E3 ubiquitin-protein ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 671 |
| AarI | CACCTGC | 1 cut(s) | 885 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 440 |
| Acc16I | TGCGCA | 1 cut(s) | 816 |
| Acc36I | ACCTGC | 2 cut(s) | 167, 885 |
| AccB1I | GGYRCC | 1 cut(s) | 489 |
| AccI | GTMKAC | 1 cut(s) | 535 |
| AciI | CCGC | 1 cut(s) | 924 |
| AcoI | YGGCCR | 1 cut(s) | 949 |
| AcsI | RAATTY | 3 cut(s) | 240, 755, 930 |
| AcuI | CTGAAG | 1 cut(s) | 143 |
| AfaI | GTAC | 2 cut(s) | 430, 439 |
| AfeI | AGCGCT | 1 cut(s) | 128 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 296, 318, 969 |
| AgsI | TTSAA | 6 cut(s) | 86, 164, 374, 467, 769, 805 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 836, 868 |
| AluBI | AGCT | 5 cut(s) | 235, 317, 463, 794, 908 |
| AluI | AGCT | 5 cut(s) | 235, 317, 463, 794, 908 |
| Alw21I | GWGCWC | 1 cut(s) | 141 |
| Alw26I | GTCTC | 1 cut(s) | 54 |
| Aor51HI | AGCGCT | 1 cut(s) | 128 |
| AoxI | GGCC | 4 cut(s) | 157, 453, 522, 949 |
| ApeKI | GCWGC | 2 cut(s) | 414, 817 |
| ApoI | RAATTY | 3 cut(s) | 240, 755, 930 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 756 |
| AspLEI | GCGC | 2 cut(s) | 129, 817 |
| AspS9I | GGNCC | 1 cut(s) | 299 |
| AsuC2I | CCSGG | 1 cut(s) | 384 |
| AvaII | GGWCC | 1 cut(s) | 299 |
| AxyI | CCTNAGG | 1 cut(s) | 552 |
| BaeGI | GKGCMC | 2 cut(s) | 494, 715 |
| BalI | TGGCCA | 1 cut(s) | 951 |
| BanI | GGYRCC | 1 cut(s) | 489 |
| BauI | CACGAG | 1 cut(s) | 734 |
| BbsI | GAAGAC | 1 cut(s) | 93 |
| Bbv12I | GWGCWC | 1 cut(s) | 141 |
| BbvI | GCAGC | 2 cut(s) | 426, 829 |
| BccI | CCATC | 3 cut(s) | 16, 355, 650 |
| BcnI | CCSGG | 1 cut(s) | 384 |
| BcoDI | GTCTC | 1 cut(s) | 54 |
| BfaI | CTAG | 2 cut(s) | 209, 518 |
| BfmI | CTRYAG | 1 cut(s) | 916 |
| BfoI | RGCGCY | 1 cut(s) | 130 |
| BfuAI | ACCTGC | 2 cut(s) | 167, 885 |
| BisI | GCNGC | 2 cut(s) | 415, 818 |
| BlsI | GCNGC | 2 cut(s) | 416, 819 |
| Bme1390I | CCNGG | 1 cut(s) | 384 |
| Bme18I | GGWCC | 1 cut(s) | 299 |
| BmgT120I | GGNCC | 1 cut(s) | 299 |
| BmiI | GGNNCC | 2 cut(s) | 300, 491 |
| BmrFI | CCNGG | 1 cut(s) | 384 |
| BmrI | ACTGGG | 1 cut(s) | 709 |
| BmsI | GCATC | 3 cut(s) | 85, 827, 911 |
| BmuI | ACTGGG | 1 cut(s) | 709 |
| BpiI | GAAGAC | 1 cut(s) | 93 |
| BpuMI | CCSGG | 1 cut(s) | 384 |
| Bsa29I | ATCGAT | 1 cut(s) | 167 |
