Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

4357690 .. 4358556

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0056000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGTAAAAAACTTACCAACTAGGATAGGTGGGAGTAAGATCGTAATTACCAGTCGGAATTCTGCTGTGACGTCTCTTCTACCTGGCCGCTATGCGGTGCATAGGCTTGATTTAAGTGGCGGGTTGTCATTCAAAGAGGCGGAGAACCTGTTCTGCAAGAAGGTTTTTCCTGAATCCAATGGAAATTGGCCACTACATATTTCACTCGACACTCATAATTGGACCCAAAAAGTCCTCTCCAAGTGCGAAGGCATGCCTCTTCCCATTTCTGCAGTAGGTAATTTTCTTCATGGTCGGAGCGATCTTTCTCCACTCCATTGGCATAAGCTGGATATTAACATCGCCTCCGAATTGTGTACAAAGGGTTCAGATCTTTCCATCATTCGCAGTAATTTGGAGCCGAGTTATAGAGGTCTTCCGAGCCATCTCAGAAATTGTTTCTTGTACTTCAGCATGTTTCCCGAAGGCTACGAAATCAGCCGTGAGAGGCTCAAACGACTGTGGATTGCAGAGAATTTCATCATCGCAGGAAAACCACAGGTCACAGAGGAATGGCATGCAGAAAATTATCTCAATGAACTGGTGGAAAGAAATTTGGTTCGGGTGTGCAATGCCAATGGGGATCATAGAGTAAGAAGTTGTCGCGTTTTGGAATATGTTCGTTTGATCAATAGTTTAAGGCGGAAGGAATTCCTCACCATTTCCGAGCCAGACTACACACCTGCAGATAACAGAAGTATTCAACGGCTGTCTGCTTATGAGGGTGGTATTGATTCTCTAAAGGATTTCAATGATGGCGTTCGCAGCTTTCTAGGGTCCAGAGAGGCAAGTATTCCTGAGATTGAAATGGTCCTAAAATCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

288

Amino Acids

32.73

Weight (kDa)

