E3 ubiquitin-protein ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| IBR | PF01485 | 179 - 235 | 2.3e-10 | IBR domain, a half RING-finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 77 |
| AatII | GACGTC | 1 cut(s) | 81 |
| Acc36I | ACCTGC | 1 cut(s) | 840 |
| Acc65I | GGTACC | 1 cut(s) | 259 |
| AccB1I | GGYRCC | 3 cut(s) | 259, 505, 792 |
| AccBSI | CCGCTC | 2 cut(s) | 478, 492 |
| AccII | CGCG | 2 cut(s) | 464, 545 |
| AclWI | GGATC | 2 cut(s) | 127, 565 |
| AcoI | YGGCCR | 1 cut(s) | 271 |
| AcvI | CACGTG | 1 cut(s) | 376 |
| AcyI | GRCGYC | 2 cut(s) | 78, 506 |
| AfaI | GTAC | 4 cut(s) | 261, 344, 380, 485 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 269, 583 |
| AflIII | ACRYGT | 1 cut(s) | 375 |
| AgsI | TTSAA | 3 cut(s) | 47, 223, 249 |
| AjiI | CACGTC | 1 cut(s) | 92 |
| AjnI | CCWGG | 1 cut(s) | 765 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 203, 235 |
| AluBI | AGCT | 5 cut(s) | 337, 402, 418, 721, 801 |
| AluI | AGCT | 5 cut(s) | 337, 402, 418, 721, 801 |
| Alw21I | GWGCWC | 2 cut(s) | 281, 670 |
| Alw26I | GTCTC | 2 cut(s) | 98, 129 |
| AlwI | GGATC | 2 cut(s) | 127, 565 |
| Ama87I | CYCGRG | 3 cut(s) | 338, 473, 796 |
| AoxI | GGCC | 2 cut(s) | 271, 466 |
| ApeKI | GCWGC | 3 cut(s) | 369, 499, 801 |
| Asp718I | GGTACC | 1 cut(s) | 259 |
| AspLEI | GCGC | 5 cut(s) | 231, 326, 464, 508, 772 |
| AspS9I | GGNCC | 1 cut(s) | 466 |
| AsuC2I | CCSGG | 4 cut(s) | 41, 117, 253, 270 |
| AsuHPI | GGTGA | 2 cut(s) | 283, 637 |
| AsuII | TTCGAA | 1 cut(s) | 201 |
| AvaI | CYCGRG | 3 cut(s) | 338, 473, 796 |
| BaeGI | GKGCMC | 1 cut(s) | 797 |
| BanI | GGYRCC | 3 cut(s) | 259, 505, 792 |
| BbrPI | CACGTG | 1 cut(s) | 376 |
| Bbv12I | GWGCWC | 2 cut(s) | 281, 670 |
| BbvI | GCAGC | 3 cut(s) | 356, 486, 788 |
| BccI | CCATC | 4 cut(s) | 65, 158, 605, 691 |
| BciT130I | CCWGG | 1 cut(s) | 767 |
| BcnI | CCSGG | 4 cut(s) | 41, 117, 253, 270 |
| BcoDI | GTCTC | 2 cut(s) | 98, 129 |
| BfoI | RGCGCY | 1 cut(s) | 509 |
| BfuAI | ACCTGC | 1 cut(s) | 840 |
| BisI | GCNGC | 5 cut(s) | 144, 370, 490, 500, 802 |
| BlsI | GCNGC | 5 cut(s) | 145, 371, 491, 501, 803 |
| BmcAI | AGTACT | 1 cut(s) | 485 |
| Bme1390I | CCNGG | 5 cut(s) | 41, 117, 253, 270, 767 |
| BmeT110I | CYCGRG | 3 cut(s) | 338, 473, 796 |
| BmgBI | CACGTC | 1 cut(s) | 92 |
| BmgT120I | GGNCC | 1 cut(s) | 466 |
| BmiI | GGNNCC | 5 cut(s) | 169, 261, 507, 764, 794 |
| BmrFI | CCNGG | 5 cut(s) | 41, 117, 253, 270, 767 |
| BpmI | CTGGAG | 1 cut(s) | 805 |
| Bpu14I | TTCGAA | 1 cut(s) | 201 |
| BpuMI | CCSGG | 4 cut(s) | 41, 117, 253, 270 |
