E3 ubiquitin-protein ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| IBR | PF01485 | 274 - 330 | 5.7e-10 | IBR domain, a half RING-finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1125 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1176 |
| Acc16I | TGCGCA | 3 cut(s) | 133, 277, 954 |
| Acc36I | ACCTGC | 2 cut(s) | 422, 1125 |
| Acc65I | GGTACC | 1 cut(s) | 1273 |
| AccB1I | GGYRCC | 2 cut(s) | 729, 1273 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1088, 1187 |
| AccII | CGCG | 1 cut(s) | 977 |
| AciI | CCGC | 8 cut(s) | 292, 411, 423, 879, 977, 1006, 1140, 1261 |
| AclWI | GGATC | 4 cut(s) | 315, 755, 1100, 1305 |
| AcsI | RAATTY | 3 cut(s) | 55, 603, 851 |
| AfaI | GTAC | 6 cut(s) | 146, 670, 738, 1058, 1247, 1275 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 868, 1088, 1187 |
| AflII | CTTAAG | 1 cut(s) | 866 |
| AflIII | ACRYGT | 1 cut(s) | 1085 |
| AgsI | TTSAA | 5 cut(s) | 55, 203, 508, 803, 1153 |
| AjnI | CCWGG | 2 cut(s) | 402, 1266 |
| AluBI | AGCT | 3 cut(s) | 206, 350, 703 |
| AluI | AGCT | 3 cut(s) | 206, 350, 703 |
| Alw21I | GWGCWC | 2 cut(s) | 18, 352 |
| Alw26I | GTCTC | 6 cut(s) | 230, 288, 291, 608, 849, 1323 |
| AlwI | GGATC | 4 cut(s) | 315, 755, 1100, 1305 |
| Ama87I | CYCGRG | 2 cut(s) | 415, 791 |
| ApeKI | GCWGC | 2 cut(s) | 81, 1116 |
| ApoI | RAATTY | 3 cut(s) | 55, 603, 851 |
| Asp718I | GGTACC | 1 cut(s) | 1273 |
| AspLEI | GCGC | 3 cut(s) | 134, 278, 955 |
| AspS9I | GGNCC | 1 cut(s) | 1264 |
| AsuC2I | CCSGG | 1 cut(s) | 1376 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| AvaI | CYCGRG | 2 cut(s) | 415, 791 |
| AvaII | GGWCC | 1 cut(s) | 1264 |
| BaeGI | GKGCMC | 4 cut(s) | 122, 266, 929, 1082 |
| BanI | GGYRCC | 2 cut(s) | 729, 1273 |
| BanII | GRGCYC | 1 cut(s) | 352 |
| Bbv12I | GWGCWC | 2 cut(s) | 18, 352 |
| BbvI | GCAGC | 2 cut(s) | 93, 1103 |
| BccI | CCATC | 3 cut(s) | 215, 595, 890 |
| BceAI | ACGGC | 1 cut(s) | 318 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 434, 468, 615, 649, 1119, 1153 |
| BciT130I | CCWGG | 2 cut(s) | 404, 1268 |
| BcnI | CCSGG | 1 cut(s) | 1376 |
| BcoDI | GTCTC | 6 cut(s) | 230, 288, 291, 608, 849, 1323 |
| BfaI | CTAG | 1 cut(s) | 1212 |
| BfrI | CTTAAG | 1 cut(s) | 866 |
| BfuAI | ACCTGC | 2 cut(s) | 422, 1125 |
| BisI | GCNGC | 2 cut(s) | 82, 1117 |
| BlsI | GCNGC | 2 cut(s) | 83, 1118 |
| Bme1390I | CCNGG | 3 cut(s) | 404, 1268, 1376 |
| Bme18I | GGWCC | 1 cut(s) | 1264 |
| BmeT110I | CYCGRG | 2 cut(s) | 415, 791 |
| BmgT120I | GGNCC | 1 cut(s) | 1264 |
| BmiI | GGNNCC | 4 cut(s) | 731, 966, 1265, 1275 |
| BmrFI | CCNGG | 3 cut(s) | 404, 1268, 1376 |
| BmrI | ACTGGG | 1 cut(s) | 1181 |
| BmsI | GCATC | 2 cut(s) | 10, 1121 |
| BmuI | ACTGGG | 1 cut(s) | 1181 |
