Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

9742245 .. 9743923

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1111900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAAAAAGAGCAGTCCCGCAAGCAATGCAAGACAAGTAATTGAAGTTGGGGAGTCTTCCAACTCCAAGAATGTCGACGGTGATCAGAAGGATTTTGTTTGTGAAATATGCGTCGAGTCCAAGGCTGCATCCGAGTCGTTTGGCATTAAAAGTTGCAGCCATTCATATTGTACGGACTGCATGGTCAAATACGTGTGCTCCAAGCTTCAAGAGACGTCACAAGCATCGGTTGCCCTAATCCTGTTTGGTTCCAAAAGGTTAGGTGCTTTCCTACCACAACATCCTGACTGTGCGTCGGGAACACTAGAGCCTGAGCACTGTCGTTCGATCCTACCCGCCAAGGTGTTTGAAAGTTGGGGAACTGCATTGTGTGAGGCTGTGATTCCTGCCTCTCAAAAGTTTTACTGTCTCTTCAAGAATTGCTCCCTAATGTTAATTATTGATCATGACGAGAACGAGGTTATTGATCATGACGAGAACGAGGTTGTGAGGCAATCGGAGTGCCCTAATTGTAAGAGATGCTTCTGTGTGCAATGTCTGGCTCCTTGGCACGTTGGGATCAAATGCGCTGAGTTTCAGAAATTGAATAAGGATGAGAGGGAAGCTGAAGATATCATGCTTCAAAAGAAAAATTGGAGGAGATGTCCCAACTGTAGGTTCTATGTGGAACGAATGGAGGGTTGCAATCTCATGGTGTGCAGGTGCGGAAGTTATTTCTGCTACAGATGCGGTAAGGTTTATTTGGAATGCAGGTGTGGAGTTAATGCTTGTTGCATTCCTCTGCTGTCCTGTTTGTGTTGTTTGTGTTGGAGGCGCCGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

275

Amino Acids

31.07

Weight (kDa)

