Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

596094 .. 596684

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGATTTATCCATAACAGAAGTTGGGGAGTCTTTCAACTCGGAGAATACAAAGACCCAGCAGGCTTTTATCTGTGAAATCTGTGTTGAGCTCAAGGTAGCAGCATCCGAGTGGTTTGGCATAAAAAATTGCAGCCATGCTTATTGTAGGGACTGCATGGTCAGTTACGTGGCCTCCAAGCTTGAAGAAATCATCATAAGCATCCGGTGTCCCGATCCAGATTGCACATCCAGGCTCCTAGATCCCAAGCATTGCCGTTCGATCCTCTCCCGGAAGGTGTTTGAGAGGTGGGGAGTTGCCTTGTGTGAGGCTGTGGTTCCTGCCTCTCAAAAGTTTTACTGTCCCCGCAAGGATTGCTCGGCAATGCTAATCATTGATGATGATGGGAAGAAAGGGATGATCGTTGCTTGGCACGTAGGGTTTGAGTGTGCCAAGTTTCCGAAGTTGAACAAGGTTGAGAGGGAAAGGGAGAATATGTTGAGAAACCTTGCGAAGAAGGAACAACAGAGGAGATGTCCCAATTGCAGCTTCTATGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

181

Amino Acids

20.65

Weight (kDa)

7.89

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AciI	CCGC	1 cut(s)	346
AclWI	GGATC	3 cut(s)	209, 236, 256
AgsI	TTSAA	3 cut(s)	37, 185, 448
AjnI	CCWGG	1 cut(s)	230
AjuI	GAANNNNNNNTTGG	1 cut(s)	512
AluBI	AGCT	3 cut(s)	91, 181, 528
AluI	AGCT	3 cut(s)	91, 181, 528
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	3 cut(s)	209, 236, 256
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	3 cut(s)	101, 132, 525
AsuC2I	CCSGG	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	113, 144, 537
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	271
BfaI	CTAG	1 cut(s)	239
BisI	GCNGC	3 cut(s)	102, 133, 526
BlsI	GCNGC	3 cut(s)	103, 134, 527
Bme1390I	CCNGG	2 cut(s)	232, 271
BmiI	GGNNCC	2 cut(s)	236, 318
BmrFI	CCNGG	2 cut(s)	232, 271
BmsI	GCATC	2 cut(s)	113, 210
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	271
BsaAI	YACGTR	2 cut(s)	169, 415
BsaWI	WCCGGW	1 cut(s)	204
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 461, 491
Bse3DI	GCAATG	2 cut(s)	250, 369
BseBI	CCWGG	1 cut(s)	232
BseGI	GGATG	4 cut(s)	104, 201, 227, 402
BseMI	GCAATG	2 cut(s)	250, 369
BseRI	GAGGAG	1 cut(s)	523
BseXI	GCAGC	3 cut(s)	113, 144, 537
BseYI	CCCAGC	1 cut(s)	57
BshFI	GGCC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	205, 271
BslFI	GGGAC	4 cut(s)	164, 195, 327, 501
BsmFI	GGGAC	4 cut(s)	164, 195, 327, 501
BsnI	GGCC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	4 cut(s)	214, 241, 261, 399
BspACI	CCGC	1 cut(s)	346
BspANI	GGCC	1 cut(s)	173
BspLI	GGNNCC	2 cut(s)	236, 318
BspPI	GGATC	3 cut(s)	209, 236, 256
BsrDI	GCAATG	2 cut(s)	250, 369
BssMI	GATC	4 cut(s)	214, 241, 261, 399
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstBAI	YACGTR	2 cut(s)	169, 415
BstC8I	GCNNGC	1 cut(s)	63
BstF5I	GGATG	4 cut(s)	104, 201, 227, 402
BstKTI	GATC	4 cut(s)	217, 244, 264, 402
BstMBI	GATC	4 cut(s)	214, 241, 261, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	354
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	230, 269
BstV1I	GCAGC	3 cut(s)	113, 144, 537
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	4 cut(s)	104, 201, 227, 402
Cac8I	GCNNGC	1 cut(s)	63
CviAII	CATG	2 cut(s)	137, 157
CviJI	RGCY	8 cut(s)	65, 91, 135, 173, 181, 235, 311, 528
CviKI_1	RGCY	8 cut(s)	65, 91, 135, 173, 181, 235, 311, 528
DpnI	GATC	4 cut(s)	216, 243, 263, 401
DpnII	GATC	4 cut(s)	214, 241, 261, 399
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	2 cut(s)	140, 160
FaiI	YATR	7 cut(s)	14, 122, 138, 158, 197, 476, 534
FaqI	GGGAC	4 cut(s)	164, 195, 327, 501
FatI	CATG	2 cut(s)	136, 156
FauI	CCCGC	1 cut(s)	353
Fnu4HI	GCNGC	3 cut(s)	102, 133, 526
FokI	GGATG	4 cut(s)	91, 188, 214, 409
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	3 cut(s)	102, 133, 526
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	3 cut(s)	102, 133, 526
GsaI	CCCAGC	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	2 cut(s)	205, 271
Hin1II	CATG	2 cut(s)	140, 160
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	2 cut(s)	205, 271
Hpy188I	TCNGA	3 cut(s)	43, 109, 441
Hpy188III	TCNNGA	2 cut(s)	212, 218
HpyAV	CCTTC	2 cut(s)	268, 490
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	2 cut(s)	168, 414
HpyCH4V	TGCA	4 cut(s)	132, 156, 225, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	354
HpySE526I	ACGT	2 cut(s)	168, 414
Hsp92II	CATG	2 cut(s)	140, 160
Kzo9I	GATC	4 cut(s)	214, 241, 261, 399
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	8 cut(s)	47, 71, 217, 218, 231, 244, 284, 333
Lsp1109I	GCAGC	3 cut(s)	113, 144, 537
LweI	GCATC	2 cut(s)	113, 210
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	2 cut(s)	168, 414
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	4 cut(s)	216, 243, 263, 401
MboI	GATC	4 cut(s)	214, 241, 261, 399
MboII	GAAGA	3 cut(s)	197, 400, 505
MfeI	CAATTG	1 cut(s)	520
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	2 cut(s)	127, 520
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	7 cut(s)	184, 275, 279, 301, 334, 453, 501
MslI	CAYNNNNRTG	1 cut(s)	109
MspI	CCGG	2 cut(s)	205, 271
MspR9I	CCNGG	2 cut(s)	232, 271
MunI	CAATTG	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	354
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	4 cut(s)	214, 241, 261, 399
NlaIII	CATG	2 cut(s)	140, 160
NlaIV	GGNNCC	2 cut(s)	236, 318
NmeAIII	GCCGAG	1 cut(s)	338
PfoI	TCCNGGA	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	103, 134, 527
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Ppu21I	YACGTR	2 cut(s)	169, 415
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	236, 318
PsuI	RGATCY	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	109
SacI	GAGCTC	1 cut(s)	93
SatI	GCNGC	3 cut(s)	102, 133, 526
Sau3AI	GATC	4 cut(s)	214, 241, 261, 399
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	232, 271
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	2 cut(s)	113, 210
SmiMI	CAYNNNNRTG	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	127, 520
SsiI	CCGC	1 cut(s)	346
SspMI	CTAG	1 cut(s)	239
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	230, 269
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	2 cut(s)	171, 417
TaqI	TCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	127, 520
TseI	GCWGC	3 cut(s)	101, 132, 525
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.