTCAGAGTGCCCTGCTTGCCATAGACTGTTCTGCGCCGGATGTCAGGTTCCGTGGCATCCTGGGGTTGATTGTGAGGAGTTTCAGATGCTTAACGAGGACGAGAGAGGGAGGGAAGATCTTATGGTCAATCAGCTTGCAAAGGAGAAGAAGTGGATGAGGTGCCCCAGGTGCCACTTTTTTGTGGAGAAGACTCAAGGTTGTTTGCACATTTCTTGCAGGTGCCAATTTGAGTTCTGTTATGGTTGTGGAGCAGAATGGACTAGTAACCATGGTGGGTGCCAGTCTCAGTGCAACATAAATTAA

Protein Analysis

336

Amino Acids

37.36

Weight (kDa)

4.72

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 199 - 260 1.9e-10 IBR domain, a half RING-finger domain
IBR PF01485 275 - 329 7.8e-08 IBR domain, a half RING-finger domain
IBR_1 PF22191 288 - 324 6.7e-07 IBR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 915
Acc36I ACCTGC 1 cut(s) 915
AccB1I GGYRCC 4 cut(s) 867, 876, 927, 984
AccII CGCG 1 cut(s) 290
AciI CCGC 1 cut(s) 483
AclWI GGATC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 75
AfaI GTAC 1 cut(s) 562
AfiI CCNNNNNNNGG 3 cut(s) 387, 526, 580
AgsI TTSAA 3 cut(s) 67, 348, 401
AhlI ACTAGT 1 cut(s) 968
AjnI CCWGG 2 cut(s) 766, 872
AloI GAACNNNNNNTCC 2 cut(s) 738, 770
AluBI AGCT 4 cut(s) 438, 501, 617, 841
AluI AGCT 4 cut(s) 438, 501, 617, 841
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 3 cut(s) 97, 689, 996
AlwI GGATC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 1 cut(s) 75
AspLEI GCGC 1 cut(s) 743
AsuC2I CCSGG 1 cut(s) 522
AsuHPI GGTGA 1 cut(s) 688
BaeGI GKGCMC 2 cut(s) 719, 872
BanI GGYRCC 4 cut(s) 867, 876, 927, 984
BbsI GAAGAC 1 cut(s) 902
Bbv12I GWGCWC 1 cut(s) 445
BccI CCATC 1 cut(s) 346
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 2 cut(s) 768, 874
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 1 cut(s) 522
BcoDI GTCTC 3 cut(s) 97, 689, 996
BcuI ACTAGT 1 cut(s) 968
BfaI CTAG 1 cut(s) 969
BfuAI ACCTGC 1 cut(s) 915
BglII AGATCT 1 cut(s) 823
BisI GCNGC 1 cut(s) 483
BlsI GCNGC 1 cut(s) 484
Bme1390I CCNGG 3 cut(s) 522, 768, 874
BmiI GGNNCC 5 cut(s) 756, 869, 878, 929, 986
BmrFI CCNGG 3 cut(s) 522, 768, 874
BmsI GCATC 6 cut(s) 192, 196, 260, 592, 772, 783
BpiI GAAGAC 1 cut(s) 902
BpuEI CTTGAG 2 cut(s) 572, 885
BpuMI CCSGG 1 cut(s) 522
Bsa29I ATCGAT 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 182
BsaJI CCNNGG 5 cut(s) 520, 758, 767, 872, 976
BsaXI ACNNNNNCTCC 4 cut(s) 684, 714, 842, 872
Bsc4I CCNNNNNNNGG 3 cut(s) 387, 526, 580
Bse1I ACTGG 3 cut(s) 342, 495, 988
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 182
BseBI CCWGG 2 cut(s) 768, 874
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 5 cut(s) 520, 758, 767, 872, 976
BseGI GGATG 5 cut(s) 127, 338, 752, 763, 867
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 387, 526, 580
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 3 cut(s) 108, 471, 1007
BseNI ACTGG 3 cut(s) 342, 495, 988
BseRI GAGGAG 1 cut(s) 797
BseSI GKGCMC 2 cut(s) 719, 872
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 1 cut(s) 77
BshNI GGYRCC 4 cut(s) 867, 876, 927, 984
BshVI ATCGAT 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 3 cut(s) 191, 522, 744
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 3 cut(s) 387, 526, 580
BsmAI GTCTC 3 cut(s) 97, 689, 996
