Prupe.3G107200_v2.0.a1

In Between Ring fingers

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
8529709 .. 8531724
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G107200.1

Sequence Viewer

Length: 945 bp
ATGGCACAAGAATTAGCCTCTGGTAATCTTCATCTCAATGTTGACGATTTCTACTTCTCAGCACTATTTGATCAGAGTGATCATGAAGACGAAAATGACCCAGTCTCAGATTCCAAATATGCAGAAGAGTTGCAGTTCCAGGAGGCTCTAATGTCTTCTTCGATCGCTTCCCAAATGACACTCAATGTTGGGTCGTCTTCCTCCTCTGCCACCGCCGCCGCCTCCTCCTCCTCCTCCTCATCATCAACAACAATAATCCAAGCTTCCCAAGCAACCCAATCCACCCCAATTCATGAAACCCTAAACCCAATTCAGCCACATATCTTCTGTGGGATTTGTGTTGAAATGAAGGAGGCTGCCCAGATGTTCAGAACTGAGAGCTGTGGTCACTCCTTTTGCTCTGACTGCATAGCCAAACATGCTGCCTCAAAAATCCAAGACAACATTCACATTGTTGTTTGCCCTGGCTTGGGCTGCAAGGCTGTGATTGAGCTTGATGCTTGCAGGCCAATGCTTCCCAGAGAGGTTCTTGAGAGGTGGAATGATGCCCTCTGTGAGGCTTTGGTTCTTGGGGCACAAAGACTTTACTGCCCTTTTAGTGATTGCTCACTAGTTTTGATGATTGATGATGAAGGTGAAGGCATAAGAGAGTCAGAGTGCCCTGCTTGCCATAGATTGTTCTGTGCAAGATGCCAAGTGCCATGGCACCCAGGGGTTGATTGTGAGGAGTTTCAGAGGCTTAATGAGGATGAGAGAGGGAGGGCTGATCTTATGGTGAAGGAGCTTGCAAAGCTGAAGAAGTGGAGGAGGTGCCCTAAGTGCAAATTTTATGTGGAGAAGACTCAAGGTTGTTTGCACATTTCTTGCAGGTGCCAATTCCAGTTCTGCTATGGATGTGGAGGAGAATGGAATTCTGTTCATGATGGTAGTTGCGTGAGAGATTAA

Protein Analysis

315

Amino Acids

34.82

Weight (kDa)