| BsaAI | YACGTR | 1 cut(s) | 451 |
| BsaJI | CCNNGG | 2 cut(s) | 418, 728 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 731, 761 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 296, 318, 969 |
| Bse1I | ACTGG | 2 cut(s) | 391, 715 |
| Bse21I | CCTNAGG | 1 cut(s) | 552 |
| BseCI | ATCGAT | 1 cut(s) | 167 |
| BseDI | CCNNGG | 2 cut(s) | 418, 728 |
| BseGI | GGATG | 1 cut(s) | 781 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 296, 318, 969 |
| BseMII | CTCAG | 6 cut(s) | 9, 59, 65, 71, 543, 597 |
| BseNI | ACTGG | 2 cut(s) | 391, 715 |
| BseRI | GAGGAG | 1 cut(s) | 752 |
| BseSI | GKGCMC | 2 cut(s) | 494, 715 |
| BseXI | GCAGC | 2 cut(s) | 426, 829 |
| BseYI | CCCAGC | 1 cut(s) | 317 |
| BsgI | GTGCAG | 1 cut(s) | 913 |
| BshFI | GGCC | 4 cut(s) | 159, 455, 524, 951 |
| BshNI | GGYRCC | 1 cut(s) | 489 |
| BshVI | ATCGAT | 1 cut(s) | 167 |
| BsiHKAI | GWGCWC | 1 cut(s) | 141 |
| BsiSI | CCGG | 1 cut(s) | 384 |
| BslFI | GGGAC | 3 cut(s) | 46, 606, 945 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 296, 318, 969 |
| BsmAI | GTCTC | 1 cut(s) | 54 |
| BsmFI | GGGAC | 3 cut(s) | 46, 606, 945 |
| BsnI | GGCC | 4 cut(s) | 159, 455, 524, 951 |
| Bsp1286I | GDGCHC | 3 cut(s) | 141, 494, 715 |
| Bsp143I | GATC | 2 cut(s) | 72, 168 |
| Bsp19I | CCATGG | 1 cut(s) | 418 |
| BspACI | CCGC | 1 cut(s) | 924 |
| BspANI | GGCC | 4 cut(s) | 159, 455, 524, 951 |
| BspCNI | CTCAG | 6 cut(s) | 10, 58, 64, 70, 544, 598 |
| BspDI | ATCGAT | 1 cut(s) | 167 |
| BspHI | TCATGA | 1 cut(s) | 885 |
| BspLI | GGNNCC | 2 cut(s) | 300, 491 |
| BspMI | ACCTGC | 2 cut(s) | 167, 885 |
| BspT107I | GGYRCC | 1 cut(s) | 489 |
| BsrI | ACTGG | 2 cut(s) | 391, 715 |
| BssECI | CCNNGG | 2 cut(s) | 418, 728 |
| BssMI | GATC | 2 cut(s) | 72, 168 |
| BssSI | CACGAG | 1 cut(s) | 734 |
| BssT1I | CCWWGG | 2 cut(s) | 418, 728 |
| Bst2BI | CACGAG | 1 cut(s) | 734 |
| Bst4CI | ACNGT | 4 cut(s) | 34, 437, 442, 684 |
| Bst6I | CTCTTC | 1 cut(s) | 141 |
| BstBAI | YACGTR | 1 cut(s) | 451 |
| BstDEI | CTNAG | 8 cut(s) | 18, 45, 51, 57, 236, 245, 552, 606 |
| BstDSI | CCRYGG | 1 cut(s) | 418 |
| BstF5I | GGATG | 1 cut(s) | 781 |
| BstH2I | RGCGCY | 1 cut(s) | 130 |
| BstHHI | GCGC | 2 cut(s) | 129, 817 |
| BstKTI | GATC | 2 cut(s) | 75, 171 |
| BstMAI | GTCTC | 1 cut(s) | 54 |
| BstMBI | GATC | 2 cut(s) | 72, 168 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 921 |