7.83

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	129 - 189	3.4e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	690, 741
AasI	GACNNNNNNGTC	1 cut(s)	182
AatII	GACGTC	1 cut(s)	218
Acc36I	ACCTGC	2 cut(s)	690, 741
AccB1I	GGYRCC	1 cut(s)	813
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	5 cut(s)	18, 336, 705, 729, 820
AclWI	GGATC	2 cut(s)	322, 566
AcuI	CTGAAG	1 cut(s)	627
AcyI	GRCGYC	2 cut(s)	215, 814
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	654
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	6 cut(s)	44, 209, 350, 415, 586, 623
AhdI	GACNNNNNGTC	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AluBI	AGCT	2 cut(s)	205, 605
AluI	AGCT	2 cut(s)	205, 605
Alw21I	GWGCWC	2 cut(s)	200, 318
Alw26I	GTCTC	2 cut(s)	206, 413
AlwI	GGATC	2 cut(s)	322, 566
ApeKI	GCWGC	2 cut(s)	125, 156
AspLEI	GCGC	2 cut(s)	569, 816
AsuHPI	GGTGA	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	506
BanI	GGYRCC	1 cut(s)	813
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	2 cut(s)	200, 318
BbvI	GCAGC	2 cut(s)	112, 168
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BclI	TGATCA	3 cut(s)	82, 442, 466
BcoDI	GTCTC	2 cut(s)	206, 413
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	2 cut(s)	652, 721
BfoI	RGCGCY	1 cut(s)	817
BfuAI	ACCTGC	2 cut(s)	690, 741
BisI	GCNGC	2 cut(s)	126, 157
BlsI	GCNGC	2 cut(s)	127, 158
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	250, 543, 815
BmsI	GCATC	4 cut(s)	137, 233, 509, 716
BpiI	GAAGAC	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	193
BsaHI	GRCGYC	2 cut(s)	215, 814
BsaJI	CCNNGG	3 cut(s)	120, 339, 545
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 628, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse118I	RCCGGY	1 cut(s)	816
Bse3DI	GCAATG	2 cut(s)	31, 539
BseDI	CCNNGG	3 cut(s)	120, 339, 545
BseGI	GGATG	3 cut(s)	128, 280, 598
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMI	GCAATG	2 cut(s)	31, 539
BseMII	CTCAG	2 cut(s)	303, 561
BseRI	GAGGAG	1 cut(s)	652
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	2 cut(s)	112, 168
BsgI	GTGCAG	1 cut(s)	718
BshNI	GGYRCC	1 cut(s)	813
BsiHKAI	GWGCWC	2 cut(s)	200, 318
BsiSI	CCGG	1 cut(s)	817
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmAI	GTCTC	2 cut(s)	206, 413
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	630
BsmI	GAATGC	2 cut(s)	752, 774
Bsp1286I	GDGCHC	3 cut(s)	200, 318, 506
Bsp143I	GATC	5 cut(s)	82, 327, 442, 466, 558
BspACI	CCGC	5 cut(s)	18, 336, 705, 729, 820
BspCNI	CTCAG	2 cut(s)	304, 562
BspHI	TCATGA	2 cut(s)	445, 469
BspLI	GGNNCC	3 cut(s)	250, 543, 815
BspMI	ACCTGC	2 cut(s)	690, 741
BspPI	GGATC	2 cut(s)	322, 566
BspT107I	GGYRCC	1 cut(s)	813
BsrDI	GCAATG	2 cut(s)	31, 539
BsrFI	RCCGGY	1 cut(s)	816
BssAI	RCCGGY	1 cut(s)	816
BssECI	CCNNGG	3 cut(s)	120, 339, 545
BssMI	GATC	5 cut(s)	82, 327, 442, 466, 558
BssNI	GRCGYC	2 cut(s)	215, 814
BssT1I	CCWWGG	3 cut(s)	120, 339, 545
Bst4CI	ACNGT	5 cut(s)	80, 290, 320, 407, 653
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	2 cut(s)	215, 814
BstAPI	GCANNNNNTGC	2 cut(s)	26, 230
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	22, 818
BstDEI	CTNAG	2 cut(s)	312, 570
BstF5I	GGATG	3 cut(s)	128, 280, 598
BstH2I	RGCGCY	1 cut(s)	817
BstHHI	GCGC	2 cut(s)	569, 816
BstKTI	GATC	5 cut(s)	85, 330, 445, 469, 561
BstMAI	GTCTC	2 cut(s)	206, 413
BstMBI	GATC	5 cut(s)	82, 327, 442, 466, 558
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 230, 726
BstSFI	CTRYAG	2 cut(s)	652, 721
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	2 cut(s)	112, 168
BstV2I	GAAGAC	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	128, 280, 598
BtsIMutI	CAGTG	1 cut(s)	316
BveI	ACCTGC	2 cut(s)	690, 741
Cac8I	GCNNGC	2 cut(s)	22, 818
CciI	TCATGA	2 cut(s)	445, 469
CfoI	GCGC	2 cut(s)	569, 816
Cfr10I	RCCGGY	1 cut(s)	816
CseI	GACGC	2 cut(s)	100, 282
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	5 cut(s)	181, 446, 470, 616, 691
CviJI	RGCY	7 cut(s)	125, 159, 205, 310, 377, 542, 605
CviKI_1	RGCY	7 cut(s)	125, 159, 205, 310, 377, 542, 605
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	2 cut(s)	312, 570
DinI	GGCGCC	1 cut(s)	815
DpnI	GATC	5 cut(s)	84, 329, 444, 468, 560
DpnII	GATC	5 cut(s)	82, 327, 442, 466, 558
DrdI	GACNNNNNNGTC	1 cut(s)	182
DriI	GACNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	416
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	416
