E3 ubiquitin-protein ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| IBR | PF01485 | 156 - 217 | 5.8e-11 | IBR domain, a half RING-finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 615 |
| AccBSI | CCGCTC | 1 cut(s) | 682 |
| AciI | CCGC | 2 cut(s) | 682, 724 |
| AcsI | RAATTY | 4 cut(s) | 164, 217, 232, 264 |
| AcuI | CTGAAG | 1 cut(s) | 474 |
| AcyI | GRCGYC | 1 cut(s) | 303 |
| AfeI | AGCGCT | 1 cut(s) | 478 |
| AgsI | TTSAA | 4 cut(s) | 216, 231, 368, 529 |
| AluBI | AGCT | 4 cut(s) | 35, 102, 364, 667 |
| AluI | AGCT | 4 cut(s) | 35, 102, 364, 667 |
| Alw21I | GWGCWC | 1 cut(s) | 104 |
| Alw26I | GTCTC | 4 cut(s) | 35, 327, 482, 496 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 667 |
| Ama87I | CYCGRG | 1 cut(s) | 425 |
| Aor51HI | AGCGCT | 1 cut(s) | 478 |
| ApeKI | GCWGC | 2 cut(s) | 315, 445 |
| ApoI | RAATTY | 4 cut(s) | 164, 217, 232, 264 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 657 |
| AspLEI | GCGC | 2 cut(s) | 479, 616 |
| AvaI | CYCGRG | 1 cut(s) | 425 |
| BaeGI | GKGCMC | 1 cut(s) | 590 |
| BanII | GRGCYC | 2 cut(s) | 30, 104 |
| BbsI | GAAGAC | 1 cut(s) | 75 |
| Bbv12I | GWGCWC | 1 cut(s) | 104 |
| BbvCI | CCTCAGC | 1 cut(s) | 704 |
| BbvI | GCAGC | 2 cut(s) | 327, 432 |
| BccI | CCATC | 2 cut(s) | 551, 682 |
| BceAI | ACGGC | 1 cut(s) | 127 |
| BcoDI | GTCTC | 4 cut(s) | 35, 327, 482, 496 |
| BfaI | CTAG | 2 cut(s) | 177, 419 |
| BfmI | CTRYAG | 1 cut(s) | 328 |
| BfoI | RGCGCY | 1 cut(s) | 480 |
| BisI | GCNGC | 3 cut(s) | 316, 446, 725 |
| BlsI | GCNGC | 3 cut(s) | 317, 447, 726 |
| BmeT110I | CYCGRG | 1 cut(s) | 425 |
| BmiI | GGNNCC | 4 cut(s) | 27, 243, 627, 710 |
| BmsI | GCATC | 2 cut(s) | 64, 365 |
| BpiI | GAAGAC | 1 cut(s) | 75 |
| Bpu10I | CCTNAGC | 1 cut(s) | 704 |
| BpuEI | CTTGAG | 1 cut(s) | 183 |
| BsaAI | YACGTR | 2 cut(s) | 352, 485 |
| BsaHI | GRCGYC | 1 cut(s) | 303 |
| BsaI | GGTCTC | 2 cut(s) | 482, 496 |
| BsaJI | CCNNGG | 1 cut(s) | 629 |
| BsaWI | WCCGGW | 1 cut(s) | 244 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 724, 754 |
| BseDI | CCNNGG | 1 cut(s) | 629 |
| BseGI | GGATG | 2 cut(s) | 356, 562 |
| BseMII | CTCAG | 4 cut(s) | 30, 117, 491, 695 |
| BseRI | GAGGAG | 1 cut(s) | 114 |
| BseSI | GKGCMC | 1 cut(s) | 590 |
| BseXI | GCAGC | 2 cut(s) | 327, 432 |