| BstNSI | RCATGY | 1 cut(s) | 883 |
| BstSCI | CCNGG | 1 cut(s) | 382 |
| BstSFI | CTRYAG | 1 cut(s) | 916 |
| BstSLI | GKGCMC | 2 cut(s) | 494, 715 |
| BstV1I | GCAGC | 2 cut(s) | 426, 829 |
| BstV2I | GAAGAC | 1 cut(s) | 93 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 398 |
| Bsu15I | ATCGAT | 1 cut(s) | 167 |
| Bsu36I | CCTNAGG | 1 cut(s) | 552 |
| BsuRI | GGCC | 4 cut(s) | 159, 455, 524, 951 |
| BsuTUI | ATCGAT | 1 cut(s) | 167 |
| BtgI | CCRYGG | 1 cut(s) | 418 |
| BtsCI | GGATG | 1 cut(s) | 781 |
| BtsIMutI | CAGTG | 4 cut(s) | 39, 119, 689, 722 |
| BveI | ACCTGC | 2 cut(s) | 167, 885 |
| CciI | TCATGA | 1 cut(s) | 885 |
| CfoI | GCGC | 2 cut(s) | 129, 817 |
| Cfr13I | GGNCC | 1 cut(s) | 299 |
| ClaI | ATCGAT | 1 cut(s) | 167 |
| Csp6I | GTAC | 2 cut(s) | 429, 438 |
| CviAII | CATG | 5 cut(s) | 419, 799, 880, 886, 947 |
| CviQI | GTAC | 2 cut(s) | 429, 438 |
| DdeI | CTNAG | 8 cut(s) | 18, 45, 51, 57, 236, 245, 552, 606 |
| DpnI | GATC | 2 cut(s) | 74, 170 |
| DpnII | GATC | 2 cut(s) | 72, 168 |
| DraI | TTTAAA | 2 cut(s) | 253, 936 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 440 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 440 |
| EaeI | YGGCCR | 1 cut(s) | 949 |
| Eam1104I | CTCTTC | 1 cut(s) | 141 |
| EarI | CTCTTC | 1 cut(s) | 141 |
| Eco130I | CCWWGG | 2 cut(s) | 418, 728 |
| Eco147I | AGGCCT | 1 cut(s) | 159 |
| Eco47I | GGWCC | 1 cut(s) | 299 |
| Eco47III | AGCGCT | 1 cut(s) | 128 |
| Eco57I | CTGAAG | 1 cut(s) | 143 |
| Eco81I | CCTNAGG | 1 cut(s) | 552 |
| EcoO109I | RGGNCCY | 1 cut(s) | 299 |
| EcoRI | GAATTC | 1 cut(s) | 240 |
| EcoT14I | CCWWGG | 2 cut(s) | 418, 728 |
| ErhI | CCWWGG | 2 cut(s) | 418, 728 |
| FaeI | CATG | 5 cut(s) | 422, 802, 883, 889, 950 |
| FaiI | YATR | 9 cut(s) | 420, 627, 644, 671, 800, 858, 881, 887, 948 |
| FaqI | GGGAC | 3 cut(s) | 46, 606, 945 |
| FatI | CATG | 5 cut(s) | 418, 798, 879, 885, 946 |
| FblI | GTMKAC | 1 cut(s) | 535 |
| Fnu4HI | GCNGC | 2 cut(s) | 415, 818 |
| FokI | GGATG | 1 cut(s) | 788 |
| Fsp4HI | GCNGC | 2 cut(s) | 415, 818 |
| FspBI | CTAG | 2 cut(s) | 209, 518 |
| FspI | TGCGCA | 1 cut(s) | 816 |
| GlaI | GCGC | 2 cut(s) | 128, 816 |
| GluI | GCNGC | 2 cut(s) | 415, 818 |
| GsaI | CCCAGC | 1 cut(s) | 321 |
| HaeII | RGCGCY | 1 cut(s) | 130 |
| HaeIII | GGCC | 4 cut(s) | 159, 455, 524, 951 |