| Bsa29I | ATCGAT | 1 cut(s) | 408 |
| BsaAI | YACGTR | 1 cut(s) | 376 |
| BsaHI | GRCGYC | 2 cut(s) | 78, 506 |
| BsaJI | CCNNGG | 2 cut(s) | 39, 115 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 20, 50 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 269, 583 |
| Bse118I | RCCGGY | 2 cut(s) | 502, 508 |
| Bse1I | ACTGG | 3 cut(s) | 274, 741, 788 |
| Bse3DI | GCAATG | 3 cut(s) | 540, 644, 646 |
| BseBI | CCWGG | 1 cut(s) | 767 |
| BseCI | ATCGAT | 1 cut(s) | 408 |
| BseDI | CCNNGG | 2 cut(s) | 39, 115 |
| BseGI | GGATG | 6 cut(s) | 81, 169, 663, 702, 736, 754 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 269, 583 |
| BseMI | GCAATG | 3 cut(s) | 540, 644, 646 |
| BseMII | CTCAG | 2 cut(s) | 683, 736 |
| BseNI | ACTGG | 3 cut(s) | 274, 741, 788 |
| BseRI | GAGGAG | 2 cut(s) | 13, 802 |
| BseSI | GKGCMC | 1 cut(s) | 797 |
| BseXI | GCAGC | 3 cut(s) | 356, 486, 788 |
| Bsh1236I | CGCG | 2 cut(s) | 464, 545 |
| Bsh1285I | CGRYCG | 1 cut(s) | 360 |
| BshFI | GGCC | 2 cut(s) | 273, 468 |
| BshNI | GGYRCC | 3 cut(s) | 259, 505, 792 |
| BshVI | ATCGAT | 1 cut(s) | 408 |
| BsiEI | CGRYCG | 1 cut(s) | 360 |
| BsiHKAI | GWGCWC | 2 cut(s) | 281, 670 |
| BsiHKCI | CYCGRG | 3 cut(s) | 338, 473, 796 |
| BsiSI | CCGG | 6 cut(s) | 41, 117, 252, 270, 503, 509 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 269, 583 |
| BsmAI | GTCTC | 2 cut(s) | 98, 129 |
| BsmBI | CGTCTC | 2 cut(s) | 98, 129 |
| BsnI | GGCC | 2 cut(s) | 273, 468 |
| BsoBI | CYCGRG | 3 cut(s) | 338, 473, 796 |
| Bsp119I | TTCGAA | 1 cut(s) | 201 |
| Bsp1286I | GDGCHC | 3 cut(s) | 281, 670, 797 |
| Bsp143I | GATC | 3 cut(s) | 119, 357, 557 |
| BspANI | GGCC | 2 cut(s) | 273, 468 |
| BspCNI | CTCAG | 2 cut(s) | 682, 735 |
| BspDI | ATCGAT | 1 cut(s) | 408 |
| BspFNI | CGCG | 2 cut(s) | 464, 545 |
| BspHI | TCATGA | 1 cut(s) | 854 |
| BspLI | GGNNCC | 5 cut(s) | 169, 261, 507, 764, 794 |
| BspMI | ACCTGC | 1 cut(s) | 840 |
| BspPI | GGATC | 2 cut(s) | 127, 565 |
| BspT104I | TTCGAA | 1 cut(s) | 201 |
| BspT107I | GGYRCC | 3 cut(s) | 259, 505, 792 |
| BsrBI | CCGCTC | 2 cut(s) | 478, 492 |
| BsrDI | GCAATG | 3 cut(s) | 540, 644, 646 |
| BsrFI | RCCGGY | 2 cut(s) | 502, 508 |
| BsrI | ACTGG | 3 cut(s) | 274, 741, 788 |
| BssAI | RCCGGY | 2 cut(s) | 502, 508 |
| BssECI | CCNNGG | 2 cut(s) | 39, 115 |
| BssMI | GATC | 3 cut(s) | 119, 357, 557 |
| BssNI | GRCGYC | 2 cut(s) | 78, 506 |
| Bst2UI | CCWGG | 1 cut(s) | 767 |
| BstACI | GRCGYC | 2 cut(s) | 78, 506 |
| BstBAI | YACGTR | 1 cut(s) | 376 |
| BstBI | TTCGAA | 1 cut(s) | 201 |
| BstC8I | GCNNGC | 4 cut(s) | 466, 470, 504, 644 |
