Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004189.1

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

185535 .. 186234

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004189.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgttgatcgacgttgggccagagatagtgaggaaatcggagtgccctaattgtaaaagattgttctgtgcgcagtgtaaggtcccttggcacgccaggattacttgtgccgagtttaagaggcggaataaggatgatactgaaaaggatgatcttgttatggagaaacttgcttacaagaagcactggagaaagttcccaacgtgtgggatctatgtagaaagatcaggaggctgcacaacaatacgatgcaggtgcgggacttgtttcaacttccattgtggacgactgggttgtcctttttgtggaaaacacagaaagaaagattctaaaactatgggctacttcgtattcatgaaggagttcagaaggattcagcgggaccaggggggaccctatactgctaaacttgctattgagaaatggagatccatgtcttgttctgaaaaaaagccctatgagaacccagagatggaaccgattagaatctactcggtgcggtcaaagatgtcgagtaaagaaggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

175

Amino Acids

20.52

Weight (kDa)

9.49

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	243
AasI	GACNNNNNNGTC	1 cut(s)	294
Acc16I	TGCGCA	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	206
AciI	CCGC	4 cut(s)	124, 258, 379, 499
AclWI	GGATC	2 cut(s)	218, 423
AfiI	CCNNNNNNNGG	3 cut(s)	206, 305, 472
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	2 cut(s)	95, 384
AlwI	GGATC	2 cut(s)	218, 423
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	4 cut(s)	17, 82, 382, 392
AvaII	GGWCC	3 cut(s)	82, 382, 392
BaeGI	GKGCMC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	1 cut(s)	466
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BciT130I	CCWGG	2 cut(s)	97, 386
BfuAI	ACCTGC	1 cut(s)	243
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
Bme1390I	CCNGG	2 cut(s)	97, 386
Bme18I	GGWCC	3 cut(s)	82, 382, 392
BmgT120I	GGNCC	4 cut(s)	17, 82, 382, 392
BmiI	GGNNCC	5 cut(s)	84, 383, 393, 394, 477
BmrFI	CCNGG	2 cut(s)	97, 386
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	485
BsaJI	CCNNGG	2 cut(s)	86, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 305, 472
Bse1I	ACTGG	2 cut(s)	191, 294
Bse8I	GATNNNNATC	1 cut(s)	485
BseBI	CCWGG	2 cut(s)	97, 386
BseDI	CCNNGG	2 cut(s)	86, 385
BseGI	GGATG	2 cut(s)	139, 154
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	3 cut(s)	206, 305, 472
BseNI	ACTGG	2 cut(s)	191, 294
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	220
BshFI	GGCC	1 cut(s)	19
BslFI	GGGAC	4 cut(s)	68, 274, 395, 405
BslI	CCNNNNNNNGG	3 cut(s)	206, 305, 472
BsmFI	GGGAC	4 cut(s)	68, 274, 395, 405
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	5 cut(s)	6, 151, 210, 224, 428
BspACI	CCGC	4 cut(s)	124, 258, 379, 499
BspANI	GGCC	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	5 cut(s)	84, 383, 393, 394, 477
BspMI	ACCTGC	1 cut(s)	243
BspPI	GGATC	2 cut(s)	218, 423
BsrI	ACTGG	2 cut(s)	191, 294
BssECI	CCNNGG	2 cut(s)	86, 385
BssMI	GATC	5 cut(s)	6, 151, 210, 224, 428
BssT1I	CCWWGG	1 cut(s)	86
Bst2UI	CCWGG	2 cut(s)	97, 386
BstC8I	GCNNGC	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	139, 154
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	5 cut(s)	9, 154, 213, 227, 431
BstMBI	GATC	5 cut(s)	6, 151, 210, 224, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	2 cut(s)	97, 386
BstSCI	CCNGG	2 cut(s)	95, 384
BstSLI	GKGCMC	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	210, 428
BstYI	RGATCY	2 cut(s)	210, 428
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	139, 154
