Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8160592.1

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 363

Gene Structure 362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8160592.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 362 bp

atgagaagcaagaaagcgaagaaacccaaactggaggagaaagtgtctcaatcgcacaatgagattgtgaacattgaagacgatgagctttgcttcacaccaaaacgctctagcaagttcaattctatctcagtcgatgagaacagaaaccttcaatcaatcaaggaatctattaaggcctctcttctaaagtccacaggtaatttcatcgacctttctgatgaaactcattcggaagatgacgaagagcttatagttcttaggtttcaacccccaaacacgacattcggaaagcgaaaggaaccctttagtagtccttctgtaaccgaagttggggaatcttctaattccaattccaaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

120

Amino Acids

13.55

Weight (kDa)

5.76

Isoelectric Point (pI)

66.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	4 cut(s)	77, 121, 155, 269
AluBI	AGCT	2 cut(s)	88, 250
AluI	AGCT	2 cut(s)	88, 250
Alw26I	GTCTC	1 cut(s)	51
AoxI	GGCC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	303
BspQI	GCTCTTC	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	36
Bst6I	CTCTTC	2 cut(s)	189, 240
BstDEI	CTNAG	2 cut(s)	130, 260
BstMAI	GTCTC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	179
CviJI	RGCY	3 cut(s)	88, 179, 250
CviKI_1	RGCY	3 cut(s)	88, 179, 250
DdeI	CTNAG	2 cut(s)	130, 260
Eam1104I	CTCTTC	2 cut(s)	189, 240
EarI	CTCTTC	2 cut(s)	189, 240
Eco147I	AGGCCT	1 cut(s)	179
FaiI	YATR	1 cut(s)	254
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FspBI	CTAG	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	179
HinfI	GANTC	2 cut(s)	167, 338
Hpy166II	GTNNAC	2 cut(s)	70, 195
Hpy188I	TCNGA	3 cut(s)	220, 235, 290
Hpy8I	GTNNAC	2 cut(s)	70, 195
HpyAV	CCTTC	2 cut(s)	161, 327
HpyF3I	CTNAG	2 cut(s)	130, 260
LguI	GCTCTTC	1 cut(s)	240
LpnPI	CCDG	2 cut(s)	17, 183
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	322
MboII	GAAGA	6 cut(s)	31, 89, 176, 248, 257, 333
MluCI	AATT	4 cut(s)	121, 202, 346, 352
MnlI	CCTC	2 cut(s)	28, 190
MseI	TTAA	1 cut(s)	174
NlaIV	GGNNCC	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	167, 338
PspN4I	GGNNCC	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	174
SetI	ASST	6 cut(s)	90, 153, 202, 216, 252, 266
SgeI	CNNG	7 cut(s)	22, 44, 123, 127, 175, 210, 292
Sse9I	AATT	4 cut(s)	121, 202, 346, 352
SseBI	AGGCCT	1 cut(s)	179
SspMI	CTAG	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	179
TaqI	TCGA	2 cut(s)	135, 210
TasI	AATT	4 cut(s)	121, 202, 346, 352
TfiI	GAWTC	2 cut(s)	167, 338
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TspDTI	ATGAA	2 cut(s)	196, 237
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.