| BsiHKAI | GWGCWC | 1 cut(s) | 104 |
| BsiHKCI | CYCGRG | 1 cut(s) | 425 |
| BsiSI | CCGG | 1 cut(s) | 245 |
| BslFI | GGGAC | 3 cut(s) | 383, 507, 574 |
| BsmAI | GTCTC | 4 cut(s) | 35, 327, 482, 496 |
| BsmFI | GGGAC | 3 cut(s) | 383, 507, 574 |
| BsmI | GAATGC | 1 cut(s) | 653 |
| Bso31I | GGTCTC | 2 cut(s) | 482, 496 |
| BsoBI | CYCGRG | 1 cut(s) | 425 |
| Bsp1286I | GDGCHC | 3 cut(s) | 30, 104, 590 |
| BspACI | CCGC | 2 cut(s) | 682, 724 |
| BspCNI | CTCAG | 4 cut(s) | 31, 116, 492, 696 |
| BspLI | GGNNCC | 4 cut(s) | 27, 243, 627, 710 |
| BspTNI | GGTCTC | 2 cut(s) | 482, 496 |
| BsrBI | CCGCTC | 1 cut(s) | 682 |
| BssECI | CCNNGG | 1 cut(s) | 629 |
| BssNI | GRCGYC | 1 cut(s) | 303 |
| BssT1I | CCWWGG | 1 cut(s) | 629 |
| Bst4CI | ACNGT | 3 cut(s) | 329, 521, 792 |
| Bst6I | CTCTTC | 2 cut(s) | 363, 648 |
| BstACI | GRCGYC | 1 cut(s) | 303 |
| BstBAI | YACGTR | 2 cut(s) | 352, 485 |
| BstC8I | GCNNGC | 1 cut(s) | 289 |
| BstDEI | CTNAG | 5 cut(s) | 39, 103, 237, 500, 704 |
| BstF5I | GGATG | 2 cut(s) | 356, 562 |
| BstH2I | RGCGCY | 1 cut(s) | 480 |
| BstHHI | GCGC | 2 cut(s) | 479, 616 |
| BstMAI | GTCTC | 4 cut(s) | 35, 327, 482, 496 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 390 |
| BstSFI | CTRYAG | 1 cut(s) | 328 |
| BstSLI | GKGCMC | 1 cut(s) | 590 |
| BstV1I | GCAGC | 2 cut(s) | 327, 432 |
| BstV2I | GAAGAC | 1 cut(s) | 75 |
| BtsCI | GGATG | 2 cut(s) | 356, 562 |
| BtsI | GCAGTG | 1 cut(s) | 623 |
| BtsIMutI | CAGTG | 1 cut(s) | 623 |
| Cac8I | GCNNGC | 1 cut(s) | 289 |
| CaiI | CAGNNNCTG | 1 cut(s) | 667 |
| CfoI | GCGC | 2 cut(s) | 479, 616 |
| CseI | GACGC | 1 cut(s) | 292 |
| CviAII | CATG | 3 cut(s) | 493, 700, 773 |
| CviJI | RGCY | 7 cut(s) | 17, 28, 35, 102, 318, 364, 667 |
| CviKI_1 | RGCY | 7 cut(s) | 17, 28, 35, 102, 318, 364, 667 |
| DdeI | CTNAG | 5 cut(s) | 39, 103, 237, 500, 704 |
| Eam1104I | CTCTTC | 2 cut(s) | 363, 648 |
| EarI | CTCTTC | 2 cut(s) | 363, 648 |
| Ecl136II | GAGCTC | 1 cut(s) | 102 |
| Eco130I | CCWWGG | 1 cut(s) | 629 |
| Eco24I | GRGCYC | 2 cut(s) | 30, 104 |
| Eco31I | GGTCTC | 2 cut(s) | 482, 496 |
| Eco32I | GATATC | 1 cut(s) | 697 |
| Eco47III | AGCGCT | 1 cut(s) | 478 |
| Eco53kI | GAGCTC | 1 cut(s) | 102 |
| Eco57I | CTGAAG | 1 cut(s) | 474 |
| Eco88I | CYCGRG | 1 cut(s) | 425 |
