E3 ubiquitin-protein ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| IBR | PF01485 | 270 - 326 | 1.5e-09 | IBR domain, a half RING-finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1113 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1164 |
| Acc16I | TGCGCA | 3 cut(s) | 112, 262, 942 |
| Acc36I | ACCTGC | 2 cut(s) | 407, 1113 |
| AccB1I | GGYRCC | 1 cut(s) | 717 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1076 |
| AciI | CCGC | 8 cut(s) | 154, 277, 396, 408, 867, 994, 1128, 1249 |
| AclWI | GGATC | 4 cut(s) | 300, 743, 1088, 1302 |
| AcsI | RAATTY | 3 cut(s) | 55, 591, 839 |
| AfaI | GTAC | 4 cut(s) | 125, 658, 726, 1235 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 856, 1076, 1175 |
| AflIII | ACRYGT | 1 cut(s) | 1073 |
| AgsI | TTSAA | 6 cut(s) | 55, 182, 493, 791, 1141, 1228 |
| AjnI | CCWGG | 1 cut(s) | 965 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 494, 526 |
| AluBI | AGCT | 4 cut(s) | 185, 335, 691, 1277 |
| AluI | AGCT | 4 cut(s) | 185, 335, 691, 1277 |
| Alw21I | GWGCWC | 2 cut(s) | 18, 337 |
| Alw26I | GTCTC | 6 cut(s) | 200, 273, 276, 596, 837, 1320 |
| AlwI | GGATC | 4 cut(s) | 300, 743, 1088, 1302 |
| Ama87I | CYCGRG | 1 cut(s) | 400 |
| AoxI | GGCC | 1 cut(s) | 887 |
| ApeKI | GCWGC | 1 cut(s) | 1104 |
| ApoI | RAATTY | 3 cut(s) | 55, 591, 839 |
| AspLEI | GCGC | 3 cut(s) | 113, 263, 943 |
| AspS9I | GGNCC | 2 cut(s) | 887, 1252 |
| AsuC2I | CCSGG | 2 cut(s) | 1256, 1373 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 1016 |
| AvaI | CYCGRG | 1 cut(s) | 400 |
| AvaII | GGWCC | 1 cut(s) | 1252 |
| BaeGI | GKGCMC | 4 cut(s) | 101, 251, 917, 1070 |
| BanI | GGYRCC | 1 cut(s) | 717 |
| BanII | GRGCYC | 1 cut(s) | 337 |
| Bbv12I | GWGCWC | 2 cut(s) | 18, 337 |
| BbvI | GCAGC | 1 cut(s) | 1091 |
| BccI | CCATC | 4 cut(s) | 4, 185, 583, 878 |
| BceAI | ACGGC | 1 cut(s) | 303 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 419, 453, 603, 637, 1107, 1141 |
| BciT130I | CCWGG | 1 cut(s) | 967 |
| BcnI | CCSGG | 2 cut(s) | 1256, 1373 |
| BcoDI | GTCTC | 6 cut(s) | 200, 273, 276, 596, 837, 1320 |
| BfuAI | ACCTGC | 2 cut(s) | 407, 1113 |
| BisI | GCNGC | 1 cut(s) | 1105 |
| BlsI | GCNGC | 1 cut(s) | 1106 |
| Bme1390I | CCNGG | 3 cut(s) | 967, 1256, 1373 |
| Bme18I | GGWCC | 1 cut(s) | 1252 |
| BmeT110I | CYCGRG | 1 cut(s) | 400 |
| BmgT120I | GGNCC | 2 cut(s) | 887, 1252 |