5.04

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 858
Acc36I ACCTGC 1 cut(s) 858
AccB1I GGYRCC 3 cut(s) 705, 810, 870
AciI CCGC 3 cut(s) 213, 216, 219
AcsI RAATTY 2 cut(s) 824, 910
AcuI CTGAAG 1 cut(s) 815
AfiI CCNNNNNNNGG 3 cut(s) 469, 470, 556
AgsI TTSAA 1 cut(s) 344
AhlI ACTAGT 1 cut(s) 610
AjnI CCWGG 3 cut(s) 138, 463, 709
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AluBI AGCT 5 cut(s) 263, 381, 493, 784, 793
AluI AGCT 5 cut(s) 263, 381, 493, 784, 793
Alw26I GTCTC 1 cut(s) 109
AoxI GGCC 1 cut(s) 506
ApeKI GCWGC 3 cut(s) 356, 422, 474
ApoI RAATTY 2 cut(s) 824, 910
AsuHPI GGTGA 2 cut(s) 647, 787
BaeGI GKGCMC 3 cut(s) 577, 662, 815
BanI GGYRCC 3 cut(s) 705, 810, 870
BbsI GAAGAC 4 cut(s) 93, 147, 189, 845
BbvI GCAGC 3 cut(s) 343, 409, 461
BccI CCATC 1 cut(s) 917
BciT130I CCWGG 3 cut(s) 140, 465, 711
BclI TGATCA 2 cut(s) 70, 79
BcoDI GTCTC 1 cut(s) 109
BcuI ACTAGT 1 cut(s) 610
BfaI CTAG 1 cut(s) 611
BfuAI ACCTGC 1 cut(s) 858
BisI GCNGC 5 cut(s) 216, 219, 357, 423, 475
BlsI GCNGC 5 cut(s) 217, 220, 358, 424, 476
Bme1390I CCNGG 3 cut(s) 140, 465, 711
BmiI GGNNCC 3 cut(s) 707, 812, 872
BmrFI CCNGG 3 cut(s) 140, 465, 711
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 3 cut(s) 487, 535, 680
BmuI ACTGGG 1 cut(s) 95
BpiI GAAGAC 4 cut(s) 93, 147, 189, 845
BpuEI CTTGAG 2 cut(s) 551, 828
BsaJI CCNNGG 4 cut(s) 463, 701, 709, 710
Bsc4I CCNNNNNNNGG 3 cut(s) 469, 470, 556
Bse1I ACTGG 2 cut(s) 101, 880
BseBI CCWGG 3 cut(s) 140, 465, 711
BseDI CCNNGG 4 cut(s) 463, 701, 709, 710
BseGI GGATG 2 cut(s) 754, 899
BseLI CCNNNNNNNGG 3 cut(s) 469, 470, 556
BseMII CTCAG 3 cut(s) 72, 120, 366
BseNI ACTGG 2 cut(s) 101, 880
BseRI GAGGAG 9 cut(s) 193, 214, 217, 220, 223, 226, 740, 820, 915
BseSI GKGCMC 3 cut(s) 577, 662, 815
BseXI GCAGC 3 cut(s) 343, 409, 461
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 508
BshNI GGYRCC 3 cut(s) 705, 810, 870
BsiEI CGRYCG 1 cut(s) 165
BslI CCNNNNNNNGG 3 cut(s) 469, 470, 556
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 1 cut(s) 508
Bsp1286I GDGCHC 3 cut(s) 577, 662, 815
Bsp143I GATC 4 cut(s) 70, 79, 162, 766
Bsp19I CCATGG 1 cut(s) 701
BspACI CCGC 3 cut(s) 213, 216, 219
BspANI GGCC 1 cut(s) 508
BspCNI CTCAG 3 cut(s) 71, 119, 367
BspHI TCATGA 3 cut(s) 82, 292, 919
BspLI GGNNCC 3 cut(s) 707, 812, 872
BspMI ACCTGC 1 cut(s) 858
BspT107I GGYRCC 3 cut(s) 705, 810, 870
BsrI ACTGG 2 cut(s) 101, 880
BssECI CCNNGG 4 cut(s) 463, 701, 709, 710
BssMI GATC 4 cut(s) 70, 79, 162, 766
BssT1I CCWWGG 1 cut(s) 701
Bst2UI CCWGG 3 cut(s) 140, 465, 711
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 4 cut(s) 502, 506, 667, 786
BstDEI CTNAG 4 cut(s) 58, 106, 375, 816
BstDSI CCRYGG 1 cut(s) 701
BstENI CCTNNNNNAGG 1 cut(s) 554
BstF5I GGATG 2 cut(s) 754, 899
BstKTI GATC 4 cut(s) 73, 82, 165, 769
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 4 cut(s) 70, 79, 162, 766
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 8 cut(s) 215, 269, 405, 419, 474, 666, 790, 819
BstNI CCWGG 3 cut(s) 140, 465, 711
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 3 cut(s) 138, 463, 709
BstSLI GKGCMC 3 cut(s) 577, 662, 815
BstV1I GCAGC 3 cut(s) 343, 409, 461
BstV2I GAAGAC 4 cut(s) 93, 147, 189, 845
BsuRI GGCC 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 701
BtsCI GGATG 2 cut(s) 754, 899
BveI ACCTGC 1 cut(s) 858
Cac8I GCNNGC 4 cut(s) 502, 506, 667, 786
CciI TCATGA 3 cut(s) 82, 292, 919
CviAII CATG 5 cut(s) 83, 293, 419, 702, 920
DdeI CTNAG 4 cut(s) 58, 106, 375, 816
DpnI GATC 4 cut(s) 72, 81, 164, 768
DpnII GATC 4 cut(s) 70, 79, 162, 766
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 701
