Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

686566 .. 687274

Gene Structure 709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG009500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTTGATCGACGATGGGACAGAGGTAGTGAGAGAATCAGAGTGCCCTAACTGTAAAAGATTGTTCTGTGCGCAGTGTAAGGTTCCTTGGCACGCGGGGATTACTTGTGCCGAGTTTAGGAGGCGGAATAAGGATGATACTGAAAAGGATGATCTTGTTATGGAGAAACTTGCTTACAAGAAGCACTGGAGAAAGTGCCCAACGTGTGGGATCTATGTGGAAAGATCAGGAGGCTGCACAACAATGCGATGCAGGTGCGGGACTTGTTTCGACTTCCATTGTGGACGACTGGGTTGTCCTTTTTGTGGAAAACACAGAAAGAAAGATTATAGAACTATGGGCTACTTTGTATTCATGAAGGAGTACAGAAGGATTCAGCGGGACCGGGGGCAACCCTGTAATCAAGCTACTGCTAAACTTGCTACTGAGAAATGGAGATCCATGTCTCGTTCTGAAAAAAGGCCCTATGAGAACCCAGAGATGAAACCGACTAGAATCATCCGGGTGCGATCGAAGATGTCGAGTAAAGAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

178

Amino Acids

20.98

Weight (kDa)

