Rmu_sc0005612.1_g000008

IBR domain, a half RING-finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005612.1
OG0000271
Physical Location & Seq
Reverse (-)
31015 .. 33491
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005612.1_g000008.1.cds

Sequence Viewer

Length: 621 bp
atgactgaggtttatgctaagtggggaaatgctttatgtgaggctataattgttgggtctcaaaggttttaccgtccctttcaggactgcttggcaacgttgattgatgatgggactgaggaggttgtaagggaatcggagtgccctaattgtaatagaatgttctgtgcgcaatgcaaagttccttggcatggctgcacggagttccagaaattgaataaggatgagagggaaaaggaggccggatatcatgtggtacagactctatttgtcgtggcttcttcattttcgtggcggacatcagacagaagtacctggaggaactgttcagtcgctgccgtcggtaaagctgctagtgaaaaatggaaatccttgtctcgtactgagaaagaatcttatgtggccaagtcacagcagtgccatgtttattgtacttattgtgttgtcaattacgtgaagtccaaactccaagaaaatgttacaagcattggatgccctgttcctgattgcaaagggtcacttgaccccgagtattgccggtcaattctgaagcccgaagtggggaaaagggatgtgcgaggccgtgattcttgggtctcagaaattttactgcccctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-C3HC4

Protein Analysis

206

Amino Acids

23.43

Weight (kDa)

