RchiOBHm_Chr2g0147691

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000271
Physical Location & Seq
Reverse (-)
65269783 .. 65270520
738 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51729

Sequence Viewer

Length: 519 bp
ATGTCAGGACCGGCCCTGCCTAGATCTGCCACTGATCTGTATGGATGTGATGCCAAGTGGAGAAATGTTCACAAACAATGGCTGCAACATTCTGCACCGATTGCATTGGAAGGTATATATGTTGGGTCTAAGATTCAGGAGATCATTTCAATGGTGAAGTGTCCTGATGTGAAATGCAAAGGAGTATTGGAGCCCCAGTCATGTAGGTCATTTATTCCTAGCAAGTGTTTGAAAGATGGGAAAGACTGCTCAGCGATGCTTGTGGATGATGGAGGGGAAGTTGTGACTGCTTCGGAGTGCCCCAACTGCCGGAGACTCTTTTGTGCTCAATGCAGGGTTGTGTGGCATGCAGGGATTGATTGTAGTGAGTTTCAGAAGTTGAGTAGGGATGAAAGATGGATGGAAGATATCATGGTGATGGAGTTTGCTAAGAAACAGCAATGGAGGAGATGCCCAAGGTGCAAGTTCTATGTGGAGAAGACTGCTGGCTGCTCACACGTTACTTGCAGAGCGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-RING_UBOX

Protein Analysis

172

Amino Acids

19.48

Weight (kDa)

8.61

Isoelectric Point (pI)

58.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 49 - 121 3e-06 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 309
AflIII ACRYGT 1 cut(s) 496
AgsI TTSAA 2 cut(s) 150, 232
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 307
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 82, 489
AspS9I GGNCC 2 cut(s) 8, 13
AsuHPI GGTGA 2 cut(s) 166, 427
AvaII GGWCC 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 2 cut(s) 69, 476
BccI CCATC 5 cut(s) 230, 263, 390, 394, 412
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 2 cut(s) 21, 219
BglII AGATCT 1 cut(s) 23
BisI GCNGC 2 cut(s) 83, 490
BlpI GCTNAGC 1 cut(s) 250
BlsI GCNGC 2 cut(s) 84, 491
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 8, 13
BmiI GGNNCC 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 3 cut(s) 40, 246, 440
BmuI ACTGGG 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 485
Bpu1102I GCTNAGC 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 455
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 455
BseGI GGATG 4 cut(s) 50, 271, 394, 405
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 460
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 2 cut(s) 69, 476
BsgI GTGCAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 2 cut(s) 11, 310
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 307
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 3 cut(s) 195, 302, 328
Bsp143I GATC 3 cut(s) 23, 34, 141
Bsp1720I GCTNAGC 1 cut(s) 250
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 455
BssMI GATC 3 cut(s) 23, 34, 141
BssT1I CCWWGG 1 cut(s) 455
BstAPI GCANNNNNTGC 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 348, 487
BstDEI CTNAG 3 cut(s) 129, 250, 429
BstF5I GGATG 4 cut(s) 50, 271, 394, 405
BstKTI GATC 3 cut(s) 26, 37, 144
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 3 cut(s) 23, 34, 141
BstMWI GCNNNNNNNGC 3 cut(s) 101, 306, 459
BstNSI RCATGY 1 cut(s) 350
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 69, 476
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 269
BtsCI GGATG 4 cut(s) 50, 271, 394, 405
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 348, 487
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 8, 13
CviAII CATG 3 cut(s) 201, 347, 412
CviJI RGCY 4 cut(s) 14, 82, 193, 489
CviKI_1 RGCY 4 cut(s) 14, 82, 193, 489
DdeI CTNAG 3 cut(s) 129, 250, 429
DpnI GATC 3 cut(s) 25, 36, 143
DpnII GATC 3 cut(s) 23, 34, 141
Eco130I CCWWGG 1 cut(s) 455
Eco24I GRGCYC 1 cut(s) 195
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 8
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 455
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 455
FaeI CATG 3 cut(s) 204, 350, 415
FaiI YATR 8 cut(s) 42, 116, 118, 120, 202, 348, 413, 471
FatI CATG 3 cut(s) 200, 346, 411
Fnu4HI GCNGC 2 cut(s) 83, 490
FokI GGATG 4 cut(s) 57, 278, 401, 412
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 2 cut(s) 83, 490
FspBI CTAG 2 cut(s) 21, 219
GluI GCNGC 2 cut(s) 83, 490
HaeIII GGCC 1 cut(s) 14
HapII CCGG 2 cut(s) 11, 310
Hin1II CATG 3 cut(s) 204, 350, 415
HinfI GANTC 2 cut(s) 133, 315
HpaII CCGG 2 cut(s) 11, 310
HphI GGTGA 2 cut(s) 166, 427
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 295, 375
Hpy188III TCNNGA 3 cut(s) 6, 137, 164
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 8 cut(s) 85, 95, 104, 177, 333, 350, 462, 507
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 306, 459
HpyF3I CTNAG 3 cut(s) 129, 250, 429
HpySE526I ACGT 1 cut(s) 498
Hsp92II CATG 3 cut(s) 204, 350, 415
Kzo9I GATC 3 cut(s) 23, 34, 141
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 9 cut(s) 24, 29, 122, 177, 209, 319, 323, 336, 471
Lsp1109I GCAGC 2 cut(s) 69, 476
LweI GCATC 3 cut(s) 40, 246, 440
MaeI CTAG 2 cut(s) 21, 219
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 283, 499
MalI GATC 3 cut(s) 25, 36, 143
MboI GATC 3 cut(s) 23, 34, 141
MboII GAAGA 2 cut(s) 416, 490
MflI RGATCY 1 cut(s) 23
MhlI GDGCHC 3 cut(s) 195, 302, 328
MlyI GAGTC 1 cut(s) 309
MnlI CCTC 2 cut(s) 266, 438
MslI CAYNNNNRTG 2 cut(s) 149, 416
MspI CCGG 2 cut(s) 11, 310
MwoI GCNNNNNNNGC 3 cut(s) 101, 306, 459
NdeII GATC 3 cut(s) 23, 34, 141
NlaIII CATG 3 cut(s) 204, 350, 415
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 1 cut(s) 350
PaeI GCATGC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 84, 491
PleI GAGTC 1 cut(s) 309
PpsI GAGTC 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 2 cut(s) 8, 13
PsuI RGATCY 1 cut(s) 23
RseI CAYNNNNRTG 2 cut(s) 149, 416
SatI GCNGC 2 cut(s) 83, 490
Sau3AI GATC 3 cut(s) 23, 34, 141
Sau96I GGNCC 2 cut(s) 8, 13
SchI GAGTC 1 cut(s) 309
SduI GDGCHC 3 cut(s) 195, 302, 328
SetI ASST 4 cut(s) 115, 209, 461, 501
SfaNI GCATC 3 cut(s) 40, 246, 440
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 149, 416
SphI GCATGC 1 cut(s) 350
SspMI CTAG 2 cut(s) 21, 219
StyI CCWWGG 1 cut(s) 455
TaiI ACGT 1 cut(s) 501
TfiI GAWTC 1 cut(s) 133
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 2 cut(s) 82, 489
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 405
TspRI CASTG 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 8
XceI RCATGY 1 cut(s) 350
XspI CTAG 2 cut(s) 21, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.