Prupe.3G031900_v2.0.a1

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000271
Physical Location & Seq
Forward (+)
2382951 .. 2384981
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G031900.1

Sequence Viewer

Length: 888 bp
ATGGAGGGAACATCAAGCTCTGGTGAAGCTCTTGATTTGGTGGATGACTTTTACTTTTCAGCTCTTCATGATGAGGAAGTATTTCCCATCTCAGATGAGAAATATGCACATGAATTGCAGCTGCAAGAAGCCCTCATGTCCTCTGCAATCTCTTCAATAACTCCCAAAATTTCTACTCAACCCTCCAATAGAGAGGAAGATGTTGAAACCCCCATGAAAAAACAGAAGGGGAAGGAAAAAGAAACTGGCCAATCCTCTGAAACTTTCTGCTTGATCTGCATGGATGTAAAATCAACCCAAGAAATGTTCACAAACAGTGGCTGCAACCACTCATTTTGCACTGATTGCATTGGAACATATGTTGGGACTAAAATTCAGGAAAACATTTCAATGGTGAAGTGTCCTGATGTGAAGTGCAAAGAAGTGCTGGAGCCACAATCATGCCGGTCTATTATTCCCAAGGAAGTGTTTAATAGGTGGGAAAATGCTCTCTGTGAGTCTCTGGTTTTGGGGTCTCAGAAATTTTACTGCCCTTTTAAGGACTGTTCTGCTTTGCTGGTGGATGATGGAGGAGAGGTTGTGACTGTCTCCGAGTGCCCGAATTGTCGGAGACTGTTCTGTGCTCAGTGCAAGGTTGCATGGCATGCTGGGATTGACTGTGGGGAGTTTCAGAACTTGAATGAGAATGAGAGAGAGAAGGAAGATATCATGGTGATGGAGCTTGCAAAGAAGAAGAATTGGAGGAGGTGTCCCAGATGCAACTTCTTTGTGGAAAAGACTGATGGCTGCTTACACATTACATGCAGGTGTGGATTGGAGTTTTGCTACGGCTGTGGATCATATTGGCGTCACAGCCAATTTTCCAGTCATGCATTGTGGCCGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-RING_UBOX

Protein Analysis

296

Amino Acids

33.5

Weight (kDa)

