Prupe.7G191200_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
18288474 .. 18291491
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G191200.1

Sequence Viewer

Length: 981 bp
ATGAGAACAAGGAAACCTGAGATGGAGAAAACAGTGGCTCACTCTCAGTCTCAGCCTCAGTCCCAAATTGAGATCGTGAACATTGAAGACGACGATGCCTTTTGCTTCACACCCATTTCACTGAAGCGCTCGGCAGAGCACTTGGAAGAGGAAAGAGGCCTTCAATCGATCAAAGCAGGTAACTTTATCGACCTTTCTGATGAAACTCTAGACTTTTACGACGATGACGATGAGCTTAGAATTCTTAGGTTTAAACCCTCAAACACCCCCTTCGGAAAACGAACAAAACCCTTTACGGGTCCTTCTGTGACCGAAGCTGGGCAATCTTCCAATTCCAATGAAAACCCATCTTTTGTTTGTGAAATCTGTGTTGAAACCAAGCCCGGAAACCAGTTGTTTGGGGTAGAAAATTGCAGCCATGGTTATTGTACTGACTGTACGGTCAACTACGTGGCCTCGAAGCTTCAAGAGAACATCACAAACATTAGGTGCCCTGTTCCTGATTGTAAAGGATTGCTAGAGGCCGAGTATTGTCGACCAATTCTGCCCCCTGAGGTGTTTGATAGGTGGGGAAGTGTGTTGTGTGAGAGTGTGATTCTTGGGTCTGAGAAGTTCTATTGTCCCTATAAGGATTGCTCTGCTATGTTGATTGATGATGGGAAAGAGGTTATAAGGCAATCACAGTGCCTCAATTGTTGGAGAATGTTCTGTGCCCAGTGCAAAGTTCCTTGGCACGAGGAGATTGAGTGCGAAGAATTTCAGAAGTTGAATAAGGATGAGAGGGAAAAGGAAGCTGTCATGTTGAAGAACCTTGCGCAGCAGAAACAATGGAGAAGATGCCCCAATTGTAAGTTCTATGTGGAAAAATCGGAGGGTTGCATGTTCATGATGTGCAGGTGCAAAACAGCTTTCTGCTACAGATGCGGTAAAATTTTAAAAGCCAATCATGGCCACAATTGTCCCAATTGTAGGGGGCGTTGA

Protein Analysis

327

Amino Acids

37.47

Weight (kDa)

5.69

Isoelectric Point (pI)

