Rh2DG480300

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000271
Physical Location & Seq
Reverse (-)
69435734 .. 69436408
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG480300.1

Sequence Viewer

Length: 498 bp
ATGGCTGCAACATTCTGCACCGATTGCATTGGAAGGTATGTTGGGTCTAAGATTCAGGAGATCATTTCAATGGTGAAGTGTCCTGATGTGAAATGCAAAGGAGTATTGGAGCCCCAGTCATGTAGCGATCCTATGGATGATGGAGGGGAAGTTGTGACTGCTTCGGAGTGCCCCAACTGCCGGAGACTCTTTTGTGCTCAATGCAGGGTTGTGTGGCATGCAGGGATTGATTGTAGTGAGTTTCAGAAGTTGAGTAGGGATGAAAGATGGATGGAAGATATCATGGTGATGGAGCTTGCTAAGAAACAGCAATGGAGGAGATGCCCAAGGTGCAAGTTCTATGTGGAGAAGACTGCTGGCTGCTCACACGTTACTTGCAGGCAGAATTCTGATTTGTTCTTTCTAATATGTGTGGATTCGAATTTTGCTATGGCTGTGGATCCAATTGGAGTAATTGCCATGGATGTAGAGCGAACTGAGAACTTGAAAGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-RING_UBOX

Protein Analysis

165

Amino Acids

18.67

Weight (kDa)

