FvH4_3g00870

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
440209 .. 441914
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00870.t1

Sequence Viewer

Length: 999 bp
ATGAAATCCGCCCACAGTCCTAAAGCAGGTTACTTCATCGATCTCTCTGCTGAAACCCTGAACTATTACGATAGTGATGAAGAGGTTAAGGTCCTAAGGTTCAAACCCTCCGATATCCGTTTCGGGAAAAGAAAGAGAACAGAAACCTTAAACGAGGCCCCATCTTTTGCATGTGATATTTGTGTAGAGGCCAAGCCGGCACATGAGTCGTTTGGTATCAAAAACTGCAGCCATGTTTACTGTACTGATTGCGTGGTGAAATACGTGGACTCCAAGCTCCAAGAAAATATAGCAAGCATAGGGTGCCTTGTACCCGATTGCAAAGGTTCACTGGATCCCGAACATTGCCATTCAATTCTGAAACCGGAGGTGTTTGAAAAATGGGGAAGAATTTTATGCGAGGACATGATTATTGGGTCTCAGAAATTTTACTGCCCCTTTAAGGACTGCTCCGCAATGTTGATCGACGATGGGGCAGAGGCAGTGAGGGAATCAGAGTGCCCTAATTGTAAAAGATTGTTTTGTGCGCAGTGTAAGGTTCCTTGGCACGCCCAACTTACTTGTTCTCAGTTTAAGAGGCGGAGTACGAATGATCCTGAAAAGGAGGATATCATGATGGAGAAACTTGCTTTCAAGAAGCACTGGAGGAAGTGCCCATGGTGTGGGATTTATGTGGAAAGAACAGGAGGCTGCACATCAATACGATGCAGGTGCGGAACTTATTTCAACTTTCATTGTGGACGAATGGGTTGTACTTATTGTGAAAATTCCAAAAGGAGGAGGGATAGTCGAAGTATAGGCTACTTCGTATTCTTGGAAGAGTATAAAAAGAATCACCGGGATAAACTTTTTACTAAAGATACTGCTAAACTTGTTTATGAAACATGGAGATCAATGTCTCGTTCTGAAAAGAAACCTTATGAGAACACAGAGATGAAGCCGACTGTGATTTTGATGAAGCCGACTGTGATTTTGATGAAGCCAACCAAGCCAACATAA

Protein Analysis

333

Amino Acids

38.45

Weight (kDa)