| BpmI | CTGGAG | 1 cut(s) | 1090 |
| BpuMI | CCSGG | 1 cut(s) | 1376 |
| Bsa29I | ATCGAT | 1 cut(s) | 444 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1367 |
| BsaI | GGTCTC | 3 cut(s) | 230, 608, 849 |
| BsaJI | CCNNGG | 4 cut(s) | 402, 792, 968, 1267 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 868, 1088, 1187 |
| Bse118I | RCCGGY | 1 cut(s) | 622 |
| Bse1I | ACTGG | 3 cut(s) | 142, 1073, 1176 |
| Bse3DI | GCAATG | 2 cut(s) | 285, 888 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1367 |
| BseBI | CCWGG | 2 cut(s) | 404, 1268 |
| BseCI | ATCGAT | 1 cut(s) | 444 |
| BseDI | CCNNGG | 4 cut(s) | 402, 792, 968, 1267 |
| BseGI | GGATG | 4 cut(s) | 226, 835, 1021, 1036 |
| BseJI | GATNNNNATC | 1 cut(s) | 1367 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 868, 1088, 1187 |
| BseMI | GCAATG | 2 cut(s) | 285, 888 |
| BseMII | CTCAG | 3 cut(s) | 241, 394, 860 |
| BseNI | ACTGG | 3 cut(s) | 142, 1073, 1176 |
| BseRI | GAGGAG | 2 cut(s) | 91, 104 |
| BseSI | GKGCMC | 4 cut(s) | 122, 266, 929, 1082 |
| BseXI | GCAGC | 2 cut(s) | 93, 1103 |
| BsgI | GTGCAG | 1 cut(s) | 1102 |
| Bsh1236I | CGCG | 1 cut(s) | 977 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1385 |
| BshNI | GGYRCC | 2 cut(s) | 729, 1273 |
| BshVI | ATCGAT | 1 cut(s) | 444 |
| BsiEI | CGRYCG | 1 cut(s) | 1385 |
| BsiHKAI | GWGCWC | 2 cut(s) | 18, 352 |
| BsiHKCI | CYCGRG | 2 cut(s) | 415, 791 |
| BsiSI | CCGG | 3 cut(s) | 190, 623, 1375 |
| BslFI | GGGAC | 4 cut(s) | 405, 913, 1156, 1277 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 868, 1088, 1187 |
| BsmAI | GTCTC | 6 cut(s) | 230, 288, 291, 608, 849, 1323 |
| BsmFI | GGGAC | 4 cut(s) | 405, 913, 1156, 1277 |
| Bso31I | GGTCTC | 3 cut(s) | 230, 608, 849 |
| BsoBI | CYCGRG | 2 cut(s) | 415, 791 |
| Bsp1286I | GDGCHC | 6 cut(s) | 18, 122, 266, 352, 929, 1082 |
| BspACI | CCGC | 8 cut(s) | 292, 411, 423, 879, 977, 1006, 1140, 1261 |
| BspCNI | CTCAG | 3 cut(s) | 240, 393, 859 |
| BspDI | ATCGAT | 1 cut(s) | 444 |
| BspFNI | CGCG | 1 cut(s) | 977 |
| BspHI | TCATGA | 3 cut(s) | 208, 352, 1236 |
| BspLI | GGNNCC | 4 cut(s) | 731, 966, 1265, 1275 |
| BspMI | ACCTGC | 2 cut(s) | 422, 1125 |
| BspPI | GGATC | 4 cut(s) | 315, 755, 1100, 1305 |
| BspT107I | GGYRCC | 2 cut(s) | 729, 1273 |
| BspTI | CTTAAG | 1 cut(s) | 866 |
| BspTNI | GGTCTC | 3 cut(s) | 230, 608, 849 |
| BsrDI | GCAATG | 2 cut(s) | 285, 888 |
| BsrFI | RCCGGY | 1 cut(s) | 622 |
| BsrI | ACTGG | 3 cut(s) | 142, 1073, 1176 |
| BssAI | RCCGGY | 1 cut(s) | 622 |
| BssECI | CCNNGG | 4 cut(s) | 402, 792, 968, 1267 |
| BssT1I | CCWWGG | 1 cut(s) | 968 |
| Bst2UI | CCWGG | 2 cut(s) | 404, 1268 |
| Bst4CI | ACNGT | 2 cut(s) | 261, 935 |
| Bst6I | CTCTTC | 1 cut(s) | 480 |