Eco57I CTGAAG 1 cut(s) 815
EcoNI CCTNNNNNAGG 1 cut(s) 554
EcoRI GAATTC 1 cut(s) 910
EcoRII CCWGG 3 cut(s) 138, 463, 709
EcoT14I CCWWGG 1 cut(s) 701
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 5 cut(s) 86, 296, 422, 705, 923
FatI CATG 5 cut(s) 82, 292, 418, 701, 919
FbaI TGATCA 2 cut(s) 70, 79
Fnu4HI GCNGC 5 cut(s) 216, 219, 357, 423, 475
FokI GGATG 2 cut(s) 761, 906
Fsp4HI GCNGC 5 cut(s) 216, 219, 357, 423, 475
FspBI CTAG 1 cut(s) 611
GluI GCNGC 5 cut(s) 216, 219, 357, 423, 475
HaeIII GGCC 1 cut(s) 508
Hin1II CATG 5 cut(s) 86, 296, 422, 705, 923
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 3 cut(s) 110, 650, 841
HphI GGTGA 2 cut(s) 647, 787
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 6 cut(s) 75, 109, 371, 403, 655, 735
Hpy188III TCNNGA 4 cut(s) 83, 293, 530, 920
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 4 cut(s) 343, 626, 632, 772
HpyF10VI GCNNNNNNNGC 8 cut(s) 215, 269, 405, 419, 474, 666, 790, 819
HpyF3I CTNAG 4 cut(s) 58, 106, 375, 816
Hsp92II CATG 5 cut(s) 86, 296, 422, 705, 923
Ksp22I TGATCA 2 cut(s) 70, 79
Kzo9I GATC 4 cut(s) 70, 79, 162, 766
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 3 cut(s) 343, 409, 461
LweI GCATC 3 cut(s) 487, 535, 680
MaeI CTAG 1 cut(s) 611
MaeIII GTNAC 1 cut(s) 386
MalI GATC 4 cut(s) 72, 81, 164, 768
MboI GATC 4 cut(s) 70, 79, 162, 766
MboII GAAGA 9 cut(s) 20, 98, 137, 147, 150, 189, 316, 808, 850
MhlI GDGCHC 3 cut(s) 577, 662, 815
MluCI AATT 6 cut(s) 11, 288, 309, 824, 875, 910
MlyI GAGTC 2 cut(s) 659, 835
MseI TTAA 2 cut(s) 741, 943
MslI CAYNNNNRTG 1 cut(s) 36
MspR9I CCNGG 3 cut(s) 140, 465, 711
MvaI CCWGG 3 cut(s) 140, 465, 711
MwoI GCNNNNNNNGC 8 cut(s) 215, 269, 405, 419, 474, 666, 790, 819
NcoI CCATGG 1 cut(s) 701
NdeII GATC 4 cut(s) 70, 79, 162, 766
NlaIII CATG 5 cut(s) 86, 296, 422, 705, 923
NlaIV GGNNCC 3 cut(s) 707, 812, 872
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 1 cut(s) 422
PagI TCATGA 3 cut(s) 82, 292, 919
PaqCI CACCTGC 1 cut(s) 858
PasI CCCWGGG 1 cut(s) 710
PfeI GAWTC 1 cut(s) 110
PflFI GACNNNGTC 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 5 cut(s) 217, 220, 358, 424, 476
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 2 cut(s) 658, 835
PpsI GAGTC 2 cut(s) 658, 835
Psp6I CCWGG 3 cut(s) 138, 463, 709
PspGI CCWGG 3 cut(s) 138, 463, 709
PspN4I GGNNCC 3 cut(s) 707, 812, 872
PsyI GACNNNGTC 1 cut(s) 101
PvuI CGATCG 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 2 cut(s) 741, 943
SatI GCNGC 5 cut(s) 216, 219, 357, 423, 475
Sau3AI GATC 4 cut(s) 70, 79, 162, 766
SchI GAGTC 2 cut(s) 659, 835
ScrFI CCNGG 3 cut(s) 140, 465, 711
SduI GDGCHC 3 cut(s) 577, 662, 815
SfaNI GCATC 3 cut(s) 487, 535, 680
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 530, 843
SmoI CTYRAG 2 cut(s) 530, 843
SpeI ACTAGT 1 cut(s) 610
Sse9I AATT 6 cut(s) 11, 288, 309, 824, 875, 910
SsiI CCGC 3 cut(s) 213, 216, 219
SspMI CTAG 1 cut(s) 611
StyD4I CCNGG 3 cut(s) 138, 463, 709
StyI CCWWGG 1 cut(s) 701
TaqI TCGA 1 cut(s) 161
TasI AATT 6 cut(s) 11, 288, 309, 824, 875, 910
TauI GCSGC 2 cut(s) 218, 221
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 2 cut(s) 741, 943
Tru9I TTAA 2 cut(s) 741, 943
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 3 cut(s) 356, 422, 474
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 7 cut(s) 20, 99, 281, 309, 362, 645, 908
Tth111I GACNNNGTC 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 554
XapI RAATTY 2 cut(s) 824, 910
XceI RCATGY 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 887
XspI CTAG 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.