8.74

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 127 - 188 1.8e-10 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 699
Acc16I TGCGCA 1 cut(s) 528
Acc36I ACCTGC 2 cut(s) 17, 699
AccB1I GGYRCC 1 cut(s) 303
AccB7I CCANNNNNTGG 1 cut(s) 662
AciI CCGC 4 cut(s) 9, 453, 580, 714
AclWI GGATC 3 cut(s) 329, 342, 587
AcsI RAATTY 3 cut(s) 390, 425, 766
AfaI GTAC 4 cut(s) 244, 312, 586, 754
AfiI CCNNNNNNNGG 4 cut(s) 26, 442, 662, 777
AgsI TTSAA 5 cut(s) 103, 354, 377, 634, 727
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 423, 903
AlwI GGATC 3 cut(s) 329, 342, 587
AoxI GGCC 2 cut(s) 156, 189
ApeKI GCWGC 2 cut(s) 228, 690
ApoI RAATTY 3 cut(s) 390, 425, 766
ArsI GACNNNNNNTTYG 4 cut(s) 934, 955, 966, 987
AspLEI GCGC 1 cut(s) 529
AspS9I GGNCC 2 cut(s) 91, 157
AsuC2I CCSGG 1 cut(s) 839
AsuHPI GGTGA 2 cut(s) 268, 827
AvaII GGWCC 1 cut(s) 91
AxyI CCTNAGG 1 cut(s) 95
BaeGI GKGCMC 2 cut(s) 503, 656
BamHI GGATCC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 303
BbvI GCAGC 2 cut(s) 240, 677
BccI CCATC 3 cut(s) 169, 464, 610
BcgI CGANNNNNNTGC 6 cut(s) 29, 63, 189, 223, 693, 727
BcnI CCSGG 1 cut(s) 839
BcoDI GTCTC 2 cut(s) 423, 903
BfmI CTRYAG 1 cut(s) 226
BfuAI ACCTGC 2 cut(s) 17, 699
BglI GCCNNNNNGGC 1 cut(s) 197
BisI GCNGC 2 cut(s) 229, 691
BlsI GCNGC 2 cut(s) 230, 692
Bme1390I CCNGG 1 cut(s) 839
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 91, 157
BmiI GGNNCC 4 cut(s) 159, 305, 336, 540
BmrFI CCNGG 1 cut(s) 839
BmsI GCATC 1 cut(s) 695
BpmI CTGGAG 1 cut(s) 664
BpuMI CCSGG 1 cut(s) 839
Bsa29I ATCGAT 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 542, 656
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 772, 802
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 442, 662, 777
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 2 cut(s) 336, 647
Bse21I CCTNAGG 1 cut(s) 95
Bse3DI GCAATG 2 cut(s) 343, 462
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 542, 656
BseLI CCNNNNNNNGG 4 cut(s) 26, 442, 662, 777
BseMI GCAATG 2 cut(s) 343, 462
BseMII CTCAG 2 cut(s) 434, 581
BseNI ACTGG 2 cut(s) 336, 647
BseRI GAGGAG 1 cut(s) 793
BseSI GKGCMC 2 cut(s) 503, 656
BseXI GCAGC 2 cut(s) 240, 677
BsgI GTGCAG 1 cut(s) 676
BshFI GGCC 2 cut(s) 158, 191
BshNI GGYRCC 1 cut(s) 303
BshVI ATCGAT 1 cut(s) 39
BsiSI CCGG 3 cut(s) 197, 365, 838
BslI CCNNNNNNNGG 4 cut(s) 26, 442, 662, 777
BsmAI GTCTC 2 cut(s) 423, 903
BsnI GGCC 2 cut(s) 158, 191
Bso31I GGTCTC 1 cut(s) 423
Bsp1286I GDGCHC 2 cut(s) 503, 656
Bsp143I GATC 5 cut(s) 40, 334, 462, 592, 890
Bsp19I CCATGG 1 cut(s) 656
BspACI CCGC 4 cut(s) 9, 453, 580, 714
BspANI GGCC 2 cut(s) 158, 191
BspCNI CTCAG 2 cut(s) 433, 580
BspDI ATCGAT 1 cut(s) 39
BspHI TCATGA 1 cut(s) 612
BspLI GGNNCC 4 cut(s) 159, 305, 336, 540
BspMAI CTGCAG 1 cut(s) 230
BspMI ACCTGC 2 cut(s) 17, 699
BspPI GGATC 3 cut(s) 329, 342, 587
BspT107I GGYRCC 1 cut(s) 303
BspTNI GGTCTC 1 cut(s) 423
BsrDI GCAATG 2 cut(s) 343, 462