5.74

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 20 - 78 1e-08 IBR domain, a half RING-finger domain
IBR_1 PF22191 107 - 138 8.4e-06 IBR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 122, 434, 447
AcsI RAATTY 2 cut(s) 385, 421
AfiI CCNNNNNNNGG 1 cut(s) 180
AflIII ACRYGT 1 cut(s) 367
AgsI TTSAA 2 cut(s) 69, 487
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 3 cut(s) 122, 434, 447
ApeKI GCWGC 2 cut(s) 5, 360
ApoI RAATTY 2 cut(s) 385, 421
AsuHPI GGTGA 2 cut(s) 85, 298
AsuII TTCGAA 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 173
BamHI GGATCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 347
BccI CCATC 4 cut(s) 134, 261, 265, 283
BcoDI GTCTC 1 cut(s) 178
BisI GCNGC 2 cut(s) 6, 361
BlsI GCNGC 2 cut(s) 7, 362
BmiI GGNNCC 2 cut(s) 111, 441
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 311
BmuI ACTGGG 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 356
Bpu14I TTCGAA 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 326, 459
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 326, 459
BseGI GGATG 4 cut(s) 142, 265, 276, 469
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 331
BseSI GKGCMC 1 cut(s) 173
BseXI GCAGC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 178
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 3 cut(s) 114, 173, 199
Bsp143I GATC 3 cut(s) 60, 127, 439
Bsp19I CCATGG 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 469
BspLI GGNNCC 2 cut(s) 111, 441
BspPI GGATC 3 cut(s) 122, 434, 447
BspT104I TTCGAA 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 317
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 326, 459
BssMI GATC 3 cut(s) 60, 127, 439
BssT1I CCWWGG 2 cut(s) 326, 459
BstAPI GCANNNNNTGC 1 cut(s) 24
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 4 cut(s) 219, 297, 358, 380
BstDEI CTNAG 3 cut(s) 48, 300, 477
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 4 cut(s) 142, 265, 276, 469
BstKTI GATC 3 cut(s) 63, 130, 442
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 3 cut(s) 60, 127, 439
BstMWI GCNNNNNNNGC 3 cut(s) 24, 177, 330
BstNSI RCATGY 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 347
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 4 cut(s) 142, 265, 276, 469
Cac8I GCNNGC 4 cut(s) 219, 297, 358, 380
CviAII CATG 4 cut(s) 120, 218, 283, 460
CviJI RGCY 5 cut(s) 5, 112, 295, 360, 434
CviKI_1 RGCY 5 cut(s) 5, 112, 295, 360, 434
DdeI CTNAG 3 cut(s) 48, 300, 477
DpnI GATC 3 cut(s) 62, 129, 441
DpnII GATC 3 cut(s) 60, 127, 439
Eco130I CCWWGG 2 cut(s) 326, 459
Eco24I GRGCYC 1 cut(s) 114
Eco32I GATATC 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 385
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 326, 459
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 2 cut(s) 326, 459
FaeI CATG 4 cut(s) 123, 221, 286, 463
FaiI YATR 9 cut(s) 39, 121, 134, 219, 284, 342, 409, 431, 461
FatI CATG 4 cut(s) 119, 217, 282, 459
Fnu4HI GCNGC 2 cut(s) 6, 361
FokI GGATG 4 cut(s) 149, 272, 283, 476
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 6, 361
GluI GCNGC 2 cut(s) 6, 361
HapII CCGG 1 cut(s) 181
Hin1II CATG 4 cut(s) 123, 221, 286, 463
HinfI GANTC 3 cut(s) 52, 186, 416
HpaII CCGG 1 cut(s) 181
HphI GGTGA 2 cut(s) 85, 298
Hpy188I TCNGA 3 cut(s) 166, 246, 391
Hpy188III TCNNGA 2 cut(s) 56, 83
HpyAV CCTTC 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 8 cut(s) 8, 18, 27, 96, 204, 221, 333, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 177, 330
HpyF3I CTNAG 3 cut(s) 48, 300, 477
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 4 cut(s) 123, 221, 286, 463
Kzo9I GATC 3 cut(s) 60, 127, 439
LmnI GCTCC 2 cut(s) 109, 292
LpnPI CCDG 8 cut(s) 41, 96, 128, 190, 194, 207, 342, 364
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 1 cut(s) 311
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 2 cut(s) 154, 370
MalI GATC 3 cut(s) 62, 129, 441
MboI GATC 3 cut(s) 60, 127, 439
MboII GAAGA 2 cut(s) 287, 361
MfeI CAATTG 1 cut(s) 444
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 3 cut(s) 114, 173, 199
MluCI AATT 4 cut(s) 385, 421, 444, 453
MlyI GAGTC 1 cut(s) 180
MnlI CCTC 2 cut(s) 137, 309
MslI CAYNNNNRTG 2 cut(s) 68, 287
MspI CCGG 1 cut(s) 181
MunI CAATTG 1 cut(s) 444
MwoI GCNNNNNNNGC 3 cut(s) 24, 177, 330
NcoI CCATGG 1 cut(s) 459
NdeII GATC 3 cut(s) 60, 127, 439
NlaIII CATG 4 cut(s) 123, 221, 286, 463
NlaIV GGNNCC 2 cut(s) 111, 441
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 221
NspV TTCGAA 1 cut(s) 419
PaeI GCATGC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 52, 416
PkrI GCNGC 2 cut(s) 7, 362
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 111, 441
PsuI RGATCY 1 cut(s) 439
RseI CAYNNNNRTG 2 cut(s) 68, 287
SatI GCNGC 2 cut(s) 6, 361
Sau3AI GATC 3 cut(s) 60, 127, 439
SchI GAGTC 1 cut(s) 180
SduI GDGCHC 3 cut(s) 114, 173, 199
SetI ASST 5 cut(s) 38, 297, 332, 372, 493
SfaNI GCATC 1 cut(s) 311
SfuI TTCGAA 1 cut(s) 419
SmiMI CAYNNNNRTG 2 cut(s) 68, 287
SphI GCATGC 1 cut(s) 221
Sse9I AATT 4 cut(s) 385, 421, 444, 453
StyI CCWWGG 2 cut(s) 326, 459
TaiI ACGT 1 cut(s) 372
TaqI TCGA 1 cut(s) 419
TasI AATT 4 cut(s) 385, 421, 444, 453
TfiI GAWTC 2 cut(s) 52, 416
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 5, 360
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 276
XapI RAATTY 2 cut(s) 385, 421
XceI RCATGY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.