| HapII | CCGG | 1 cut(s) | 384 |
| HhaI | GCGC | 2 cut(s) | 129, 817 |
| Hin1II | CATG | 5 cut(s) | 422, 802, 883, 889, 950 |
| Hin6I | GCGC | 2 cut(s) | 127, 815 |
| HinP1I | GCGC | 2 cut(s) | 127, 815 |
| HincII | GTYRAC | 2 cut(s) | 445, 536 |
| HindII | GTYRAC | 2 cut(s) | 445, 536 |
| HindIII | AAGCTT | 1 cut(s) | 461 |
| HinfI | GANTC | 1 cut(s) | 595 |
| HpaII | CCGG | 1 cut(s) | 384 |
| Hpy166II | GTNNAC | 3 cut(s) | 79, 445, 536 |
| Hpy188I | TCNGA | 5 cut(s) | 199, 275, 607, 762, 871 |
| Hpy188III | TCNNGA | 5 cut(s) | 76, 209, 467, 500, 886 |
| Hpy8I | GTNNAC | 3 cut(s) | 79, 445, 536 |
| Hpy99I | CGWCG | 2 cut(s) | 95, 224 |
| HpyAV | CCTTC | 3 cut(s) | 170, 280, 312 |
| HpyCH4III | ACNGT | 4 cut(s) | 34, 437, 442, 684 |
| HpyCH4IV | ACGT | 1 cut(s) | 450 |
| HpyCH4V | TGCA | 5 cut(s) | 414, 720, 879, 894, 900 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 921 |
| HpyF3I | CTNAG | 8 cut(s) | 18, 45, 51, 57, 236, 245, 552, 606 |
| HpySE526I | ACGT | 1 cut(s) | 450 |
| Hsp92II | CATG | 5 cut(s) | 422, 802, 883, 889, 950 |
| HspAI | GCGC | 2 cut(s) | 127, 815 |
| Kzo9I | GATC | 2 cut(s) | 72, 168 |
| Lsp1109I | GCAGC | 2 cut(s) | 426, 829 |
| LweI | GCATC | 3 cut(s) | 85, 827, 911 |
| MaeI | CTAG | 2 cut(s) | 209, 518 |
| MaeII | ACGT | 1 cut(s) | 450 |
| MaeIII | GTNAC | 2 cut(s) | 179, 307 |
| MalI | GATC | 2 cut(s) | 74, 170 |
| MboI | GATC | 2 cut(s) | 72, 168 |
| MboII | GAAGA | 6 cut(s) | 98, 158, 318, 764, 817, 846 |
| MfeI | CAATTG | 4 cut(s) | 691, 844, 955, 964 |
| MhlI | GDGCHC | 3 cut(s) | 141, 494, 715 |
| MlsI | TGGCCA | 1 cut(s) | 951 |
| MluNI | TGGCCA | 1 cut(s) | 951 |
| MmeI | TCCRAC | 1 cut(s) | 677 |
| Mox20I | TGGCCA | 1 cut(s) | 951 |
| MroXI | GAANNNNTTC | 1 cut(s) | 756 |
| MscI | TGGCCA | 1 cut(s) | 951 |
| MseI | TTAA | 2 cut(s) | 252, 935 |
| MslI | CAYNNNNRTG | 1 cut(s) | 884 |
| Msp20I | TGGCCA | 1 cut(s) | 951 |
| MspI | CCGG | 1 cut(s) | 384 |
| MspR9I | CCNGG | 1 cut(s) | 384 |
| MssI | GTTTAAAC | 1 cut(s) | 253 |
| MunI | CAATTG | 4 cut(s) | 691, 844, 955, 964 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 921 |
| NciI | CCSGG | 1 cut(s) | 384 |
| NcoI | CCATGG | 1 cut(s) | 418 |
| NdeII | GATC | 2 cut(s) | 72, 168 |
| NlaIII | CATG | 5 cut(s) | 422, 802, 883, 889, 950 |
| NlaIV | GGNNCC | 2 cut(s) | 300, 491 |