62.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 671
AarI CACCTGC 1 cut(s) 885
AasI GACNNNNNNGTC 1 cut(s) 440
Acc16I TGCGCA 1 cut(s) 816
Acc36I ACCTGC 2 cut(s) 167, 885
AccB1I GGYRCC 1 cut(s) 489
AccI GTMKAC 1 cut(s) 535
AciI CCGC 1 cut(s) 924
AcoI YGGCCR 1 cut(s) 949
AcsI RAATTY 3 cut(s) 240, 755, 930
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 2 cut(s) 430, 439
AfeI AGCGCT 1 cut(s) 128
AfiI CCNNNNNNNGG 3 cut(s) 296, 318, 969
AgsI TTSAA 6 cut(s) 86, 164, 374, 467, 769, 805
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
AluBI AGCT 5 cut(s) 235, 317, 463, 794, 908
AluI AGCT 5 cut(s) 235, 317, 463, 794, 908
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 54
Aor51HI AGCGCT 1 cut(s) 128
AoxI GGCC 4 cut(s) 157, 453, 522, 949
ApeKI GCWGC 2 cut(s) 414, 817
ApoI RAATTY 3 cut(s) 240, 755, 930
Asp700I GAANNNNTTC 1 cut(s) 756
AspLEI GCGC 2 cut(s) 129, 817
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 384
AvaII GGWCC 1 cut(s) 299
AxyI CCTNAGG 1 cut(s) 552
BaeGI GKGCMC 2 cut(s) 494, 715
BalI TGGCCA 1 cut(s) 951
BanI GGYRCC 1 cut(s) 489
BauI CACGAG 1 cut(s) 734
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 426, 829
BccI CCATC 3 cut(s) 16, 355, 650
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 2 cut(s) 209, 518
BfmI CTRYAG 1 cut(s) 916
BfoI RGCGCY 1 cut(s) 130
BfuAI ACCTGC 2 cut(s) 167, 885
BisI GCNGC 2 cut(s) 415, 818
BlsI GCNGC 2 cut(s) 416, 819
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 300, 491
BmrFI CCNGG 1 cut(s) 384
BmrI ACTGGG 1 cut(s) 709
BmsI GCATC 3 cut(s) 85, 827, 911
BmuI ACTGGG 1 cut(s) 709
BpiI GAAGAC 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 384
Bsa29I ATCGAT 1 cut(s) 167
BsaAI YACGTR 1 cut(s) 451
BsaJI CCNNGG 2 cut(s) 418, 728
BsaXI ACNNNNNCTCC 2 cut(s) 731, 761
Bsc4I CCNNNNNNNGG 3 cut(s) 296, 318, 969
Bse1I ACTGG 2 cut(s) 391, 715
Bse21I CCTNAGG 1 cut(s) 552
BseCI ATCGAT 1 cut(s) 167
BseDI CCNNGG 2 cut(s) 418, 728
BseGI GGATG 1 cut(s) 781
BseLI CCNNNNNNNGG 3 cut(s) 296, 318, 969
BseMII CTCAG 6 cut(s) 9, 59, 65, 71, 543, 597
BseNI ACTGG 2 cut(s) 391, 715
BseRI GAGGAG 1 cut(s) 752
BseSI GKGCMC 2 cut(s) 494, 715
BseXI GCAGC 2 cut(s) 426, 829
BseYI CCCAGC 1 cut(s) 317
BsgI GTGCAG 1 cut(s) 913
BshFI GGCC 4 cut(s) 159, 455, 524, 951
BshNI GGYRCC 1 cut(s) 489
BshVI ATCGAT 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 384
BslFI GGGAC 3 cut(s) 46, 606, 945
BslI CCNNNNNNNGG 3 cut(s) 296, 318, 969
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 3 cut(s) 46, 606, 945
BsnI GGCC 4 cut(s) 159, 455, 524, 951
Bsp1286I GDGCHC 3 cut(s) 141, 494, 715
Bsp143I GATC 2 cut(s) 72, 168
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 1 cut(s) 924
BspANI GGCC 4 cut(s) 159, 455, 524, 951
BspCNI CTCAG 6 cut(s) 10, 58, 64, 70, 544, 598
BspDI ATCGAT 1 cut(s) 167
BspHI TCATGA 1 cut(s) 885
BspLI GGNNCC 2 cut(s) 300, 491
BspMI ACCTGC 2 cut(s) 167, 885
BspT107I GGYRCC 1 cut(s) 489
BsrI ACTGG 2 cut(s) 391, 715
BssECI CCNNGG 2 cut(s) 418, 728
BssMI GATC 2 cut(s) 72, 168