| BstAFI | CTTAAG | 1 cut(s) | 866 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 729 |
| BstC8I | GCNNGC | 4 cut(s) | 539, 624, 721, 975 |
| BstDEI | CTNAG | 4 cut(s) | 227, 380, 500, 846 |
| BstF5I | GGATG | 4 cut(s) | 226, 835, 1021, 1036 |
| BstFNI | CGCG | 1 cut(s) | 977 |
| BstHHI | GCGC | 3 cut(s) | 134, 278, 955 |
| BstMAI | GTCTC | 6 cut(s) | 230, 288, 291, 608, 849, 1323 |
| BstMCI | CGRYCG | 1 cut(s) | 1385 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 203, 729, 1292 |
| BstNI | CCWGG | 2 cut(s) | 404, 1268 |
| BstSCI | CCNGG | 3 cut(s) | 402, 1266, 1374 |
| BstSLI | GKGCMC | 4 cut(s) | 122, 266, 929, 1082 |
| BstUI | CGCG | 1 cut(s) | 977 |
| BstV1I | GCAGC | 2 cut(s) | 93, 1103 |
| BstX2I | RGATCY | 2 cut(s) | 1092, 1310 |
| BstYI | RGATCY | 2 cut(s) | 1092, 1310 |
| Bsu15I | ATCGAT | 1 cut(s) | 444 |
| BsuTUI | ATCGAT | 1 cut(s) | 444 |
| BtgZI | GCGATG | 1 cut(s) | 1144 |
| BtsCI | GGATG | 4 cut(s) | 226, 835, 1021, 1036 |
| BtsI | GCAGTG | 1 cut(s) | 962 |
| BtsIMutI | CAGTG | 3 cut(s) | 266, 962, 1066 |
| BveI | ACCTGC | 2 cut(s) | 422, 1125 |
| Cac8I | GCNNGC | 4 cut(s) | 539, 624, 721, 975 |
| CciI | TCATGA | 3 cut(s) | 208, 352, 1236 |
| CfoI | GCGC | 3 cut(s) | 134, 278, 955 |
| Cfr10I | RCCGGY | 1 cut(s) | 622 |
| Cfr13I | GGNCC | 1 cut(s) | 1264 |
| ClaI | ATCGAT | 1 cut(s) | 444 |
| Csp6I | GTAC | 6 cut(s) | 145, 669, 737, 1057, 1246, 1274 |
| CviAII | CATG | 7 cut(s) | 10, 151, 209, 353, 659, 1237, 1315 |
| CviQI | GTAC | 6 cut(s) | 145, 669, 737, 1057, 1246, 1274 |
| DdeI | CTNAG | 4 cut(s) | 227, 380, 500, 846 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1176 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1176 |
| Eam1104I | CTCTTC | 1 cut(s) | 480 |
| EarI | CTCTTC | 1 cut(s) | 480 |
| EciI | GGCGGA | 2 cut(s) | 400, 1021 |
| Ecl136II | GAGCTC | 1 cut(s) | 350 |
| Eco130I | CCWWGG | 1 cut(s) | 968 |
| Eco24I | GRGCYC | 1 cut(s) | 352 |
| Eco31I | GGTCTC | 3 cut(s) | 230, 608, 849 |
| Eco47I | GGWCC | 1 cut(s) | 1264 |
| Eco53kI | GAGCTC | 1 cut(s) | 350 |
| Eco88I | CYCGRG | 2 cut(s) | 415, 791 |
| EcoICRI | GAGCTC | 1 cut(s) | 350 |
| EcoRI | GAATTC | 1 cut(s) | 55 |
| EcoRII | CCWGG | 2 cut(s) | 402, 1266 |
| EcoT14I | CCWWGG | 1 cut(s) | 968 |
| EcoT38I | GRGCYC | 1 cut(s) | 352 |
| ErhI | CCWWGG | 1 cut(s) | 968 |
| FaeI | CATG | 7 cut(s) | 13, 154, 212, 356, 662, 1240, 1318 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 741, 773 |
| FaqI | GGGAC | 4 cut(s) | 405, 913, 1156, 1277 |
| FatI | CATG | 7 cut(s) | 9, 150, 208, 352, 658, 1236, 1314 |
| FauI | CCCGC | 4 cut(s) | 430, 970, 1133, 1254 |
| Fnu4HI | GCNGC | 2 cut(s) | 82, 1117 |
| FokI | GGATG | 4 cut(s) | 233, 842, 1028, 1043 |