| EcoICRI | GAGCTC | 1 cut(s) | 102 |
| EcoRV | GATATC | 1 cut(s) | 697 |
| EcoT14I | CCWWGG | 1 cut(s) | 629 |
| EcoT38I | GRGCYC | 2 cut(s) | 30, 104 |
| ErhI | CCWWGG | 1 cut(s) | 629 |
| FaeI | CATG | 3 cut(s) | 496, 703, 776 |
| FaqI | GGGAC | 3 cut(s) | 383, 507, 574 |
| FatI | CATG | 3 cut(s) | 492, 699, 772 |
| FauI | CCCGC | 1 cut(s) | 675 |
| Fnu4HI | GCNGC | 3 cut(s) | 316, 446, 725 |
| FokI | GGATG | 2 cut(s) | 343, 569 |
| FriOI | GRGCYC | 2 cut(s) | 30, 104 |
| Fsp4HI | GCNGC | 3 cut(s) | 316, 446, 725 |
| FspBI | CTAG | 2 cut(s) | 177, 419 |
| FspI | TGCGCA | 1 cut(s) | 615 |
| GlaI | GCGC | 2 cut(s) | 478, 615 |
| GluI | GCNGC | 3 cut(s) | 316, 446, 725 |
| HaeII | RGCGCY | 1 cut(s) | 480 |
| HapII | CCGG | 1 cut(s) | 245 |
| HgaI | GACGC | 1 cut(s) | 292 |
| HhaI | GCGC | 2 cut(s) | 479, 616 |
| Hin1I | GRCGYC | 1 cut(s) | 303 |
| Hin1II | CATG | 3 cut(s) | 496, 703, 776 |
| Hin6I | GCGC | 2 cut(s) | 477, 614 |
| HinP1I | GCGC | 2 cut(s) | 477, 614 |
| HincII | GTYRAC | 1 cut(s) | 142 |
| HindII | GTYRAC | 1 cut(s) | 142 |
| HindIII | AAGCTT | 2 cut(s) | 33, 362 |
| HinfI | GANTC | 6 cut(s) | 43, 173, 293, 496, 578, 782 |
| HpaI | GTTAAC | 1 cut(s) | 142 |
| HpaII | CCGG | 1 cut(s) | 245 |
| Hpy166II | GTNNAC | 2 cut(s) | 61, 142 |
| Hpy188I | TCNGA | 7 cut(s) | 40, 106, 325, 454, 501, 583, 663 |
| Hpy188III | TCNNGA | 1 cut(s) | 200 |
| Hpy8I | GTNNAC | 2 cut(s) | 61, 142 |
| HpyAV | CCTTC | 1 cut(s) | 535 |
| HpyCH4III | ACNGT | 3 cut(s) | 329, 521, 792 |
| HpyCH4IV | ACGT | 2 cut(s) | 351, 484 |
| HpyCH4V | TGCA | 3 cut(s) | 315, 339, 408 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 390 |
| HpyF3I | CTNAG | 5 cut(s) | 39, 103, 237, 500, 704 |
| HpySE526I | ACGT | 2 cut(s) | 351, 484 |
| Hsp92I | GRCGYC | 1 cut(s) | 303 |
| Hsp92II | CATG | 3 cut(s) | 496, 703, 776 |
| HspAI | GCGC | 2 cut(s) | 477, 614 |
| KspAI | GTTAAC | 1 cut(s) | 142 |
| LmnI | GCTCC | 1 cut(s) | 25 |
| LpnPI | CCDG | 7 cut(s) | 150, 258, 301, 408, 414, 551, 781 |
| Lsp1109I | GCAGC | 2 cut(s) | 327, 432 |
| LweI | GCATC | 2 cut(s) | 64, 365 |
| MaeI | CTAG | 2 cut(s) | 177, 419 |
| MaeII | ACGT | 2 cut(s) | 351, 484 |
| MaeIII | GTNAC | 1 cut(s) | 414 |
| MbiI | CCGCTC | 1 cut(s) | 682 |
| MboII | GAAGA | 6 cut(s) | 80, 173, 201, 204, 380, 665 |