| BstDEI | CTNAG | 2 cut(s) | 669, 722 |
| BstF5I | GGATG | 6 cut(s) | 81, 169, 663, 702, 736, 754 |
| BstFNI | CGCG | 2 cut(s) | 464, 545 |
| BstH2I | RGCGCY | 1 cut(s) | 509 |
| BstHHI | GCGC | 5 cut(s) | 231, 326, 464, 508, 772 |
| BstKTI | GATC | 3 cut(s) | 122, 360, 560 |
| BstMAI | GTCTC | 2 cut(s) | 98, 129 |
| BstMBI | GATC | 3 cut(s) | 119, 357, 557 |
| BstMCI | CGRYCG | 1 cut(s) | 360 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 321, 390, 399, 505, 643, 648, 801 |
| BstNI | CCWGG | 1 cut(s) | 767 |
| BstNSI | RCATGY | 1 cut(s) | 692 |
| BstSCI | CCNGG | 5 cut(s) | 39, 115, 251, 268, 765 |
| BstSLI | GKGCMC | 1 cut(s) | 797 |
| BstUI | CGCG | 2 cut(s) | 464, 545 |
| BstV1I | GCAGC | 3 cut(s) | 356, 486, 788 |
| Bsu15I | ATCGAT | 1 cut(s) | 408 |
| BsuRI | GGCC | 2 cut(s) | 273, 468 |
| BsuTUI | ATCGAT | 1 cut(s) | 408 |
| BtrI | CACGTC | 1 cut(s) | 92 |
| BtsCI | GGATG | 6 cut(s) | 81, 169, 663, 702, 736, 754 |
| BtsIMutI | CAGTG | 4 cut(s) | 281, 677, 730, 748 |
| BveI | ACCTGC | 1 cut(s) | 840 |
| Cac8I | GCNNGC | 4 cut(s) | 466, 470, 504, 644 |
| CciI | TCATGA | 1 cut(s) | 854 |
| CfoI | GCGC | 5 cut(s) | 231, 326, 464, 508, 772 |
| Cfr10I | RCCGGY | 2 cut(s) | 502, 508 |
| Cfr13I | GGNCC | 1 cut(s) | 466 |
| ClaI | ATCGAT | 1 cut(s) | 408 |
| CseI | GACGC | 3 cut(s) | 80, 382, 551 |
| Csp6I | GTAC | 4 cut(s) | 260, 343, 379, 484 |
| CviAII | CATG | 4 cut(s) | 598, 689, 841, 855 |
| CviQI | GTAC | 4 cut(s) | 260, 343, 379, 484 |
| DdeI | CTNAG | 2 cut(s) | 669, 722 |
| DinI | GGCGCC | 1 cut(s) | 507 |
| DpnI | GATC | 3 cut(s) | 121, 359, 559 |
| DpnII | GATC | 3 cut(s) | 119, 357, 557 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 77 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 77 |
| EaeI | YGGCCR | 1 cut(s) | 271 |
| EciI | GGCGGA | 1 cut(s) | 583 |
| Eco72I | CACGTG | 1 cut(s) | 376 |
| Eco88I | CYCGRG | 3 cut(s) | 338, 473, 796 |
| EcoRII | CCWGG | 1 cut(s) | 765 |
| EgeI | GGCGCC | 1 cut(s) | 507 |
| EheI | GGCGCC | 1 cut(s) | 507 |
| Esp3I | CGTCTC | 2 cut(s) | 98, 129 |
| FaeI | CATG | 4 cut(s) | 601, 692, 844, 858 |
| FaiI | YATR | 7 cut(s) | 599, 609, 690, 755, 813, 842, 856 |
| FatI | CATG | 4 cut(s) | 597, 688, 840, 854 |
| FauI | CCCGC | 5 cut(s) | 148, 224, 457, 471, 651 |
| Fnu4HI | GCNGC | 5 cut(s) | 144, 370, 490, 500, 802 |
| FokI | GGATG | 6 cut(s) | 68, 176, 670, 709, 743, 761 |
| Fsp4HI | GCNGC | 5 cut(s) | 144, 370, 490, 500, 802 |
| GlaI | GCGC | 5 cut(s) | 230, 325, 463, 507, 771 |
| GluI | GCNGC | 5 cut(s) | 144, 370, 490, 500, 802 |
| GsuI | CTGGAG | 1 cut(s) | 805 |