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 3 cut(s) 445, 719, 872
Bsp143I GATC 5 cut(s) 115, 163, 187, 678, 823
Bsp19I CCATGG 1 cut(s) 976
BspACI CCGC 1 cut(s) 483
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 3 cut(s) 107, 470, 1006
BspDI ATCGAT 1 cut(s) 186
BspFNI CGCG 1 cut(s) 290
BspHI TCATGA 2 cut(s) 151, 166
BspLI GGNNCC 5 cut(s) 756, 869, 878, 929, 986
BspMI ACCTGC 1 cut(s) 915
BspPI GGATC 1 cut(s) 182
BspQI GCTCTTC 1 cut(s) 111
BspT107I GGYRCC 4 cut(s) 867, 876, 927, 984
BsrDI GCAATG 1 cut(s) 201
BsrI ACTGG 3 cut(s) 342, 495, 988
BssECI CCNNGG 5 cut(s) 520, 758, 767, 872, 976
BssMI GATC 5 cut(s) 115, 163, 187, 678, 823
BssT1I CCWWGG 1 cut(s) 976
Bst2UI CCWGG 2 cut(s) 768, 874
Bst4CI ACNGT 3 cut(s) 647, 700, 735
Bst6I CTCTTC 2 cut(s) 111, 216
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 724, 843
BstDEI CTNAG 3 cut(s) 94, 457, 993
BstDSI CCRYGG 2 cut(s) 758, 976
BstF5I GGATG 5 cut(s) 127, 338, 752, 763, 867
BstFNI CGCG 1 cut(s) 290
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 5 cut(s) 118, 166, 190, 681, 826
BstMAI GTCTC 3 cut(s) 97, 689, 996
BstMBI GATC 5 cut(s) 115, 163, 187, 678, 823
BstMWI GCNNNNNNNGC 8 cut(s) 95, 215, 248, 257, 329, 462, 723, 876
BstNI CCWGG 2 cut(s) 768, 874
BstSCI CCNGG 3 cut(s) 520, 766, 872
BstSLI GKGCMC 2 cut(s) 719, 872
BstUI CGCG 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 902
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
Bsu15I ATCGAT 1 cut(s) 186
BsuRI GGCC 1 cut(s) 77
BsuTUI ATCGAT 1 cut(s) 186
BtgI CCRYGG 2 cut(s) 758, 976
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 5 cut(s) 127, 338, 752, 763, 867
BtsIMutI CAGTG 4 cut(s) 140, 661, 705, 1001
BveI ACCTGC 1 cut(s) 915
Cac8I GCNNGC 2 cut(s) 724, 843
CaiI CAGNNNCTG 1 cut(s) 101
CciI TCATGA 2 cut(s) 151, 166
CfoI GCGC 1 cut(s) 743
ClaI ATCGAT 1 cut(s) 186
CseI GACGC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 561
CviAII CATG 6 cut(s) 79, 152, 167, 277, 353, 977
CviJI RGCY 8 cut(s) 77, 98, 242, 438, 482, 501, 617, 841
CviKI_1 RGCY 8 cut(s) 77, 98, 242, 438, 482, 501, 617, 841
CviQI GTAC 1 cut(s) 561
DdeI CTNAG 3 cut(s) 94, 457, 993
DpnI GATC 5 cut(s) 117, 165, 189, 680, 825
DpnII GATC 5 cut(s) 115, 163, 187, 678, 823
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 2 cut(s) 111, 216
EarI CTCTTC 2 cut(s) 111, 216
Eco130I CCWWGG 1 cut(s) 976
Eco32I GATATC 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 766, 872
EcoRV GATATC 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 976
ErhI CCWWGG 1 cut(s) 976
FaeI CATG 6 cut(s) 82, 155, 170, 280, 356, 980
FaqI GGGAC 1 cut(s) 320
FatI CATG 6 cut(s) 78, 151, 166, 276, 352, 976
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 483
FokI GGATG 5 cut(s) 134, 325, 750, 759, 874
Fsp4HI GCNGC 1 cut(s) 483
FspBI CTAG 1 cut(s) 969
GlaI GCGC 1 cut(s) 742
GluI GCNGC 1 cut(s) 483
HaeIII GGCC 1 cut(s) 77
HapII CCGG 3 cut(s) 191, 522, 744
HgaI GACGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 743
Hin1II CATG 6 cut(s) 82, 155, 170, 280, 356, 980
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HinfI GANTC 5 cut(s) 145, 155, 178, 707, 898