| BmiI | GGNNCC | 4 cut(s) | 719, 954, 1253, 1263 |
| BmrFI | CCNGG | 3 cut(s) | 967, 1256, 1373 |
| BmrI | ACTGGG | 1 cut(s) | 1169 |
| BmsI | GCATC | 3 cut(s) | 10, 155, 1109 |
| BmuI | ACTGGG | 1 cut(s) | 1169 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 848, 880 |
| BpmI | CTGGAG | 1 cut(s) | 1078 |
| BpuMI | CCSGG | 2 cut(s) | 1256, 1373 |
| Bsa29I | ATCGAT | 1 cut(s) | 429 |
| BsaAI | YACGTR | 1 cut(s) | 679 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1364 |
| BsaI | GGTCTC | 3 cut(s) | 200, 596, 837 |
| BsaJI | CCNNGG | 2 cut(s) | 956, 1255 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 856, 1076, 1175 |
| Bse118I | RCCGGY | 1 cut(s) | 610 |
| Bse1I | ACTGG | 3 cut(s) | 121, 1061, 1164 |
| Bse3DI | GCAATG | 2 cut(s) | 270, 876 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1364 |
| BseBI | CCWGG | 1 cut(s) | 967 |
| BseCI | ATCGAT | 1 cut(s) | 429 |
| BseDI | CCNNGG | 2 cut(s) | 956, 1255 |
| BseGI | GGATG | 1 cut(s) | 1024 |
| BseJI | GATNNNNATC | 1 cut(s) | 1364 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 856, 1076, 1175 |
| BseMI | GCAATG | 2 cut(s) | 270, 876 |
| BseMII | CTCAG | 3 cut(s) | 211, 379, 848 |
| BseNI | ACTGG | 3 cut(s) | 121, 1061, 1164 |
| BseSI | GKGCMC | 4 cut(s) | 101, 251, 917, 1070 |
| BseXI | GCAGC | 1 cut(s) | 1091 |
| BsgI | GTGCAG | 1 cut(s) | 1090 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1382 |
| BshFI | GGCC | 1 cut(s) | 889 |
| BshNI | GGYRCC | 1 cut(s) | 717 |
| BshVI | ATCGAT | 1 cut(s) | 429 |
| BsiEI | CGRYCG | 1 cut(s) | 1382 |
| BsiHKAI | GWGCWC | 2 cut(s) | 18, 337 |
| BsiHKCI | CYCGRG | 1 cut(s) | 400 |
| BsiSI | CCGG | 4 cut(s) | 169, 611, 1255, 1372 |
| BslFI | GGGAC | 4 cut(s) | 390, 814, 1144, 1265 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 856, 1076, 1175 |
| BsmAI | GTCTC | 6 cut(s) | 200, 273, 276, 596, 837, 1320 |
| BsmFI | GGGAC | 4 cut(s) | 390, 814, 1144, 1265 |
| BsnI | GGCC | 1 cut(s) | 889 |
| Bso31I | GGTCTC | 3 cut(s) | 200, 596, 837 |
| BsoBI | CYCGRG | 1 cut(s) | 400 |
| Bsp1286I | GDGCHC | 6 cut(s) | 18, 101, 251, 337, 917, 1070 |
| BspACI | CCGC | 8 cut(s) | 154, 277, 396, 408, 867, 994, 1128, 1249 |
| BspANI | GGCC | 1 cut(s) | 889 |
| BspCNI | CTCAG | 3 cut(s) | 210, 378, 847 |
| BspDI | ATCGAT | 1 cut(s) | 429 |
| BspHI | TCATGA | 2 cut(s) | 187, 337 |