| MhlI | GDGCHC | 3 cut(s) | 30, 104, 590 |
| MluCI | AATT | 9 cut(s) | 93, 164, 217, 232, 264, 310, 346, 388, 592 |
| MlyI | GAGTC | 3 cut(s) | 37, 182, 302 |
| MnlI | CCTC | 6 cut(s) | 135, 459, 460, 547, 685, 699 |
| MroXI | GAANNNNTTC | 1 cut(s) | 657 |
| MseI | TTAA | 2 cut(s) | 141, 387 |
| MspI | CCGG | 1 cut(s) | 245 |
| Mva1269I | GAATGC | 1 cut(s) | 653 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 390 |
| NlaIII | CATG | 3 cut(s) | 496, 703, 776 |
| NlaIV | GGNNCC | 4 cut(s) | 27, 243, 627, 710 |
| NmuCI | GTSAC | 1 cut(s) | 414 |
| NsbI | TGCGCA | 1 cut(s) | 615 |
| PctI | GAATGC | 1 cut(s) | 653 |
| PdmI | GAANNNNTTC | 1 cut(s) | 657 |
| PfeI | GAWTC | 3 cut(s) | 496, 578, 782 |
| PkrI | GCNGC | 3 cut(s) | 317, 447, 726 |
| PleI | GAGTC | 3 cut(s) | 37, 181, 301 |
| PpsI | GAGTC | 3 cut(s) | 37, 181, 301 |
| Ppu21I | YACGTR | 2 cut(s) | 352, 485 |
| Psp124BI | GAGCTC | 1 cut(s) | 104 |
| PspN4I | GGNNCC | 4 cut(s) | 27, 243, 627, 710 |
| PstNI | CAGNNNCTG | 1 cut(s) | 667 |
| SacI | GAGCTC | 1 cut(s) | 104 |
| SaqAI | TTAA | 2 cut(s) | 141, 387 |
| SatI | GCNGC | 3 cut(s) | 316, 446, 725 |
| SchI | GAGTC | 3 cut(s) | 37, 182, 302 |
| SduI | GDGCHC | 3 cut(s) | 30, 104, 590 |
| SfaNI | GCATC | 2 cut(s) | 64, 365 |
| SfcI | CTRYAG | 1 cut(s) | 328 |
| SmlI | CTYRAG | 1 cut(s) | 198 |
| SmoI | CTYRAG | 1 cut(s) | 198 |
| Sse9I | AATT | 9 cut(s) | 93, 164, 217, 232, 264, 310, 346, 388, 592 |
| SsiI | CCGC | 2 cut(s) | 682, 724 |
| SspMI | CTAG | 2 cut(s) | 177, 419 |
| SstI | GAGCTC | 1 cut(s) | 104 |
| StyI | CCWWGG | 1 cut(s) | 629 |
| TaaI | ACNGT | 3 cut(s) | 329, 521, 792 |
| TaiI | ACGT | 2 cut(s) | 354, 487 |
| TaqI | TCGA | 3 cut(s) | 127, 222, 539 |
| TasI | AATT | 9 cut(s) | 93, 164, 217, 232, 264, 310, 346, 388, 592 |
| TauI | GCSGC | 1 cut(s) | 727 |
| TfiI | GAWTC | 3 cut(s) | 496, 578, 782 |
| Tru1I | TTAA | 2 cut(s) | 141, 387 |
| Tru9I | TTAA | 2 cut(s) | 141, 387 |
| TscAI | CASTG | 1 cut(s) | 623 |
| TseFI | GTSAC | 1 cut(s) | 414 |
| TseI | GCWGC | 2 cut(s) | 315, 445 |
| Tsp45I | GTSAC | 1 cut(s) | 414 |
| TspDTI | ATGAA | 4 cut(s) | 81, 136, 174, 660 |
| TspRI | CASTG | 1 cut(s) | 623 |
| XapI | RAATTY | 4 cut(s) | 164, 217, 232, 264 |
| XmnI | GAANNNNTTC | 1 cut(s) | 657 |
| XspI | CTAG | 2 cut(s) | 177, 419 |