BssSI CACGAG 1 cut(s) 734
BssT1I CCWWGG 2 cut(s) 418, 728
Bst2BI CACGAG 1 cut(s) 734
Bst4CI ACNGT 4 cut(s) 34, 437, 442, 684
Bst6I CTCTTC 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 451
BstDEI CTNAG 8 cut(s) 18, 45, 51, 57, 236, 245, 552, 606
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 1 cut(s) 781
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 2 cut(s) 129, 817
BstKTI GATC 2 cut(s) 75, 171
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 2 cut(s) 72, 168
BstMWI GCNNNNNNNGC 1 cut(s) 921
BstNSI RCATGY 1 cut(s) 883
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 916
BstSLI GKGCMC 2 cut(s) 494, 715
BstV1I GCAGC 2 cut(s) 426, 829
BstV2I GAAGAC 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 398
Bsu15I ATCGAT 1 cut(s) 167
Bsu36I CCTNAGG 1 cut(s) 552
BsuRI GGCC 4 cut(s) 159, 455, 524, 951
BsuTUI ATCGAT 1 cut(s) 167
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 1 cut(s) 781
BtsIMutI CAGTG 4 cut(s) 39, 119, 689, 722
BveI ACCTGC 2 cut(s) 167, 885
CciI TCATGA 1 cut(s) 885
CfoI GCGC 2 cut(s) 129, 817
Cfr13I GGNCC 1 cut(s) 299
ClaI ATCGAT 1 cut(s) 167
Csp6I GTAC 2 cut(s) 429, 438
CviAII CATG 5 cut(s) 419, 799, 880, 886, 947
CviQI GTAC 2 cut(s) 429, 438
DdeI CTNAG 8 cut(s) 18, 45, 51, 57, 236, 245, 552, 606
DpnI GATC 2 cut(s) 74, 170
DpnII GATC 2 cut(s) 72, 168
DraI TTTAAA 2 cut(s) 253, 936
DrdI GACNNNNNNGTC 1 cut(s) 440
DseDI GACNNNNNNGTC 1 cut(s) 440
EaeI YGGCCR 1 cut(s) 949
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 418, 728
Eco147I AGGCCT 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 299
Eco47III AGCGCT 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 143
Eco81I CCTNAGG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 240
EcoT14I CCWWGG 2 cut(s) 418, 728
ErhI CCWWGG 2 cut(s) 418, 728
FaeI CATG 5 cut(s) 422, 802, 883, 889, 950
FaiI YATR 9 cut(s) 420, 627, 644, 671, 800, 858, 881, 887, 948
FaqI GGGAC 3 cut(s) 46, 606, 945
FatI CATG 5 cut(s) 418, 798, 879, 885, 946
FblI GTMKAC 1 cut(s) 535
Fnu4HI GCNGC 2 cut(s) 415, 818
FokI GGATG 1 cut(s) 788
Fsp4HI GCNGC 2 cut(s) 415, 818
FspBI CTAG 2 cut(s) 209, 518
FspI TGCGCA 1 cut(s) 816
GlaI GCGC 2 cut(s) 128, 816
GluI GCNGC 2 cut(s) 415, 818
GsaI CCCAGC 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 4 cut(s) 159, 455, 524, 951
HapII CCGG 1 cut(s) 384
HhaI GCGC 2 cut(s) 129, 817
Hin1II CATG 5 cut(s) 422, 802, 883, 889, 950
Hin6I GCGC 2 cut(s) 127, 815
HinP1I GCGC 2 cut(s) 127, 815
HincII GTYRAC 2 cut(s) 445, 536
HindII GTYRAC 2 cut(s) 445, 536
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 1 cut(s) 595
HpaII CCGG 1 cut(s) 384
Hpy166II GTNNAC 3 cut(s) 79, 445, 536
Hpy188I TCNGA 5 cut(s) 199, 275, 607, 762, 871
Hpy188III TCNNGA 5 cut(s) 76, 209, 467, 500, 886
Hpy8I GTNNAC 3 cut(s) 79, 445, 536
Hpy99I CGWCG 2 cut(s) 95, 224
HpyAV CCTTC 3 cut(s) 170, 280, 312
HpyCH4III ACNGT 4 cut(s) 34, 437, 442, 684
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 5 cut(s) 414, 720, 879, 894, 900