8.7

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	152 - 218	5.2e-14	Disease resistance protein Winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	730
AatII	GACGTC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	730
AccII	CGCG	1 cut(s)	645
AciI	CCGC	5 cut(s)	88, 95, 120, 140, 682
AclWI	GGATC	1 cut(s)	630
AcoI	YGGCCR	2 cut(s)	85, 188
AcsI	RAATTY	4 cut(s)	58, 514, 592, 689
AcuI	CTGAAG	1 cut(s)	433
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	2 cut(s)	358, 446
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	4 cut(s)	133, 743, 790, 845
AjnI	CCWGG	1 cut(s)	82
AloI	GAACNNNNNNTCC	2 cut(s)	134, 166
AluBI	AGCT	2 cut(s)	328, 807
AluI	AGCT	2 cut(s)	328, 807
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	630
AoxI	GGCC	2 cut(s)	85, 188
ApeKI	GCWGC	1 cut(s)	804
ApoI	RAATTY	4 cut(s)	58, 514, 592, 689
Asp700I	GAANNNNTTC	3 cut(s)	149, 657, 689
AspS9I	GGNCC	3 cut(s)	222, 816, 850
AsuHPI	GGTGA	1 cut(s)	688
AvaII	GGWCC	3 cut(s)	222, 816, 850
BalI	TGGCCA	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	1 cut(s)	816
BccI	CCATC	3 cut(s)	386, 432, 788
BceAI	ACGGC	2 cut(s)	465, 761
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	1 cut(s)	666
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	2 cut(s)	21, 812
BfmI	CTRYAG	2 cut(s)	270, 723
BfuAI	ACCTGC	1 cut(s)	730
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	2 cut(s)	88, 805
BlsI	GCNGC	2 cut(s)	89, 806
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	3 cut(s)	222, 816, 850
BmgT120I	GGNCC	3 cut(s)	222, 816, 850
BmiI	GGNNCC	3 cut(s)	224, 399, 817
BmrFI	CCNGG	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	71
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	51, 585
Bse3DI	GCAATG	1 cut(s)	616
BseBI	CCWGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	442, 828
BseNI	ACTGG	2 cut(s)	51, 585
BseXI	GCAGC	1 cut(s)	816
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	2 cut(s)	87, 190
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	78
BsmBI	CGTCTC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	87, 190
Bsp1407I	TGTACA	1 cut(s)	356
Bsp143I	GATC	5 cut(s)	39, 301, 370, 622, 666
BspACI	CCGC	5 cut(s)	88, 95, 120, 140, 682
BspANI	GGCC	2 cut(s)	87, 190
BspCNI	CTCAG	2 cut(s)	441, 829
BspFNI	CGCG	1 cut(s)	645
BspLI	GGNNCC	3 cut(s)	224, 399, 817
BspMAI	CTGCAG	2 cut(s)	274, 727
BspMI	ACCTGC	1 cut(s)	730
BspPI	GGATC	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	616
BsrGI	TGTACA	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	51, 585
BssMI	GATC	5 cut(s)	39, 301, 370, 622, 666
BssNI	GRCGYC	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	501
Bst6I	CTCTTC	2 cut(s)	81, 264
BstACI	GRCGYC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	254, 558
BstDEI	CTNAG	2 cut(s)	428, 837
BstFNI	CGCG	1 cut(s)	645
BstKTI	GATC	5 cut(s)	42, 304, 373, 625, 669
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	5 cut(s)	39, 301, 370, 622, 666
BstMWI	GCNNNNNNNGC	1 cut(s)	804
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	3 cut(s)	256, 457, 560
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	2 cut(s)	270, 723
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	816
BstV2I	GAAGAC	1 cut(s)	407
BstX2I	RGATCY	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	87, 190
BtgZI	GCGATG	2 cut(s)	325, 508
BveI	ACCTGC	1 cut(s)	730
Cac8I	GCNNGC	2 cut(s)	254, 558
Cfr13I	GGNCC	3 cut(s)	222, 816, 850
Csp6I	GTAC	2 cut(s)	357, 445
CviAII	CATG	4 cut(s)	253, 290, 454, 557
CviQI	GTAC	2 cut(s)	357, 445
DdeI	CTNAG	2 cut(s)	428, 837
DpnI	GATC	5 cut(s)	41, 303, 372, 624, 668
DpnII	GATC	5 cut(s)	39, 301, 370, 622, 666
EaeI	YGGCCR	2 cut(s)	85, 188
Eam1104I	CTCTTC	2 cut(s)	81, 264
EarI	CTCTTC	2 cut(s)	81, 264
EciI	GGCGGA	2 cut(s)	155, 697
Eco47I	GGWCC	3 cut(s)	222, 816, 850
Eco57I	CTGAAG	1 cut(s)	433
EcoRI	GAATTC	2 cut(s)	58, 689
EcoRII	CCWGG	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	4 cut(s)	256, 293, 457, 560
FatI	CATG	4 cut(s)	252, 289, 453, 556
FauI	CCCGC	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	666
Fnu4HI	GCNGC	2 cut(s)	88, 805
Fsp4HI	GCNGC	2 cut(s)	88, 805
FspBI	CTAG	2 cut(s)	21, 812
GluI	GCNGC	2 cut(s)	88, 805
HaeIII	GGCC	2 cut(s)	87, 190
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	256, 293, 457, 560
HinfI	GANTC	2 cut(s)	173, 773
HphI	GGTGA	1 cut(s)	688
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	7 cut(s)	57, 297, 349, 370, 420, 431, 706
Hpy188III	TCNNGA	4 cut(s)	170, 461, 819, 836
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	4 cut(s)	154, 242, 458, 679
HpyCH4III	ACNGT	1 cut(s)	501
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	7 cut(s)	100, 156, 272, 509, 560, 609, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	804
HpyF3I	CTNAG	2 cut(s)	428, 837
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	4 cut(s)	256, 293, 457, 560
Ksp22I	TGATCA	1 cut(s)	666
Kzo9I	GATC	5 cut(s)	39, 301, 370, 622, 666
LmnI	GCTCC	2 cut(s)	297, 397
Lsp1109I	GCAGC	1 cut(s)	816
MaeI	CTAG	2 cut(s)	21, 812
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	67, 541
MalI	GATC	5 cut(s)	41, 303, 372, 624, 668
MboI	GATC	5 cut(s)	39, 301, 370, 622, 666
MboII	GAAGA	4 cut(s)	68, 251, 278, 407
MflI	RGATCY	1 cut(s)	370
MlsI	TGGCCA	1 cut(s)	190
MluNI	TGGCCA	1 cut(s)	190
MmeI	TCCRAC	2 cut(s)	35, 275
Mox20I	TGGCCA	1 cut(s)	190
MroXI	GAANNNNTTC	3 cut(s)	149, 657, 689
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	3 cut(s)	113, 336, 677
Msp20I	TGGCCA	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	1 cut(s)	804
NdeII	GATC	5 cut(s)	39, 301, 370, 622, 666
NlaIII	CATG	4 cut(s)	256, 293, 457, 560
NlaIV	GGNNCC	3 cut(s)	224, 399, 817
NmeAIII	GCCGAG	1 cut(s)	426
NmuCI	GTSAC	2 cut(s)	67, 541
NspI	RCATGY	3 cut(s)	256, 457, 560
PaeI	GCATGC	2 cut(s)	256, 560
PaqCI	CACCTGC	1 cut(s)	730
PdmI	GAANNNNTTC	3 cut(s)	149, 657, 689
PfeI	GAWTC	2 cut(s)	173, 773
PkrI	GCNGC	2 cut(s)	89, 806
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	3 cut(s)	224, 399, 817
PspPI	GGNCC	3 cut(s)	222, 816, 850
PsrI	GAACNNNNNNTAC	2 cut(s)	349, 381
PstI	CTGCAG	2 cut(s)	274, 727
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	2 cut(s)	358, 446
RsaNI	GTAC	2 cut(s)	357, 445
SaqAI	TTAA	3 cut(s)	113, 336, 677
SatI	GCNGC	2 cut(s)	88, 805
Sau3AI	GATC	5 cut(s)	39, 301, 370, 622, 666
Sau96I	GGNCC	3 cut(s)	222, 816, 850
ScrFI	CCNGG	1 cut(s)	84
SfcI	CTRYAG	2 cut(s)	270, 723
SinI	GGWCC	3 cut(s)	222, 816, 850
SphI	GCATGC	2 cut(s)	256, 560
SsiI	CCGC	5 cut(s)	88, 95, 120, 140, 682
SspMI	CTAG	2 cut(s)	21, 812
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	501
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	207
TatI	WGTACW	2 cut(s)	356, 444
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	173, 773
Tru1I	TTAA	3 cut(s)	113, 336, 677
Tru9I	TTAA	3 cut(s)	113, 336, 677
TseFI	GTSAC	2 cut(s)	67, 541
TseI	GCWGC	1 cut(s)	804
Tsp45I	GTSAC	2 cut(s)	67, 541
TspDTI	ATGAA	3 cut(s)	278, 508, 591
VpaK11BI	GGWCC	3 cut(s)	222, 816, 850
XapI	RAATTY	4 cut(s)	58, 514, 592, 689
XceI	RCATGY	3 cut(s)	256, 457, 560
XmnI	GAANNNNTTC	3 cut(s)	149, 657, 689
XspI	CTAG	2 cut(s)	21, 812
ZraI	GACGTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.