| FriOI | GRGCYC | 1 cut(s) | 352 |
| Fsp4HI | GCNGC | 2 cut(s) | 82, 1117 |
| FspBI | CTAG | 1 cut(s) | 1212 |
| FspI | TGCGCA | 3 cut(s) | 133, 277, 954 |
| GlaI | GCGC | 3 cut(s) | 133, 277, 954 |
| GluI | GCNGC | 2 cut(s) | 82, 1117 |
| GsuI | CTGGAG | 1 cut(s) | 1090 |
| HapII | CCGG | 3 cut(s) | 190, 623, 1375 |
| HhaI | GCGC | 3 cut(s) | 134, 278, 955 |
| Hin1II | CATG | 7 cut(s) | 13, 154, 212, 356, 662, 1240, 1318 |
| Hin6I | GCGC | 3 cut(s) | 132, 276, 953 |
| HinP1I | GCGC | 3 cut(s) | 132, 276, 953 |
| HincII | GTYRAC | 1 cut(s) | 338 |
| HindII | GTYRAC | 1 cut(s) | 338 |
| HpaII | CCGG | 3 cut(s) | 190, 623, 1375 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy166II | GTNNAC | 4 cut(s) | 7, 338, 694, 1166 |
| Hpy188I | TCNGA | 7 cut(s) | 61, 162, 176, 327, 849, 922, 1327 |
| Hpy8I | GTNNAC | 4 cut(s) | 7, 338, 694, 1166 |
| Hpy99I | CGWCG | 1 cut(s) | 896 |
| HpyAV | CCTTC | 5 cut(s) | 39, 554, 1234, 1245, 1397 |
| HpyCH4III | ACNGT | 2 cut(s) | 261, 935 |
| HpyCH4IV | ACGT | 1 cut(s) | 1085 |
| HpyCH4V | TGCA | 4 cut(s) | 654, 747, 1119, 1134 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 203, 729, 1292 |
| HpyF3I | CTNAG | 4 cut(s) | 227, 380, 500, 846 |
| HpySE526I | ACGT | 1 cut(s) | 1085 |
| Hsp92II | CATG | 7 cut(s) | 13, 154, 212, 356, 662, 1240, 1318 |
| HspAI | GCGC | 3 cut(s) | 132, 276, 953 |
| KpnI | GGTACC | 1 cut(s) | 1277 |
| KroI | GCCGGC | 1 cut(s) | 622 |
| KroNI | GCCGGC | 1 cut(s) | 624 |
| LmnI | GCTCC | 7 cut(s) | 13, 78, 91, 177, 347, 708, 881 |
| Lsp1109I | GCAGC | 2 cut(s) | 93, 1103 |
| LweI | GCATC | 2 cut(s) | 10, 1121 |
| MaeI | CTAG | 1 cut(s) | 1212 |
| MaeII | ACGT | 1 cut(s) | 1085 |
| MaeIII | GTNAC | 2 cut(s) | 434, 753 |
| MboII | GAAGA | 4 cut(s) | 373, 497, 1363, 1399 |
| MfeI | CAATTG | 1 cut(s) | 319 |
| MflI | RGATCY | 2 cut(s) | 1092, 1310 |
| MhlI | GDGCHC | 6 cut(s) | 18, 122, 266, 352, 929, 1082 |
| MluCI | AATT | 7 cut(s) | 55, 248, 319, 389, 603, 649, 851 |
| MlyI | GAGTC | 2 cut(s) | 427, 689 |
| MroNI | GCCGGC | 1 cut(s) | 622 |
| MseI | TTAA | 2 cut(s) | 867, 999 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1124 |
| MspA1I | CMGCKG | 1 cut(s) | 1261 |
| MspCI | CTTAAG | 1 cut(s) | 866 |
| MspI | CCGG | 3 cut(s) | 190, 623, 1375 |
| MspR9I | CCNGG | 3 cut(s) | 404, 1268, 1376 |
| MunI | CAATTG | 1 cut(s) | 319 |
| MvaI | CCWGG | 2 cut(s) | 404, 1268 |
| MvnI | CGCG | 1 cut(s) | 977 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 203, 729, 1292 |
| NaeI | GCCGGC | 1 cut(s) | 624 |
| NciI | CCSGG | 1 cut(s) | 1376 |
| NgoMIV | GCCGGC | 1 cut(s) | 622 |
| NlaIII | CATG | 7 cut(s) | 13, 154, 212, 356, 662, 1240, 1318 |
| NlaIV | GGNNCC | 4 cut(s) | 731, 966, 1265, 1275 |