HpyF10VI GCNNNNNNNGC 1 cut(s) 921
HpyF3I CTNAG 8 cut(s) 18, 45, 51, 57, 236, 245, 552, 606
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 5 cut(s) 422, 802, 883, 889, 950
HspAI GCGC 2 cut(s) 127, 815
Kzo9I GATC 2 cut(s) 72, 168
Lsp1109I GCAGC 2 cut(s) 426, 829
LweI GCATC 3 cut(s) 85, 827, 911
MaeI CTAG 2 cut(s) 209, 518
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 2 cut(s) 179, 307
MalI GATC 2 cut(s) 74, 170
MboI GATC 2 cut(s) 72, 168
MboII GAAGA 6 cut(s) 98, 158, 318, 764, 817, 846
MfeI CAATTG 4 cut(s) 691, 844, 955, 964
MhlI GDGCHC 3 cut(s) 141, 494, 715
MlsI TGGCCA 1 cut(s) 951
MluNI TGGCCA 1 cut(s) 951
MmeI TCCRAC 1 cut(s) 677
Mox20I TGGCCA 1 cut(s) 951
MroXI GAANNNNTTC 1 cut(s) 756
MscI TGGCCA 1 cut(s) 951
MseI TTAA 2 cut(s) 252, 935
MslI CAYNNNNRTG 1 cut(s) 884
Msp20I TGGCCA 1 cut(s) 951
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 1 cut(s) 384
MssI GTTTAAAC 1 cut(s) 253
MunI CAATTG 4 cut(s) 691, 844, 955, 964
MwoI GCNNNNNNNGC 1 cut(s) 921
NciI CCSGG 1 cut(s) 384
NcoI CCATGG 1 cut(s) 418
NdeII GATC 2 cut(s) 72, 168
NlaIII CATG 5 cut(s) 422, 802, 883, 889, 950
NlaIV GGNNCC 2 cut(s) 300, 491
NmeAIII GCCGAG 2 cut(s) 110, 550
NmuCI GTSAC 1 cut(s) 307
NsbI TGCGCA 1 cut(s) 816
NspI RCATGY 1 cut(s) 883
PagI TCATGA 1 cut(s) 885
PaqCI CACCTGC 1 cut(s) 885
PceI AGGCCT 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 756
PfeI GAWTC 1 cut(s) 595
PkrI GCNGC 2 cut(s) 416, 819
PmeI GTTTAAAC 1 cut(s) 253
Ppu21I YACGTR 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 299
PsiI TTATAA 1 cut(s) 671
Psp5II RGGWCCY 1 cut(s) 299
PspFI CCCAGC 1 cut(s) 317
PspN4I GGNNCC 2 cut(s) 300, 491
PspPI GGNCC 1 cut(s) 299
PspPPI RGGWCCY 1 cut(s) 299
RsaI GTAC 2 cut(s) 430, 439
RsaNI GTAC 2 cut(s) 429, 438
RseI CAYNNNNRTG 1 cut(s) 884
SalI GTCGAC 1 cut(s) 534
SaqAI TTAA 2 cut(s) 252, 935
SatI GCNGC 2 cut(s) 415, 818
Sau3AI GATC 2 cut(s) 72, 168
Sau96I GGNCC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 3 cut(s) 141, 494, 715
SfaNI GCATC 3 cut(s) 85, 827, 911
SfcI CTRYAG 1 cut(s) 916
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 884
SseBI AGGCCT 1 cut(s) 159
SsiI CCGC 1 cut(s) 924
SspMI CTAG 2 cut(s) 209, 518
StuI AGGCCT 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 2 cut(s) 418, 728
TaaI ACNGT 4 cut(s) 34, 437, 442, 684
TaiI ACGT 1 cut(s) 453
TaqI TCGA 4 cut(s) 167, 189, 458, 535
TaqII GACCGA 1 cut(s) 326
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 1 cut(s) 595
Tru1I TTAA 2 cut(s) 252, 935
Tru9I TTAA 2 cut(s) 252, 935
TscAI CASTG 4 cut(s) 39, 126, 689, 722
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 414, 817
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 3 cut(s) 216, 354, 874
TspRI CASTG 4 cut(s) 39, 126, 689, 722
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 3 cut(s) 240, 755, 930
XbaI TCTAGA 1 cut(s) 208
XceI RCATGY 1 cut(s) 883
XmiI GTMKAC 1 cut(s) 535
XmnI GAANNNNTTC 1 cut(s) 756
XspI CTAG 2 cut(s) 209, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.