5.16

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 795
Acc36I ACCTGC 1 cut(s) 795
AclWI GGATC 1 cut(s) 844
AcoI YGGCCR 2 cut(s) 247, 878
AcsI RAATTY 3 cut(s) 168, 372, 521
AcyI GRCGYC 1 cut(s) 847
AfiI CCNNNNNNNGG 1 cut(s) 538
AgsI TTSAA 4 cut(s) 156, 206, 390, 679
AluBI AGCT 5 cut(s) 18, 29, 62, 121, 721
AluI AGCT 5 cut(s) 18, 29, 62, 121, 721
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 4 cut(s) 504, 519, 592, 604
AlwI GGATC 1 cut(s) 844
AlwNI CAGNNNCTG 1 cut(s) 321
AoxI GGCC 2 cut(s) 247, 878
ApeKI GCWGC 4 cut(s) 118, 121, 321, 786
ApoI RAATTY 3 cut(s) 168, 372, 521
Asp700I GAANNNNTTC 1 cut(s) 81
AsuHPI GGTGA 3 cut(s) 35, 406, 724
BaeGI GKGCMC 1 cut(s) 599
BalI TGGCCA 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 4 cut(s) 108, 130, 308, 773
BccI CCATC 4 cut(s) 95, 560, 709, 776
BceAI ACGGC 1 cut(s) 844
BcoDI GTCTC 4 cut(s) 504, 519, 592, 604
BfuAI ACCTGC 1 cut(s) 795
BisI GCNGC 4 cut(s) 119, 122, 322, 787
BlsI GCNGC 4 cut(s) 120, 123, 323, 788
BmiI GGNNCC 1 cut(s) 432
BmsI GCATC 1 cut(s) 746
BpmI CTGGAG 1 cut(s) 449
BsaHI GRCGYC 1 cut(s) 847
BsaI GGTCTC 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 459, 881
BsaXI ACNNNNNCTCC 6 cut(s) 561, 564, 591, 594, 733, 763
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse118I RCCGGY 1 cut(s) 444
Bse1I ACTGG 2 cut(s) 250, 864
BseDI CCNNGG 2 cut(s) 459, 881
BseGI GGATG 3 cut(s) 49, 289, 568
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMII CTCAG 3 cut(s) 105, 530, 638
BseNI ACTGG 2 cut(s) 250, 864
BseRI GAGGAG 2 cut(s) 585, 757
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 4 cut(s) 108, 130, 308, 773
BseYI CCCAGC 1 cut(s) 647
BshFI GGCC 2 cut(s) 249, 880
BsiHKAI GWGCWC 1 cut(s) 625
BsiSI CCGG 1 cut(s) 445
BslFI GGGAC 2 cut(s) 379, 735
BslI CCNNNNNNNGG 1 cut(s) 538
BsmAI GTCTC 4 cut(s) 504, 519, 592, 604
BsmFI GGGAC 2 cut(s) 379, 735
BsnI GGCC 2 cut(s) 249, 880
Bso31I GGTCTC 1 cut(s) 519
Bsp1286I GDGCHC 2 cut(s) 599, 625
Bsp143I GATC 2 cut(s) 273, 836
BspANI GGCC 2 cut(s) 249, 880
BspCNI CTCAG 3 cut(s) 104, 529, 637
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 432
BspMI ACCTGC 1 cut(s) 795
BspPI GGATC 1 cut(s) 844
BspQI GCTCTTC 1 cut(s) 69
BspTNI GGTCTC 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 444
BsrI ACTGG 2 cut(s) 250, 864
BssAI RCCGGY 1 cut(s) 444
BssECI CCNNGG 2 cut(s) 459, 881
BssMI GATC 2 cut(s) 273, 836
BssNI GRCGYC 1 cut(s) 847
BssT1I CCWWGG 1 cut(s) 459
Bst4CI ACNGT 5 cut(s) 317, 545, 586, 615, 659
Bst6I CTCTTC 2 cut(s) 69, 157
BstACI GRCGYC 1 cut(s) 847
BstAPI GCANNNNNTGC 2 cut(s) 345, 644
BstC8I GCNNGC 2 cut(s) 645, 723
BstDEI CTNAG 3 cut(s) 91, 516, 624
BstF5I GGATG 3 cut(s) 49, 289, 568
BstKTI GATC 2 cut(s) 276, 839
BstMAI GTCTC 4 cut(s) 504, 519, 592, 604
BstMBI GATC 2 cut(s) 273, 836
BstMWI GCNNNNNNNGC 3 cut(s) 276, 345, 644
BstNSI RCATGY 2 cut(s) 647, 804
BstSLI GKGCMC 1 cut(s) 599
BstV1I GCAGC 4 cut(s) 108, 130, 308, 773
BsuRI GGCC 2 cut(s) 249, 880
BtsCI GGATG 3 cut(s) 49, 289, 568
BtsIMutI CAGTG 3 cut(s) 322, 339, 632
BveI ACCTGC 1 cut(s) 795
Cac8I GCNNGC 2 cut(s) 645, 723
CaiI CAGNNNCTG 1 cut(s) 321
CciI TCATGA 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 444
CseI GACGC 1 cut(s) 836
CspCI CAANNNNNGTGG 2 cut(s) 317, 352
DdeI CTNAG 3 cut(s) 91, 516, 624
DpnI GATC 2 cut(s) 275, 838
DpnII GATC 2 cut(s) 273, 836