| NmeAIII | GCCGAG | 2 cut(s) | 110, 550 |
| NmuCI | GTSAC | 1 cut(s) | 307 |
| NsbI | TGCGCA | 1 cut(s) | 816 |
| NspI | RCATGY | 1 cut(s) | 883 |
| PagI | TCATGA | 1 cut(s) | 885 |
| PaqCI | CACCTGC | 1 cut(s) | 885 |
| PceI | AGGCCT | 1 cut(s) | 159 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 225 |
| PdmI | GAANNNNTTC | 1 cut(s) | 756 |
| PfeI | GAWTC | 1 cut(s) | 595 |
| PkrI | GCNGC | 2 cut(s) | 416, 819 |
| PmeI | GTTTAAAC | 1 cut(s) | 253 |
| Ppu21I | YACGTR | 1 cut(s) | 451 |
| PpuMI | RGGWCCY | 1 cut(s) | 299 |
| PsiI | TTATAA | 1 cut(s) | 671 |
| Psp5II | RGGWCCY | 1 cut(s) | 299 |
| PspFI | CCCAGC | 1 cut(s) | 317 |
| PspN4I | GGNNCC | 2 cut(s) | 300, 491 |
| PspPI | GGNCC | 1 cut(s) | 299 |
| PspPPI | RGGWCCY | 1 cut(s) | 299 |
| RsaI | GTAC | 2 cut(s) | 430, 439 |
| RsaNI | GTAC | 2 cut(s) | 429, 438 |
| RseI | CAYNNNNRTG | 1 cut(s) | 884 |
| SalI | GTCGAC | 1 cut(s) | 534 |
| SaqAI | TTAA | 2 cut(s) | 252, 935 |
| SatI | GCNGC | 2 cut(s) | 415, 818 |
| Sau3AI | GATC | 2 cut(s) | 72, 168 |
| Sau96I | GGNCC | 1 cut(s) | 299 |
| ScrFI | CCNGG | 1 cut(s) | 384 |
| SduI | GDGCHC | 3 cut(s) | 141, 494, 715 |
| SfaNI | GCATC | 3 cut(s) | 85, 827, 911 |
| SfcI | CTRYAG | 1 cut(s) | 916 |
| SinI | GGWCC | 1 cut(s) | 299 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 884 |
| SseBI | AGGCCT | 1 cut(s) | 159 |
| SsiI | CCGC | 1 cut(s) | 924 |
| SspMI | CTAG | 2 cut(s) | 209, 518 |
| StuI | AGGCCT | 1 cut(s) | 159 |
| StyD4I | CCNGG | 1 cut(s) | 382 |
| StyI | CCWWGG | 2 cut(s) | 418, 728 |
| TaaI | ACNGT | 4 cut(s) | 34, 437, 442, 684 |
| TaiI | ACGT | 1 cut(s) | 453 |
| TaqI | TCGA | 4 cut(s) | 167, 189, 458, 535 |
| TaqII | GACCGA | 1 cut(s) | 326 |
| TatI | WGTACW | 1 cut(s) | 428 |
| TfiI | GAWTC | 1 cut(s) | 595 |
| Tru1I | TTAA | 2 cut(s) | 252, 935 |
| Tru9I | TTAA | 2 cut(s) | 252, 935 |
| TscAI | CASTG | 4 cut(s) | 39, 126, 689, 722 |
| TseFI | GTSAC | 1 cut(s) | 307 |
| TseI | GCWGC | 2 cut(s) | 414, 817 |
| Tsp45I | GTSAC | 1 cut(s) | 307 |
| TspDTI | ATGAA | 3 cut(s) | 216, 354, 874 |
| TspRI | CASTG | 4 cut(s) | 39, 126, 689, 722 |
| VpaK11BI | GGWCC | 1 cut(s) | 299 |
| XapI | RAATTY | 3 cut(s) | 240, 755, 930 |
| XbaI | TCTAGA | 1 cut(s) | 208 |
| XceI | RCATGY | 1 cut(s) | 883 |
| XmiI | GTMKAC | 1 cut(s) | 535 |
| XmnI | GAANNNNTTC | 1 cut(s) | 756 |
| XspI | CTAG | 2 cut(s) | 209, 518 |