9.49

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	13 - 36	3.7e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	243
AasI	GACNNNNNNGTC	1 cut(s)	294
Acc16I	TGCGCA	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccII	CGCG	1 cut(s)	95
AciI	CCGC	4 cut(s)	95, 124, 258, 379
AclWI	GGATC	2 cut(s)	218, 432
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	3 cut(s)	117, 206, 305
AflIII	ACRYGT	1 cut(s)	203
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	218, 432
AoxI	GGCC	1 cut(s)	461
ApeKI	GCWGC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	382, 462
AsuC2I	CCSGG	2 cut(s)	386, 503
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	2 cut(s)	47, 200
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	1 cut(s)	8
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BcnI	CCSGG	2 cut(s)	386, 503
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	243
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
Bme1390I	CCNGG	2 cut(s)	386, 503
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	2 cut(s)	382, 462
BmiI	GGNNCC	2 cut(s)	84, 383
BmrFI	CCNGG	2 cut(s)	386, 503
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	208
BpuMI	CCSGG	2 cut(s)	386, 503
BsaJI	CCNNGG	2 cut(s)	86, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 206, 305
Bse1I	ACTGG	2 cut(s)	191, 294
BseDI	CCNNGG	2 cut(s)	86, 385
BseGI	GGATG	3 cut(s)	139, 154, 498
BseLI	CCNNNNNNNGG	3 cut(s)	117, 206, 305
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	191, 294
BseSI	GKGCMC	2 cut(s)	47, 200
BseXI	GCAGC	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	512
BshFI	GGCC	1 cut(s)	463
BsiEI	CGRYCG	1 cut(s)	512
BsiSI	CCGG	2 cut(s)	385, 502
BslFI	GGGAC	3 cut(s)	31, 274, 395
BslI	CCNNNNNNNGG	3 cut(s)	117, 206, 305
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	3 cut(s)	31, 274, 395
BsnI	GGCC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	47, 200
Bsp143I	GATC	6 cut(s)	6, 151, 210, 224, 437, 509
BspACI	CCGC	4 cut(s)	95, 124, 258, 379
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	84, 383
BspMI	ACCTGC	1 cut(s)	243
BspPI	GGATC	2 cut(s)	218, 432
BsrI	ACTGG	2 cut(s)	191, 294
BssECI	CCNNGG	2 cut(s)	86, 385
BssMI	GATC	6 cut(s)	6, 151, 210, 224, 437, 509
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	3 cut(s)	139, 154, 498
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	6 cut(s)	9, 154, 213, 227, 440, 512
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	6 cut(s)	6, 151, 210, 224, 437, 509
BstMCI	CGRYCG	1 cut(s)	512
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	384, 501
BstSLI	GKGCMC	2 cut(s)	47, 200
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	210, 437
BstYI	RGATCY	2 cut(s)	210, 437
BsuRI	GGCC	1 cut(s)	463
BtgZI	GCGATG	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	139, 154, 498
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 184
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	382, 462
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	2 cut(s)	355, 442
CviJI	RGCY	5 cut(s)	234, 342, 407, 463, 534
CviKI_1	RGCY	5 cut(s)	234, 342, 407, 463, 534
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	6 cut(s)	8, 153, 212, 226, 439, 511
DpnII	GATC	6 cut(s)	6, 151, 210, 224, 437, 509
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	382
EcoO109I	RGGNCCY	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	2 cut(s)	358, 445
FaiI	YATR	7 cut(s)	161, 216, 330, 338, 356, 443, 468
FaqI	GGGAC	3 cut(s)	31, 274, 395
FatI	CATG	2 cut(s)	354, 441
FauI	CCCGC	3 cut(s)	88, 251, 372
Fnu4HI	GCNGC	1 cut(s)	235
FokI	GGATG	3 cut(s)	146, 161, 485
Fsp4HI	GCNGC	1 cut(s)	235
FspBI	CTAG	1 cut(s)	492
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	463
HapII	CCGG	2 cut(s)	385, 502
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	358, 445
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	3 cut(s)	35, 373, 495
HpaII	CCGG	2 cut(s)	385, 502
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	40, 454
Hpy188III	TCNNGA	2 cut(s)	228, 355
Hpy8I	GTNNAC	1 cut(s)	284
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	352, 363, 524
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	237, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	358, 445
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	6 cut(s)	6, 151, 210, 224, 437, 509
LpnPI	CCDG	8 cut(s)	172, 213, 238, 275, 398, 409, 489, 515
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	203
MalI	GATC	6 cut(s)	8, 153, 212, 226, 439, 511
MboI	GATC	6 cut(s)	6, 151, 210, 224, 437, 509
MboII	GAAGA	1 cut(s)	526
MflI	RGATCY	2 cut(s)	210, 437
MhlI	GDGCHC	2 cut(s)	47, 200
MnlI	CCTC	3 cut(s)	16, 114, 224
MslI	CAYNNNNRTG	2 cut(s)	242, 503
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	2 cut(s)	385, 502
MspR9I	CCNGG	2 cut(s)	386, 503
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	419
NciI	CCSGG	2 cut(s)	386, 503
NdeII	GATC	6 cut(s)	6, 151, 210, 224, 437, 509
NlaIII	CATG	2 cut(s)	358, 445
NlaIV	GGNNCC	2 cut(s)	84, 383
NmeAIII	GCCGAG	1 cut(s)	136
NsbI	TGCGCA	1 cut(s)	72
PagI	TCATGA	1 cut(s)	354
PaqCI	CACCTGC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	518
PfeI	GAWTC	3 cut(s)	35, 373, 495
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	236
Ple19I	CGATCG	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	84, 383
PspPI	GGNCC	2 cut(s)	382, 462
PsuI	RGATCY	2 cut(s)	210, 437
PvuI	CGATCG	1 cut(s)	512
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	242, 503
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	6 cut(s)	6, 151, 210, 224, 437, 509
Sau96I	GGNCC	2 cut(s)	382, 462
ScrFI	CCNGG	2 cut(s)	386, 503
SduI	GDGCHC	2 cut(s)	47, 200
SetI	ASST	5 cut(s)	27, 84, 206, 257, 409
SfaNI	GCATC	1 cut(s)	239
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	2 cut(s)	242, 503
SsiI	CCGC	4 cut(s)	95, 124, 258, 379
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	384, 501
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	4 cut(s)	9, 270, 512, 521
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	3 cut(s)	35, 373, 495
TscAI	CASTG	2 cut(s)	80, 191
TseI	GCWGC	1 cut(s)	234
TspDTI	ATGAA	3 cut(s)	343, 371, 497
TspRI	CASTG	2 cut(s)	80, 191
Van91I	CCANNNNNTGG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	382
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.