EaeI YGGCCR 2 cut(s) 247, 878
Eam1104I CTCTTC 2 cut(s) 69, 157
EarI CTCTTC 2 cut(s) 69, 157
Eco130I CCWWGG 1 cut(s) 459
Eco31I GGTCTC 1 cut(s) 519
Eco32I GATATC 1 cut(s) 706
EcoRV GATATC 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 459
EcoT22I ATGCAT 1 cut(s) 874
ErhI CCWWGG 1 cut(s) 459
FaqI GGGAC 2 cut(s) 379, 735
FauNDI CATATG 1 cut(s) 358
Fnu4HI GCNGC 4 cut(s) 119, 122, 322, 787
FokI GGATG 3 cut(s) 56, 296, 575
Fsp4HI GCNGC 4 cut(s) 119, 122, 322, 787
GluI GCNGC 4 cut(s) 119, 122, 322, 787
GsaI CCCAGC 1 cut(s) 651
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 2 cut(s) 249, 880
HapII CCGG 1 cut(s) 445
HgaI GACGC 1 cut(s) 836
Hin1I GRCGYC 1 cut(s) 847
HinfI GANTC 1 cut(s) 497
HpaII CCGG 1 cut(s) 445
HphI GGTGA 3 cut(s) 35, 406, 724
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 6 cut(s) 94, 259, 519, 592, 609, 672
Hpy188III TCNNGA 4 cut(s) 32, 68, 377, 404
Hpy8I GTNNAC 1 cut(s) 309
HpyAV CCTTC 3 cut(s) 220, 226, 691
HpyCH4III ACNGT 5 cut(s) 317, 545, 586, 615, 659
HpyF10VI GCNNNNNNNGC 3 cut(s) 276, 345, 644
HpyF3I CTNAG 3 cut(s) 91, 516, 624
Hsp92I GRCGYC 1 cut(s) 847
Kzo9I GATC 2 cut(s) 273, 836
LguI GCTCTTC 1 cut(s) 69
LmnI GCTCC 2 cut(s) 430, 718
Lsp1109I GCAGC 4 cut(s) 108, 130, 308, 773
LweI GCATC 1 cut(s) 746
MaeIII GTNAC 2 cut(s) 580, 848
MalI GATC 2 cut(s) 275, 838
MboI GATC 2 cut(s) 273, 836
MboII GAAGA 6 cut(s) 56, 144, 209, 713, 742, 745
MhlI GDGCHC 2 cut(s) 599, 625
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 7 cut(s) 113, 168, 372, 521, 601, 736, 857
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 1 cut(s) 587
Mox20I TGGCCA 1 cut(s) 249
Mph1103I ATGCAT 1 cut(s) 874
MroXI GAANNNNTTC 1 cut(s) 81
MscI TGGCCA 1 cut(s) 249
MseI TTAA 2 cut(s) 471, 537
MslI CAYNNNNRTG 4 cut(s) 389, 439, 713, 805
Msp20I TGGCCA 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 1 cut(s) 445
MwoI GCNNNNNNNGC 3 cut(s) 276, 345, 644
NdeI CATATG 1 cut(s) 358
NdeII GATC 2 cut(s) 273, 836
NlaIV GGNNCC 1 cut(s) 432
NmuCI GTSAC 2 cut(s) 580, 848
NsiI ATGCAT 1 cut(s) 874
NspI RCATGY 2 cut(s) 647, 804
PaeI GCATGC 1 cut(s) 647
PagI TCATGA 1 cut(s) 67
PaqCI CACCTGC 1 cut(s) 795
PciSI GCTCTTC 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 81
PkrI GCNGC 4 cut(s) 120, 123, 323, 788
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PspFI CCCAGC 1 cut(s) 647
PspN4I GGNNCC 1 cut(s) 432
PstNI CAGNNNCTG 1 cut(s) 321
PvuII CAGCTG 1 cut(s) 121
RseI CAYNNNNRTG 4 cut(s) 389, 439, 713, 805
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 471, 537
SatI GCNGC 4 cut(s) 119, 122, 322, 787
Sau3AI GATC 2 cut(s) 273, 836
SchI GAGTC 1 cut(s) 506
SduI GDGCHC 2 cut(s) 599, 625
SfaNI GCATC 1 cut(s) 746
SmiMI CAYNNNNRTG 4 cut(s) 389, 439, 713, 805
SphI GCATGC 1 cut(s) 647
Sse9I AATT 7 cut(s) 113, 168, 372, 521, 601, 736, 857
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 5 cut(s) 317, 545, 586, 615, 659
TasI AATT 7 cut(s) 113, 168, 372, 521, 601, 736, 857
Tru1I TTAA 2 cut(s) 471, 537
Tru9I TTAA 2 cut(s) 471, 537
TscAI CASTG 3 cut(s) 322, 346, 632
TseFI GTSAC 2 cut(s) 580, 848
TseI GCWGC 4 cut(s) 118, 121, 321, 786
Tsp45I GTSAC 2 cut(s) 580, 848
TspDTI ATGAA 3 cut(s) 56, 126, 230
TspRI CASTG 3 cut(s) 322, 346, 632
XapI RAATTY 3 cut(s) 168, 372, 521
XceI RCATGY 2 cut(s) 647, 804
XmnI GAANNNNTTC 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.