BsrFI RCCGGY 1 cut(s) 196
BsrI ACTGG 2 cut(s) 336, 647
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 542, 656
BssMI GATC 5 cut(s) 40, 334, 462, 592, 890
BssT1I CCWWGG 2 cut(s) 542, 656
Bst4CI ACNGT 4 cut(s) 17, 242, 946, 967
Bst6I CTCTTC 2 cut(s) 75, 813
BstAPI GCANNNNNTGC 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 265
BstC8I GCNNGC 3 cut(s) 198, 295, 549
BstDEI CTNAG 3 cut(s) 95, 420, 567
BstDSI CCRYGG 1 cut(s) 656
BstENI CCTNNNNNAGG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 5 cut(s) 43, 337, 465, 595, 893
BstMAI GTCTC 2 cut(s) 423, 903
BstMBI GATC 5 cut(s) 40, 334, 462, 592, 890
BstMWI GCNNNNNNNGC 3 cut(s) 197, 303, 988
BstNSI RCATGY 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 837
BstSFI CTRYAG 1 cut(s) 226
BstSLI GKGCMC 2 cut(s) 503, 656
BstV1I GCAGC 2 cut(s) 240, 677
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
Bsu15I ATCGAT 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 95
BsuRI GGCC 2 cut(s) 158, 191
BsuTUI ATCGAT 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 656
BtsI GCAGTG 2 cut(s) 489, 536
BtsIMutI CAGTG 4 cut(s) 329, 489, 536, 640
BveI ACCTGC 2 cut(s) 17, 699
Cac8I GCNNGC 3 cut(s) 198, 295, 549
CciI TCATGA 1 cut(s) 612
CfoI GCGC 1 cut(s) 529
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 91, 157
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 4 cut(s) 243, 311, 585, 753
CviAII CATG 7 cut(s) 171, 203, 233, 406, 613, 657, 885
CviQI GTAC 4 cut(s) 243, 311, 585, 753
DdeI CTNAG 3 cut(s) 95, 420, 567
DpnI GATC 5 cut(s) 42, 336, 464, 594, 892
DpnII GATC 5 cut(s) 40, 334, 462, 592, 890
Eam1104I CTCTTC 2 cut(s) 75, 813
EarI CTCTTC 2 cut(s) 75, 813
EciI GGCGGA 1 cut(s) 595
Eco130I CCWWGG 2 cut(s) 542, 656
Eco31I GGTCTC 1 cut(s) 423
Eco32I GATATC 2 cut(s) 115, 610
Eco47I GGWCC 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoO109I RGGNCCY 2 cut(s) 91, 157
EcoRV GATATC 2 cut(s) 115, 610
EcoT14I CCWWGG 2 cut(s) 542, 656
ErhI CCWWGG 2 cut(s) 542, 656
FaeI CATG 7 cut(s) 174, 206, 236, 409, 616, 660, 888
FatI CATG 7 cut(s) 170, 202, 232, 405, 612, 656, 884
Fnu4HI GCNGC 2 cut(s) 229, 691
Fsp4HI GCNGC 2 cut(s) 229, 691
FspI TGCGCA 1 cut(s) 528
GlaI GCGC 1 cut(s) 528
GluI GCNGC 2 cut(s) 229, 691
GsuI CTGGAG 1 cut(s) 664
HaeIII GGCC 2 cut(s) 158, 191
HapII CCGG 3 cut(s) 197, 365, 838
HhaI GCGC 1 cut(s) 529
Hin1II CATG 7 cut(s) 174, 206, 236, 409, 616, 660, 888
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HinfI GANTC 4 cut(s) 206, 269, 491, 832
HpaII CCGG 3 cut(s) 197, 365, 838
HphI GGTGA 2 cut(s) 268, 827
Hpy166II GTNNAC 4 cut(s) 238, 268, 329, 740
Hpy188I TCNGA 5 cut(s) 112, 360, 423, 496, 907
Hpy188III TCNNGA 5 cut(s) 124, 338, 596, 613, 634
Hpy8I GTNNAC 4 cut(s) 238, 268, 329, 740
Hpy99I CGWCG 1 cut(s) 470
HpyCH4III ACNGT 4 cut(s) 17, 242, 946, 967
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 5 cut(s) 170, 228, 321, 693, 708