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 184
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	4 cut(s)	17, 82, 382, 392
CviAII	CATG	2 cut(s)	355, 433
CviJI	RGCY	4 cut(s)	19, 234, 342, 454
CviKI_1	RGCY	4 cut(s)	19, 234, 342, 454
DpnI	GATC	5 cut(s)	8, 153, 212, 226, 430
DpnII	GATC	5 cut(s)	6, 151, 210, 224, 428
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	86
Eco47I	GGWCC	3 cut(s)	82, 382, 392
EcoO109I	RGGNCCY	2 cut(s)	82, 392
EcoRII	CCWGG	2 cut(s)	95, 384
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	2 cut(s)	358, 436
FaiI	YATR	7 cut(s)	161, 216, 338, 356, 399, 434, 459
FaqI	GGGAC	4 cut(s)	68, 274, 395, 405
FatI	CATG	2 cut(s)	354, 432
FauI	CCCGC	2 cut(s)	251, 372
Fnu4HI	GCNGC	1 cut(s)	235
FokI	GGATG	2 cut(s)	146, 161
Fsp4HI	GCNGC	1 cut(s)	235
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	358, 436
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	3 cut(s)	326, 373, 486
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	3 cut(s)	40, 368, 445
Hpy188III	TCNNGA	2 cut(s)	228, 355
Hpy8I	GTNNAC	1 cut(s)	284
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	352, 363, 515
HpyCH4IV	ACGT	2 cut(s)	12, 203
HpyCH4V	TGCA	2 cut(s)	237, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpySE526I	ACGT	2 cut(s)	12, 203
Hsp92II	CATG	2 cut(s)	358, 436
HspAI	GCGC	1 cut(s)	71
KflI	GGGWCCC	1 cut(s)	392
Kzo9I	GATC	5 cut(s)	6, 151, 210, 224, 428
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	1 cut(s)	239
MaeII	ACGT	2 cut(s)	12, 203
MalI	GATC	5 cut(s)	8, 153, 212, 226, 430
MboI	GATC	5 cut(s)	6, 151, 210, 224, 428
MflI	RGATCY	2 cut(s)	210, 428
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	3 cut(s)	24, 114, 224
MroXI	GAANNNNTTC	1 cut(s)	362
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	379
MspR9I	CCNGG	2 cut(s)	97, 386
MvaI	CCWGG	2 cut(s)	97, 386
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	5 cut(s)	6, 151, 210, 224, 428
NlaIII	CATG	2 cut(s)	358, 436
NlaIV	GGNNCC	5 cut(s)	84, 383, 393, 394, 477
NmeAIII	GCCGAG	1 cut(s)	136
NsbI	TGCGCA	1 cut(s)	72
PagI	TCATGA	1 cut(s)	354
PaqCI	CACCTGC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	3 cut(s)	326, 373, 486
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	236
PpuMI	RGGWCCY	2 cut(s)	82, 392
Psp5II	RGGWCCY	2 cut(s)	82, 392
Psp6I	CCWGG	2 cut(s)	95, 384
PspGI	CCWGG	2 cut(s)	95, 384
PspN4I	GGNNCC	5 cut(s)	84, 383, 393, 394, 477
PspPI	GGNCC	4 cut(s)	17, 82, 382, 392
PspPPI	RGGWCCY	2 cut(s)	82, 392
PsuI	RGATCY	2 cut(s)	210, 428
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	5 cut(s)	6, 151, 210, 224, 428
Sau96I	GGNCC	4 cut(s)	17, 82, 382, 392
ScrFI	CCNGG	2 cut(s)	97, 386
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	4 cut(s)	15, 84, 206, 257
SfaNI	GCATC	1 cut(s)	239
SinI	GGWCC	3 cut(s)	82, 382, 392
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	4 cut(s)	124, 258, 379, 499
StyD4I	CCNGG	2 cut(s)	95, 384
StyI	CCWWGG	1 cut(s)	86
TaiI	ACGT	2 cut(s)	15, 206
TaqI	TCGA	2 cut(s)	9, 512
TasI	AATT	1 cut(s)	49
TfiI	GAWTC	3 cut(s)	326, 373, 486
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	80, 191
TseI	GCWGC	1 cut(s)	234
TspDTI	ATGAA	2 cut(s)	343, 371
TspRI	CASTG	2 cut(s)	80, 191
Van91I	CCANNNNNTGG	1 cut(s)	206
VpaK11BI	GGWCC	3 cut(s)	82, 382, 392
XmnI	GAANNNNTTC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.