Eco130I	CCWWGG	3 cut(s)	120, 339, 545
Eco32I	GATATC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	627
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	3 cut(s)	120, 339, 545
EgeI	GGCGCC	1 cut(s)	815
EheI	GGCGCC	1 cut(s)	815
ErhI	CCWWGG	3 cut(s)	120, 339, 545
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	5 cut(s)	184, 449, 473, 619, 694
FaiI	YATR	8 cut(s)	109, 166, 182, 447, 471, 617, 663, 692
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	5 cut(s)	180, 445, 469, 615, 690
FauI	CCCGC	2 cut(s)	25, 343
FbaI	TGATCA	3 cut(s)	82, 442, 466
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	126, 157
FokI	GGATG	3 cut(s)	115, 267, 605
Fsp4HI	GCNGC	2 cut(s)	126, 157
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	2 cut(s)	568, 815
GluI	GCNGC	2 cut(s)	126, 157
HaeII	RGCGCY	1 cut(s)	817
HapII	CCGG	1 cut(s)	817
HgaI	GACGC	2 cut(s)	100, 282
HhaI	GCGC	2 cut(s)	569, 816
Hin1I	GRCGYC	2 cut(s)	215, 814
Hin1II	CATG	5 cut(s)	184, 449, 473, 619, 694
Hin6I	GCGC	2 cut(s)	567, 814
HinP1I	GCGC	2 cut(s)	567, 814
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	4 cut(s)	53, 116, 134, 382
HpaII	CCGG	1 cut(s)	817
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	4 cut(s)	87, 133, 499, 579
Hpy188III	TCNNGA	6 cut(s)	209, 284, 297, 415, 446, 470
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	3 cut(s)	80, 116, 298
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	5 cut(s)	80, 290, 320, 407, 653
HpyCH4IV	ACGT	3 cut(s)	192, 215, 552
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 230, 726
HpyF3I	CTNAG	2 cut(s)	312, 570
HpySE526I	ACGT	3 cut(s)	192, 215, 552
Hsp92I	GRCGYC	2 cut(s)	215, 814
Hsp92II	CATG	5 cut(s)	184, 449, 473, 619, 694
HspAI	GCGC	2 cut(s)	567, 814
KasI	GGCGCC	1 cut(s)	813
KroI	GCCGGC	1 cut(s)	816
KroNI	GCCGGC	1 cut(s)	818
Ksp22I	TGATCA	3 cut(s)	82, 442, 466
Kzo9I	GATC	5 cut(s)	82, 327, 442, 466, 558
LmnI	GCTCC	3 cut(s)	203, 428, 547
LpnPI	CCDG	8 cut(s)	254, 297, 324, 399, 524, 685, 736, 802
Lsp1109I	GCAGC	2 cut(s)	112, 168
LweI	GCATC	4 cut(s)	137, 233, 509, 716
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	3 cut(s)	192, 215, 552
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	5 cut(s)	84, 329, 444, 468, 560
MboI	GATC	5 cut(s)	82, 327, 442, 466, 558
MboII	GAAGA	3 cut(s)	48, 403, 620
MhlI	GDGCHC	3 cut(s)	200, 318, 506
MluCI	AATT	6 cut(s)	39, 418, 435, 508, 581, 631
Mly113I	GGCGCC	1 cut(s)	814
MlyI	GAGTC	3 cut(s)	62, 125, 143
MmeI	TCCRAC	2 cut(s)	84, 788
MreI	CGCCGGCG	1 cut(s)	816
MroNI	GCCGGC	1 cut(s)	816
MseI	TTAA	3 cut(s)	147, 434, 762
MspI	CCGG	1 cut(s)	817
Mva1269I	GAATGC	2 cut(s)	752, 774
MwoI	GCNNNNNNNGC	3 cut(s)	26, 230, 726
NaeI	GCCGGC	1 cut(s)	818
NarI	GGCGCC	1 cut(s)	814
NdeII	GATC	5 cut(s)	82, 327, 442, 466, 558
NgoMIV	GCCGGC	1 cut(s)	816
NlaIII	CATG	5 cut(s)	184, 449, 473, 619, 694
NlaIV	GGNNCC	3 cut(s)	250, 543, 815
NmuCI	GTSAC	1 cut(s)	216
PagI	TCATGA	2 cut(s)	445, 469
PaqCI	CACCTGC	2 cut(s)	690, 741
PctI	GAATGC	2 cut(s)	752, 774
PdiI	GCCGGC	1 cut(s)	818
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	2 cut(s)	127, 158
PleI	GAGTC	3 cut(s)	61, 124, 142
PluTI	GGCGCC	1 cut(s)	817
PpsI	GAGTC	3 cut(s)	61, 124, 142
Ppu21I	YACGTR	1 cut(s)	193
PspN4I	GGNNCC	3 cut(s)	250, 543, 815
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SalI	GTCGAC	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	147, 434, 762
SatI	GCNGC	2 cut(s)	126, 157
Sau3AI	GATC	5 cut(s)	82, 327, 442, 466, 558
SchI	GAGTC	3 cut(s)	62, 125, 143
SduI	GDGCHC	3 cut(s)	200, 318, 506
SfaNI	GCATC	4 cut(s)	137, 233, 509, 716
SfcI	CTRYAG	2 cut(s)	652, 721
SfoI	GGCGCC	1 cut(s)	815
SgrAI	CRCCGGYG	1 cut(s)	816
Sse9I	AATT	6 cut(s)	39, 418, 435, 508, 581, 631
SsiI	CCGC	5 cut(s)	18, 336, 705, 729, 820
SspDI	GGCGCC	1 cut(s)	813
SspMI	CTAG	1 cut(s)	305
StyI	CCWWGG	3 cut(s)	120, 339, 545
TaaI	ACNGT	5 cut(s)	80, 290, 320, 407, 653
TaiI	ACGT	3 cut(s)	195, 218, 555
TaqI	TCGA	3 cut(s)	75, 114, 326
TasI	AATT	6 cut(s)	39, 418, 435, 508, 581, 631
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	3 cut(s)	147, 434, 762
Tru9I	TTAA	3 cut(s)	147, 434, 762
TscAI	CASTG	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	2 cut(s)	125, 156
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	2 cut(s)	17, 153
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	1 cut(s)	305
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.