| BspLI | GGNNCC | 4 cut(s) | 719, 954, 1253, 1263 |
| BspMI | ACCTGC | 2 cut(s) | 407, 1113 |
| BspPI | GGATC | 4 cut(s) | 300, 743, 1088, 1302 |
| BspT107I | GGYRCC | 1 cut(s) | 717 |
| BspTNI | GGTCTC | 3 cut(s) | 200, 596, 837 |
| BsrDI | GCAATG | 2 cut(s) | 270, 876 |
| BsrFI | RCCGGY | 1 cut(s) | 610 |
| BsrI | ACTGG | 3 cut(s) | 121, 1061, 1164 |
| BssAI | RCCGGY | 1 cut(s) | 610 |
| BssECI | CCNNGG | 2 cut(s) | 956, 1255 |
| BssT1I | CCWWGG | 1 cut(s) | 956 |
| Bst2UI | CCWGG | 1 cut(s) | 967 |
| Bst4CI | ACNGT | 1 cut(s) | 246 |
| Bst6I | CTCTTC | 1 cut(s) | 465 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 717 |
| BstBAI | YACGTR | 1 cut(s) | 679 |
| BstC8I | GCNNGC | 4 cut(s) | 524, 612, 709, 963 |
| BstDEI | CTNAG | 4 cut(s) | 197, 365, 485, 834 |
| BstF5I | GGATG | 1 cut(s) | 1024 |
| BstHHI | GCGC | 3 cut(s) | 113, 263, 943 |
| BstMAI | GTCTC | 6 cut(s) | 200, 273, 276, 596, 837, 1320 |
| BstMCI | CGRYCG | 1 cut(s) | 1382 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 182, 717, 1289 |
| BstNI | CCWGG | 1 cut(s) | 967 |
| BstSCI | CCNGG | 3 cut(s) | 965, 1254, 1371 |
| BstSLI | GKGCMC | 4 cut(s) | 101, 251, 917, 1070 |
| BstV1I | GCAGC | 1 cut(s) | 1091 |
| BstX2I | RGATCY | 2 cut(s) | 1080, 1307 |
| BstYI | RGATCY | 2 cut(s) | 1080, 1307 |
| Bsu15I | ATCGAT | 1 cut(s) | 429 |
| BsuRI | GGCC | 1 cut(s) | 889 |
| BsuTUI | ATCGAT | 1 cut(s) | 429 |
| BtsCI | GGATG | 1 cut(s) | 1024 |
| BtsI | GCAGTG | 1 cut(s) | 950 |
| BtsIMutI | CAGTG | 3 cut(s) | 251, 950, 1054 |
| BveI | ACCTGC | 2 cut(s) | 407, 1113 |
| Cac8I | GCNNGC | 4 cut(s) | 524, 612, 709, 963 |
| CciI | TCATGA | 2 cut(s) | 187, 337 |
| CfoI | GCGC | 3 cut(s) | 113, 263, 943 |
| Cfr10I | RCCGGY | 1 cut(s) | 610 |
| Cfr13I | GGNCC | 2 cut(s) | 887, 1252 |
| ClaI | ATCGAT | 1 cut(s) | 429 |
| Csp6I | GTAC | 4 cut(s) | 124, 657, 725, 1234 |
| CviAII | CATG | 5 cut(s) | 130, 188, 338, 647, 1312 |
| CviQI | GTAC | 4 cut(s) | 124, 657, 725, 1234 |
| DdeI | CTNAG | 4 cut(s) | 197, 365, 485, 834 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1164 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1164 |
| Eam1104I | CTCTTC | 1 cut(s) | 465 |
| EarI | CTCTTC | 1 cut(s) | 465 |
| EciI | GGCGGA | 2 cut(s) | 385, 1009 |
| Ecl136II | GAGCTC | 1 cut(s) | 335 |
| Eco130I | CCWWGG | 1 cut(s) | 956 |
| Eco24I | GRGCYC | 1 cut(s) | 337 |
| Eco31I | GGTCTC | 3 cut(s) | 200, 596, 837 |