| HaeII | RGCGCY | 1 cut(s) | 509 |
| HaeIII | GGCC | 2 cut(s) | 273, 468 |
| HapII | CCGG | 6 cut(s) | 41, 117, 252, 270, 503, 509 |
| HgaI | GACGC | 3 cut(s) | 80, 382, 551 |
| HhaI | GCGC | 5 cut(s) | 231, 326, 464, 508, 772 |
| Hin1I | GRCGYC | 2 cut(s) | 78, 506 |
| Hin1II | CATG | 4 cut(s) | 601, 692, 844, 858 |
| Hin6I | GCGC | 5 cut(s) | 229, 324, 462, 506, 770 |
| HinP1I | GCGC | 5 cut(s) | 229, 324, 462, 506, 770 |
| HinfI | GANTC | 6 cut(s) | 184, 189, 284, 347, 410, 632 |
| HpaII | CCGG | 6 cut(s) | 41, 117, 252, 270, 503, 509 |
| HphI | GGTGA | 2 cut(s) | 283, 637 |
| Hpy166II | GTNNAC | 1 cut(s) | 379 |
| Hpy188I | TCNGA | 7 cut(s) | 163, 172, 283, 388, 456, 562, 717 |
| Hpy188III | TCNNGA | 6 cut(s) | 52, 355, 361, 517, 584, 855 |
| Hpy8I | GTNNAC | 1 cut(s) | 379 |
| Hpy99I | CGWCG | 9 cut(s) | 65, 68, 71, 74, 176, 179, 182, 332, 710 |
| HpyAV | CCTTC | 4 cut(s) | 117, 157, 316, 523 |
| HpyCH4IV | ACGT | 3 cut(s) | 78, 91, 375 |
| HpyCH4V | TGCA | 2 cut(s) | 804, 849 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 321, 390, 399, 505, 643, 648, 801 |
| HpyF3I | CTNAG | 2 cut(s) | 669, 722 |
| HpySE526I | ACGT | 3 cut(s) | 78, 91, 375 |
| Hsp92I | GRCGYC | 2 cut(s) | 78, 506 |
| Hsp92II | CATG | 4 cut(s) | 601, 692, 844, 858 |
| HspAI | GCGC | 5 cut(s) | 229, 324, 462, 506, 770 |
| KasI | GGCGCC | 1 cut(s) | 505 |
| KpnI | GGTACC | 1 cut(s) | 263 |
| KroI | GCCGGC | 1 cut(s) | 502 |
| KroNI | GCCGGC | 1 cut(s) | 504 |
| Kzo9I | GATC | 3 cut(s) | 119, 357, 557 |
| LmnI | GCTCC | 6 cut(s) | 173, 284, 389, 423, 596, 839 |
| Lsp1109I | GCAGC | 3 cut(s) | 356, 486, 788 |
| MaeII | ACGT | 3 cut(s) | 78, 91, 375 |
| MaeIII | GTNAC | 1 cut(s) | 539 |
| MalI | GATC | 3 cut(s) | 121, 359, 559 |
| MbiI | CCGCTC | 2 cut(s) | 478, 492 |
| MboI | GATC | 3 cut(s) | 119, 357, 557 |
| MhlI | GDGCHC | 3 cut(s) | 281, 670, 797 |
| MluCI | AATT | 2 cut(s) | 364, 457 |
| Mly113I | GGCGCC | 1 cut(s) | 506 |
| MlyI | GAGTC | 3 cut(s) | 198, 278, 641 |
| MmeI | TCCRAC | 3 cut(s) | 195, 306, 411 |
| MroNI | GCCGGC | 1 cut(s) | 502 |
| MspI | CCGG | 6 cut(s) | 41, 117, 252, 270, 503, 509 |
| MspR9I | CCNGG | 5 cut(s) | 41, 117, 253, 270, 767 |
| MvaI | CCWGG | 1 cut(s) | 767 |
| MvnI | CGCG | 2 cut(s) | 464, 545 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 321, 390, 399, 505, 643, 648, 801 |
| NaeI | GCCGGC | 1 cut(s) | 504 |
| NarI | GGCGCC | 1 cut(s) | 506 |
| NciI | CCSGG | 4 cut(s) | 41, 117, 253, 270 |
| NdeII | GATC | 3 cut(s) | 119, 357, 557 |
| NgoMIV | GCCGGC | 1 cut(s) | 502 |
| NlaIII | CATG | 4 cut(s) | 601, 692, 844, 858 |