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 303, 988
HpyF3I CTNAG 3 cut(s) 95, 420, 567
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 7 cut(s) 174, 206, 236, 409, 616, 660, 888
HspAI GCGC 1 cut(s) 527
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Kzo9I GATC 5 cut(s) 40, 334, 462, 592, 890
LmnI GCTCC 2 cut(s) 282, 455
Lsp1109I GCAGC 2 cut(s) 240, 677
LweI GCATC 1 cut(s) 695
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 29
MalI GATC 5 cut(s) 42, 336, 464, 594, 892
MboI GATC 5 cut(s) 40, 334, 462, 592, 890
MboII GAAGA 3 cut(s) 92, 399, 830
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 503, 656
MluCI AATT 5 cut(s) 354, 390, 425, 505, 766
MlyI GAGTC 2 cut(s) 215, 263
MroNI GCCGGC 1 cut(s) 196
MseI TTAA 4 cut(s) 87, 149, 441, 573
MslI CAYNNNNRTG 1 cut(s) 932
MspI CCGG 3 cut(s) 197, 365, 838
MspR9I CCNGG 1 cut(s) 839
MwoI GCNNNNNNNGC 3 cut(s) 197, 303, 988
NaeI GCCGGC 1 cut(s) 198
NciI CCSGG 1 cut(s) 839
NcoI CCATGG 1 cut(s) 656
NdeII GATC 5 cut(s) 40, 334, 462, 592, 890
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 7 cut(s) 174, 206, 236, 409, 616, 660, 888
NlaIV GGNNCC 4 cut(s) 159, 305, 336, 540
NsbI TGCGCA 1 cut(s) 528
NspI RCATGY 1 cut(s) 174
PagI TCATGA 1 cut(s) 612
PaqCI CACCTGC 1 cut(s) 699
PdiI GCCGGC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 491, 832
PflMI CCANNNNNTGG 1 cut(s) 662
PkrI GCNGC 2 cut(s) 230, 692
PleI GAGTC 2 cut(s) 214, 263
PpsI GAGTC 2 cut(s) 214, 263
Ppu21I YACGTR 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 91
PspN4I GGNNCC 4 cut(s) 159, 305, 336, 540
PspPI GGNCC 2 cut(s) 91, 157
PspPPI RGGWCCY 1 cut(s) 91
PstI CTGCAG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 4 cut(s) 244, 312, 586, 754
RsaNI GTAC 4 cut(s) 243, 311, 585, 753
RseI CAYNNNNRTG 1 cut(s) 932
SaqAI TTAA 4 cut(s) 87, 149, 441, 573
SatI GCNGC 2 cut(s) 229, 691
Sau3AI GATC 5 cut(s) 40, 334, 462, 592, 890
Sau96I GGNCC 2 cut(s) 91, 157
SchI GAGTC 2 cut(s) 215, 263
ScrFI CCNGG 1 cut(s) 839
SduI GDGCHC 2 cut(s) 503, 656
SfaNI GCATC 1 cut(s) 695
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 932
Sse9I AATT 5 cut(s) 354, 390, 425, 505, 766
SsiI CCGC 4 cut(s) 9, 453, 580, 714
StyD4I CCNGG 1 cut(s) 837
StyI CCWWGG 2 cut(s) 542, 656
TaaI ACNGT 4 cut(s) 17, 242, 946, 967
TaiI ACGT 1 cut(s) 267
TaqI TCGA 3 cut(s) 39, 465, 790
TasI AATT 5 cut(s) 354, 390, 425, 505, 766
TatI WGTACW 2 cut(s) 242, 752
TfiI GAWTC 2 cut(s) 491, 832
Tru1I TTAA 4 cut(s) 87, 149, 441, 573
Tru9I TTAA 4 cut(s) 87, 149, 441, 573
TscAI CASTG 4 cut(s) 336, 489, 536, 647
TseI GCWGC 2 cut(s) 228, 690
TspDTI ATGAA 8 cut(s) 17, 25, 93, 722, 894, 950, 971, 992
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 4 cut(s) 336, 489, 536, 647
Van91I CCANNNNNTGG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 91
XagI CCTNNNNNAGG 1 cut(s) 24
XapI RAATTY 3 cut(s) 390, 425, 766
XceI RCATGY 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.