| Eco47I | GGWCC | 1 cut(s) | 1252 |
| Eco53kI | GAGCTC | 1 cut(s) | 335 |
| Eco88I | CYCGRG | 1 cut(s) | 400 |
| EcoICRI | GAGCTC | 1 cut(s) | 335 |
| EcoRI | GAATTC | 1 cut(s) | 55 |
| EcoRII | CCWGG | 1 cut(s) | 965 |
| EcoT14I | CCWWGG | 1 cut(s) | 956 |
| EcoT38I | GRGCYC | 1 cut(s) | 337 |
| ErhI | CCWWGG | 1 cut(s) | 956 |
| FaeI | CATG | 5 cut(s) | 133, 191, 341, 650, 1315 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 729, 761 |
| FaqI | GGGAC | 4 cut(s) | 390, 814, 1144, 1265 |
| FatI | CATG | 5 cut(s) | 129, 187, 337, 646, 1311 |
| FauI | CCCGC | 3 cut(s) | 415, 1121, 1242 |
| FauNDI | CATATG | 1 cut(s) | 1336 |
| Fnu4HI | GCNGC | 1 cut(s) | 1105 |
| FokI | GGATG | 1 cut(s) | 1031 |
| FriOI | GRGCYC | 1 cut(s) | 337 |
| Fsp4HI | GCNGC | 1 cut(s) | 1105 |
| FspI | TGCGCA | 3 cut(s) | 112, 262, 942 |
| GlaI | GCGC | 3 cut(s) | 112, 262, 942 |
| GluI | GCNGC | 1 cut(s) | 1105 |
| GsuI | CTGGAG | 1 cut(s) | 1078 |
| HaeIII | GGCC | 1 cut(s) | 889 |
| HapII | CCGG | 4 cut(s) | 169, 611, 1255, 1372 |
| HhaI | GCGC | 3 cut(s) | 113, 263, 943 |
| Hin1II | CATG | 5 cut(s) | 133, 191, 341, 650, 1315 |
| Hin6I | GCGC | 3 cut(s) | 111, 261, 941 |
| HinP1I | GCGC | 3 cut(s) | 111, 261, 941 |
| HincII | GTYRAC | 1 cut(s) | 323 |
| HindII | GTYRAC | 1 cut(s) | 323 |
| HpaII | CCGG | 4 cut(s) | 169, 611, 1255, 1372 |
| HphI | GGTGA | 2 cut(s) | 16, 1016 |
| Hpy166II | GTNNAC | 3 cut(s) | 323, 682, 1154 |
| Hpy188I | TCNGA | 7 cut(s) | 61, 70, 141, 312, 837, 910, 1324 |
| Hpy8I | GTNNAC | 3 cut(s) | 323, 682, 1154 |
| Hpy99I | CGWCG | 1 cut(s) | 884 |
| HpyAV | CCTTC | 5 cut(s) | 39, 539, 1222, 1233, 1394 |
| HpyCH4III | ACNGT | 1 cut(s) | 246 |
| HpyCH4IV | ACGT | 2 cut(s) | 678, 1073 |
| HpyCH4V | TGCA | 4 cut(s) | 642, 735, 1107, 1122 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 182, 717, 1289 |
| HpyF3I | CTNAG | 4 cut(s) | 197, 365, 485, 834 |
| HpySE526I | ACGT | 2 cut(s) | 678, 1073 |
| Hsp92II | CATG | 5 cut(s) | 133, 191, 341, 650, 1315 |
| HspAI | GCGC | 3 cut(s) | 111, 261, 941 |
| KroI | GCCGGC | 1 cut(s) | 610 |
| KroNI | GCCGGC | 1 cut(s) | 612 |
| LmnI | GCTCC | 6 cut(s) | 13, 70, 156, 332, 696, 869 |
| Lsp1109I | GCAGC | 1 cut(s) | 1091 |
| LweI | GCATC | 3 cut(s) | 10, 155, 1109 |
| MaeII | ACGT | 2 cut(s) | 678, 1073 |
| MaeIII | GTNAC | 2 cut(s) | 419, 741 |