| NlaIV | GGNNCC | 5 cut(s) | 169, 261, 507, 764, 794 |
| NmuCI | GTSAC | 1 cut(s) | 539 |
| NspI | RCATGY | 1 cut(s) | 692 |
| NspV | TTCGAA | 1 cut(s) | 201 |
| PaeR7I | CTCGAG | 1 cut(s) | 473 |
| PagI | TCATGA | 1 cut(s) | 854 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 66, 75 |
| PdiI | GCCGGC | 1 cut(s) | 504 |
| PfeI | GAWTC | 3 cut(s) | 184, 347, 410 |
| PflFI | GACNNNGTC | 1 cut(s) | 392 |
| PkrI | GCNGC | 5 cut(s) | 145, 371, 491, 501, 803 |
| Ple19I | CGATCG | 1 cut(s) | 360 |
| PleI | GAGTC | 3 cut(s) | 197, 278, 640 |
| PluTI | GGCGCC | 1 cut(s) | 509 |
| PmaCI | CACGTG | 1 cut(s) | 376 |
| PmlI | CACGTG | 1 cut(s) | 376 |
| PpsI | GAGTC | 3 cut(s) | 197, 278, 640 |
| Ppu21I | YACGTR | 1 cut(s) | 376 |
| Psp6I | CCWGG | 1 cut(s) | 765 |
| PspCI | CACGTG | 1 cut(s) | 376 |
| PspGI | CCWGG | 1 cut(s) | 765 |
| PspN4I | GGNNCC | 5 cut(s) | 169, 261, 507, 764, 794 |
| PspPI | GGNCC | 1 cut(s) | 466 |
| PspXI | VCTCGAGB | 1 cut(s) | 473 |
| PsyI | GACNNNGTC | 1 cut(s) | 392 |
| PvuI | CGATCG | 1 cut(s) | 360 |
| RsaI | GTAC | 4 cut(s) | 261, 344, 380, 485 |
| RsaNI | GTAC | 4 cut(s) | 260, 343, 379, 484 |
| SatI | GCNGC | 5 cut(s) | 144, 370, 490, 500, 802 |
| Sau3AI | GATC | 3 cut(s) | 119, 357, 557 |
| Sau96I | GGNCC | 1 cut(s) | 466 |
| ScaI | AGTACT | 1 cut(s) | 485 |
| SchI | GAGTC | 3 cut(s) | 198, 278, 641 |
| ScrFI | CCNGG | 5 cut(s) | 41, 117, 253, 270, 767 |
| SduI | GDGCHC | 3 cut(s) | 281, 670, 797 |
| SfoI | GGCGCC | 1 cut(s) | 507 |
| Sfr274I | CTCGAG | 1 cut(s) | 473 |
| SfuI | TTCGAA | 1 cut(s) | 201 |
| SgrAI | CRCCGGYG | 1 cut(s) | 508 |
| SlaI | CTCGAG | 1 cut(s) | 473 |
| SmlI | CTYRAG | 1 cut(s) | 473 |
| SmoI | CTYRAG | 1 cut(s) | 473 |
| Sse9I | AATT | 2 cut(s) | 364, 457 |
| SspDI | GGCGCC | 1 cut(s) | 505 |
| StyD4I | CCNGG | 5 cut(s) | 39, 115, 251, 268, 765 |
| TaiI | ACGT | 3 cut(s) | 81, 94, 378 |
| TaqI | TCGA | 9 cut(s) | 60, 153, 187, 201, 360, 408, 474, 516, 816 |
| TasI | AATT | 2 cut(s) | 364, 457 |
| TatI | WGTACW | 2 cut(s) | 378, 483 |
| TauI | GCSGC | 2 cut(s) | 146, 492 |
| TfiI | GAWTC | 3 cut(s) | 184, 347, 410 |
| TscAI | CASTG | 4 cut(s) | 281, 677, 730, 748 |
| TseFI | GTSAC | 1 cut(s) | 539 |
| TseI | GCWGC | 3 cut(s) | 369, 499, 801 |
| Tsp45I | GTSAC | 1 cut(s) | 539 |
| TspDTI | ATGAA | 2 cut(s) | 139, 857 |
| TspGWI | ACGGA | 1 cut(s) | 431 |
| TspRI | CASTG | 4 cut(s) | 281, 677, 730, 748 |
| Tth111I | GACNNNGTC | 1 cut(s) | 392 |
| XceI | RCATGY | 1 cut(s) | 692 |
| XhoI | CTCGAG | 1 cut(s) | 473 |
| ZraI | GACGTC | 1 cut(s) | 79 |
| ZrmI | AGTACT | 1 cut(s) | 485 |