7.88

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 171
AciI CCGC 1 cut(s) 295
AclI AACGTT 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 603
AcuI CTGAAG 1 cut(s) 569
AfaI GTAC 4 cut(s) 258, 313, 382, 433
AfiI CCNNNNNNNGG 3 cut(s) 191, 560, 561
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 314
AleI CACNNNNGTG 1 cut(s) 415
AloI GAACNNNNNNTCC 4 cut(s) 310, 342, 483, 515
AluBI AGCT 1 cut(s) 350
AluI AGCT 1 cut(s) 350
Alw26I GTCTC 3 cut(s) 63, 381, 601
AlwNI CAGNNNCTG 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 3 cut(s) 240, 402, 580
ApeKI GCWGC 3 cut(s) 195, 335, 350
ApoI RAATTY 1 cut(s) 603
AspLEI GCGC 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 527
BaeGI GKGCMC 1 cut(s) 146
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BalI TGGCCA 1 cut(s) 404
BbvI GCAGC 3 cut(s) 182, 322, 337
BccI CCATC 1 cut(s) 104
BceAI ACGGC 2 cut(s) 323, 567
BciT130I CCWGG 1 cut(s) 316
BcoDI GTCTC 3 cut(s) 63, 381, 601
BfaI CTAG 1 cut(s) 354
BisI GCNGC 3 cut(s) 196, 336, 351
BlsI GCNGC 3 cut(s) 197, 337, 352
Bme1390I CCNGG 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 527
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 337
BsaAI YACGTR 1 cut(s) 454
BsaI GGTCTC 2 cut(s) 63, 601
BsaJI CCNNGG 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 560, 561
Bse118I RCCGGY 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 3 cut(s) 229, 497, 577
BseLI CCNNNNNNNGG 3 cut(s) 191, 560, 561
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 3 cut(s) 108, 375, 612
BseRI GAGGAG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 3 cut(s) 182, 322, 337
BsgI GTGCAG 1 cut(s) 181
BshFI GGCC 3 cut(s) 242, 404, 582
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 2 cut(s) 243, 538
BslFI GGGAC 2 cut(s) 60, 127
BslI CCNNNNNNNGG 3 cut(s) 191, 560, 561
BsmAI GTCTC 3 cut(s) 63, 381, 601
BsmFI GGGAC 2 cut(s) 60, 127
BsnI GGCC 3 cut(s) 242, 404, 582
Bso31I GGTCTC 2 cut(s) 63, 601
BsoBI CYCGRG 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 146
BspACI CCGC 1 cut(s) 295
BspANI GGCC 3 cut(s) 242, 404, 582
BspCNI CTCAG 3 cut(s) 109, 376, 611
BspTNI GGTCTC 2 cut(s) 63, 601
BsrDI GCAATG 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 537
BssAI RCCGGY 1 cut(s) 537
BssECI CCNNGG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 74, 326
BstAPI GCANNNNNTGC 1 cut(s) 492
BstBAI YACGTR 1 cut(s) 454
BstDEI CTNAG 5 cut(s) 6, 18, 117, 384, 598
BstF5I GGATG 3 cut(s) 229, 497, 577
BstHHI GCGC 1 cut(s) 172
BstMAI GTCTC 3 cut(s) 63, 381, 601
BstMWI GCNNNNNNNGC 1 cut(s) 492
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 3 cut(s) 182, 322, 337
BsuRI GGCC 3 cut(s) 242, 404, 582
BtsCI GGATG 3 cut(s) 229, 497, 577
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 1 cut(s) 422
CaiI CAGNNNCTG 1 cut(s) 335
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 537
Csp6I GTAC 4 cut(s) 257, 312, 381, 432
CviAII CATG 3 cut(s) 191, 251, 422
CviJI RGCY 8 cut(s) 44, 195, 242, 278, 350, 404, 553, 582
CviKI_1 RGCY 8 cut(s) 44, 195, 242, 278, 350, 404, 553, 582
CviQI GTAC 4 cut(s) 257, 312, 381, 432
DdeI CTNAG 5 cut(s) 6, 18, 117, 384, 598
EaeI YGGCCR 1 cut(s) 402
EciI GGCGGA 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 185
Eco31I GGTCTC 2 cut(s) 63, 601
Eco32I GATATC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 314
EcoRV GATATC 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 3 cut(s) 194, 254, 425
FaiI YATR 7 cut(s) 15, 37, 47, 192, 252, 399, 423
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FaqI GGGAC 2 cut(s) 60, 127
FatI CATG 3 cut(s) 190, 250, 421
Fnu4HI GCNGC 3 cut(s) 196, 336, 351
FokI GGATG 3 cut(s) 236, 504, 584
Fsp4HI GCNGC 3 cut(s) 196, 336, 351
FspBI CTAG 1 cut(s) 354
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 1 cut(s) 171
GluI GCNGC 3 cut(s) 196, 336, 351
GsuI CTGGAG 1 cut(s) 337
HaeIII GGCC 3 cut(s) 242, 404, 582
HapII CCGG 2 cut(s) 243, 538
HhaI GCGC 1 cut(s) 172
Hin1II CATG 3 cut(s) 194, 254, 425
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 4 cut(s) 134, 262, 392, 587
HpaII CCGG 2 cut(s) 243, 538
Hpy188I TCNGA 4 cut(s) 139, 304, 549, 601
Hpy188III TCNNGA 3 cut(s) 83, 208, 503
Hpy99I CGWCG 1 cut(s) 344
HpyCH4III ACNGT 2 cut(s) 74, 326
HpyCH4IV ACGT 2 cut(s) 98, 453
HpyCH4V TGCA 3 cut(s) 177, 198, 510
HpyF10VI GCNNNNNNNGC 1 cut(s) 492
HpyF3I CTNAG 5 cut(s) 6, 18, 117, 384, 598
HpySE526I ACGT 2 cut(s) 98, 453
Hsp92II CATG 3 cut(s) 194, 254, 425
HspAI GCGC 1 cut(s) 170
LpnPI CCDG 8 cut(s) 68, 221, 256, 301, 328, 510, 516, 551
Lsp1109I GCAGC 3 cut(s) 182, 322, 337
LweI GCATC 1 cut(s) 482
MaeI CTAG 1 cut(s) 354
MaeII ACGT 2 cut(s) 98, 453
MaeIII GTNAC 3 cut(s) 408, 478, 516
MboII GAAGA 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 146
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 6 cut(s) 48, 148, 212, 448, 543, 603
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 7 cut(s) 34, 112, 115, 222, 232, 312, 572
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 1 cut(s) 619
MslI CAYNNNNRTG 2 cut(s) 289, 415
Msp20I TGGCCA 1 cut(s) 404
MspI CCGG 2 cut(s) 243, 538
MspR9I CCNGG 1 cut(s) 316
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 492
NlaIII CATG 3 cut(s) 194, 254, 425
NmuCI GTSAC 2 cut(s) 408, 516
NsbI TGCGCA 1 cut(s) 171
OliI CACNNNNGTG 1 cut(s) 415
PfeI GAWTC 3 cut(s) 134, 392, 587
PkrI GCNGC 3 cut(s) 197, 337, 352
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
Ppu21I YACGTR 1 cut(s) 454
Psp1406I AACGTT 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 335
RsaI GTAC 4 cut(s) 258, 313, 382, 433
RsaNI GTAC 4 cut(s) 257, 312, 381, 432
RseI CAYNNNNRTG 2 cut(s) 289, 415
SaqAI TTAA 1 cut(s) 619
SatI GCNGC 3 cut(s) 196, 336, 351
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 1 cut(s) 146
SetI ASST 7 cut(s) 12, 68, 101, 126, 317, 352, 456
SfaNI GCATC 1 cut(s) 482
SmiMI CAYNNNNRTG 2 cut(s) 289, 415
Sse9I AATT 6 cut(s) 48, 148, 212, 448, 543, 603
SsiI CCGC 1 cut(s) 295
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 2 cut(s) 74, 326
TaiI ACGT 2 cut(s) 101, 456
TasI AATT 6 cut(s) 48, 148, 212, 448, 543, 603
TatI WGTACW 1 cut(s) 431
TfiI GAWTC 3 cut(s) 134, 392, 587
Tru1I TTAA 1 cut(s) 619
Tru9I TTAA 1 cut(s) 619
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 2 cut(s) 408, 516
TseI GCWGC 3 cut(s) 195, 335, 350
Tsp45I GTSAC 2 cut(s) 408, 516
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 422
XapI RAATTY 1 cut(s) 603
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.