| NmeAIII | GCCGAG | 2 cut(s) | 320, 1018 |
| NmuCI | GTSAC | 1 cut(s) | 753 |
| NsbI | TGCGCA | 3 cut(s) | 133, 277, 954 |
| PagI | TCATGA | 3 cut(s) | 208, 352, 1236 |
| PaqCI | CACCTGC | 1 cut(s) | 1125 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 172, 1391 |
| PdiI | GCCGGC | 1 cut(s) | 624 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1088, 1187 |
| PkrI | GCNGC | 2 cut(s) | 83, 1118 |
| Ple19I | CGATCG | 1 cut(s) | 1385 |
| PleI | GAGTC | 2 cut(s) | 426, 689 |
| PpsI | GAGTC | 2 cut(s) | 426, 689 |
| Psp124BI | GAGCTC | 1 cut(s) | 352 |
| Psp6I | CCWGG | 2 cut(s) | 402, 1266 |
| PspGI | CCWGG | 2 cut(s) | 402, 1266 |
| PspN4I | GGNNCC | 4 cut(s) | 731, 966, 1265, 1275 |
| PspPI | GGNCC | 1 cut(s) | 1264 |
| PsuI | RGATCY | 2 cut(s) | 1092, 1310 |
| PvuI | CGATCG | 1 cut(s) | 1385 |
| RsaI | GTAC | 6 cut(s) | 146, 670, 738, 1058, 1247, 1275 |
| RsaNI | GTAC | 6 cut(s) | 145, 669, 737, 1057, 1246, 1274 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1124 |
| SacI | GAGCTC | 1 cut(s) | 352 |
| SaqAI | TTAA | 2 cut(s) | 867, 999 |
| SatI | GCNGC | 2 cut(s) | 82, 1117 |
| Sau96I | GGNCC | 1 cut(s) | 1264 |
| SchI | GAGTC | 2 cut(s) | 427, 689 |
| ScrFI | CCNGG | 3 cut(s) | 404, 1268, 1376 |
| SduI | GDGCHC | 6 cut(s) | 18, 122, 266, 352, 929, 1082 |
| SfaNI | GCATC | 2 cut(s) | 10, 1121 |
| SinI | GGWCC | 1 cut(s) | 1264 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1124 |
| SmlI | CTYRAG | 1 cut(s) | 866 |
| SmoI | CTYRAG | 1 cut(s) | 866 |
| Sse9I | AATT | 7 cut(s) | 55, 248, 319, 389, 603, 649, 851 |
| SsiI | CCGC | 8 cut(s) | 292, 411, 423, 879, 977, 1006, 1140, 1261 |
| SspI | AATATT | 1 cut(s) | 770 |
| SspMI | CTAG | 1 cut(s) | 1212 |
| SstI | GAGCTC | 1 cut(s) | 352 |
| StyD4I | CCNGG | 3 cut(s) | 402, 1266, 1374 |
| StyI | CCWWGG | 1 cut(s) | 968 |
| TaaI | ACNGT | 2 cut(s) | 261, 935 |
| TaiI | ACGT | 1 cut(s) | 1088 |
| TaqI | TCGA | 7 cut(s) | 41, 444, 698, 779, 891, 1385, 1394 |
| TasI | AATT | 7 cut(s) | 55, 248, 319, 389, 603, 649, 851 |
| TatI | WGTACW | 2 cut(s) | 668, 1245 |
| Tru1I | TTAA | 2 cut(s) | 867, 999 |
| Tru9I | TTAA | 2 cut(s) | 867, 999 |
| TscAI | CASTG | 3 cut(s) | 266, 962, 1073 |
| TseFI | GTSAC | 1 cut(s) | 753 |
| TseI | GCWGC | 2 cut(s) | 81, 1116 |
| Tsp45I | GTSAC | 1 cut(s) | 753 |
| TspDTI | ATGAA | 8 cut(s) | 225, 369, 374, 430, 498, 1225, 1253, 1370 |
| TspRI | CASTG | 3 cut(s) | 266, 962, 1073 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1088, 1187 |
| Vha464I | CTTAAG | 1 cut(s) | 866 |
| VpaK11BI | GGWCC | 1 cut(s) | 1264 |
| XapI | RAATTY | 3 cut(s) | 55, 603, 851 |
| XbaI | TCTAGA | 1 cut(s) | 1211 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 105, 249 |
| XspI | CTAG | 1 cut(s) | 1212 |