HpaII CCGG 3 cut(s) 191, 522, 744
HphI GGTGA 1 cut(s) 688
Hpy188I TCNGA 6 cut(s) 160, 205, 312, 460, 712, 792
Hpy188III TCNNGA 6 cut(s) 113, 119, 152, 167, 587, 682
Hpy99I CGWCG 1 cut(s) 295
HpyAV CCTTC 4 cut(s) 73, 271, 460, 683
HpyCH4III ACNGT 3 cut(s) 647, 700, 735
HpyCH4V TGCA 9 cut(s) 82, 218, 229, 465, 534, 845, 913, 924, 999
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 215, 248, 257, 329, 462, 723, 876
HpyF3I CTNAG 3 cut(s) 94, 457, 993
Hsp92II CATG 6 cut(s) 82, 155, 170, 280, 356, 980
HspAI GCGC 1 cut(s) 741
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 5 cut(s) 115, 163, 187, 678, 823
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 956
LweI GCATC 6 cut(s) 192, 196, 260, 592, 772, 783
MaeI CTAG 1 cut(s) 969
MaeIII GTNAC 2 cut(s) 54, 971
MalI GATC 5 cut(s) 117, 165, 189, 680, 825
MboI GATC 5 cut(s) 115, 163, 187, 678, 823
MboII GAAGA 9 cut(s) 20, 98, 101, 182, 233, 246, 833, 865, 907
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 3 cut(s) 445, 719, 872
MluCI AATT 4 cut(s) 567, 578, 932, 1006
MlyI GAGTC 3 cut(s) 164, 716, 892
MseI TTAA 2 cut(s) 798, 1009
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 3 cut(s) 191, 522, 744
MspR9I CCNGG 3 cut(s) 522, 768, 874
MvaI CCWGG 2 cut(s) 768, 874
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 8 cut(s) 95, 215, 248, 257, 329, 462, 723, 876
NciI CCSGG 1 cut(s) 522
NcoI CCATGG 1 cut(s) 976
NdeII GATC 5 cut(s) 115, 163, 187, 678, 823
NlaIII CATG 6 cut(s) 82, 155, 170, 280, 356, 980
NlaIV GGNNCC 5 cut(s) 756, 869, 878, 929, 986
PagI TCATGA 2 cut(s) 151, 166
PaqCI CACCTGC 1 cut(s) 915
PciSI GCTCTTC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 145, 178
PkrI GCNGC 1 cut(s) 484
PleI GAGTC 3 cut(s) 163, 715, 892
PpsI GAGTC 3 cut(s) 163, 715, 892
Psp6I CCWGG 2 cut(s) 766, 872
PspGI CCWGG 2 cut(s) 766, 872
PspN4I GGNNCC 5 cut(s) 756, 869, 878, 929, 986
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 823
RsaI GTAC 1 cut(s) 562
RsaNI GTAC 1 cut(s) 561
RseI CAYNNNNRTG 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 798, 1009
SatI GCNGC 1 cut(s) 483
Sau3AI GATC 5 cut(s) 115, 163, 187, 678, 823
SchI GAGTC 3 cut(s) 164, 716, 892
ScrFI CCNGG 3 cut(s) 522, 768, 874
SduI GDGCHC 3 cut(s) 445, 719, 872
SfaNI GCATC 6 cut(s) 192, 196, 260, 592, 772, 783
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 2 cut(s) 551, 900
SmoI CTYRAG 2 cut(s) 551, 900
SpeI ACTAGT 1 cut(s) 968
Sse9I AATT 4 cut(s) 567, 578, 932, 1006
SsiI CCGC 1 cut(s) 483
SspMI CTAG 1 cut(s) 969
StyD4I CCNGG 3 cut(s) 520, 766, 872
StyI CCWWGG 1 cut(s) 976
TaaI ACNGT 3 cut(s) 647, 700, 735
TaqI TCGA 3 cut(s) 186, 588, 681
TasI AATT 4 cut(s) 567, 578, 932, 1006
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 2 cut(s) 145, 178
Tru1I TTAA 2 cut(s) 798, 1009
Tru9I TTAA 2 cut(s) 798, 1009
TscAI CASTG 4 cut(s) 147, 661, 705, 1001
TspDTI ATGAA 4 cut(s) 137, 183, 253, 369
TspGWI ACGGA 1 cut(s) 747
TspRI CASTG 4 cut(s) 147, 661, 705, 1001
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XspI CTAG 1 cut(s) 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.