| MboII | GAAGA | 6 cut(s) | 19, 358, 482, 827, 1360, 1396 |
| MfeI | CAATTG | 1 cut(s) | 304 |
| MflI | RGATCY | 2 cut(s) | 1080, 1307 |
| MhlI | GDGCHC | 6 cut(s) | 18, 101, 251, 337, 917, 1070 |
| MluCI | AATT | 9 cut(s) | 55, 206, 233, 304, 374, 591, 637, 839, 919 |
| MlyI | GAGTC | 2 cut(s) | 412, 677 |
| MnlI | CCTC | 8 cut(s) | 466, 508, 547, 850, 886, 894, 984, 1094 |
| MroNI | GCCGGC | 1 cut(s) | 610 |
| MseI | TTAA | 2 cut(s) | 378, 987 |
| MspA1I | CMGCKG | 2 cut(s) | 156, 1249 |
| MspI | CCGG | 4 cut(s) | 169, 611, 1255, 1372 |
| MspR9I | CCNGG | 3 cut(s) | 967, 1256, 1373 |
| MunI | CAATTG | 1 cut(s) | 304 |
| MvaI | CCWGG | 1 cut(s) | 967 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 182, 717, 1289 |
| NaeI | GCCGGC | 1 cut(s) | 612 |
| NciI | CCSGG | 2 cut(s) | 1256, 1373 |
| NdeI | CATATG | 1 cut(s) | 1336 |
| NgoMIV | GCCGGC | 1 cut(s) | 610 |
| NlaIII | CATG | 5 cut(s) | 133, 191, 341, 650, 1315 |
| NlaIV | GGNNCC | 4 cut(s) | 719, 954, 1253, 1263 |
| NmeAIII | GCCGAG | 2 cut(s) | 305, 1006 |
| NmuCI | GTSAC | 1 cut(s) | 741 |
| NsbI | TGCGCA | 3 cut(s) | 112, 262, 942 |
| PagI | TCATGA | 2 cut(s) | 187, 337 |
| PaqCI | CACCTGC | 1 cut(s) | 1113 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1388 |
| PdiI | GCCGGC | 1 cut(s) | 612 |
| PfeI | GAWTC | 9 cut(s) | 62, 142, 202, 370, 620, 769, 905, 1243, 1365 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1076 |
| PkrI | GCNGC | 1 cut(s) | 1106 |
| Ple19I | CGATCG | 1 cut(s) | 1382 |
| PleI | GAGTC | 2 cut(s) | 411, 677 |
| PpsI | GAGTC | 2 cut(s) | 411, 677 |
| Ppu21I | YACGTR | 1 cut(s) | 679 |
| Psp124BI | GAGCTC | 1 cut(s) | 337 |
| Psp6I | CCWGG | 1 cut(s) | 965 |
| PspGI | CCWGG | 1 cut(s) | 965 |
| PspN4I | GGNNCC | 4 cut(s) | 719, 954, 1253, 1263 |
| PspPI | GGNCC | 2 cut(s) | 887, 1252 |
| PsuI | RGATCY | 2 cut(s) | 1080, 1307 |
| PvuI | CGATCG | 1 cut(s) | 1382 |
| RsaI | GTAC | 4 cut(s) | 125, 658, 726, 1235 |
| RsaNI | GTAC | 4 cut(s) | 124, 657, 725, 1234 |
| SacI | GAGCTC | 1 cut(s) | 337 |
| SaqAI | TTAA | 2 cut(s) | 378, 987 |
| SatI | GCNGC | 1 cut(s) | 1105 |
| Sau96I | GGNCC | 2 cut(s) | 887, 1252 |
| SchI | GAGTC | 2 cut(s) | 412, 677 |
| ScrFI | CCNGG | 3 cut(s) | 967, 1256, 1373 |
| SduI | GDGCHC | 6 cut(s) | 18, 101, 251, 337, 917, 1070 |
| SfaNI | GCATC | 3 cut(s) | 10, 155, 1109 |
| SinI | GGWCC | 1 cut(s) | 1252 |
| Sse9I | AATT | 9 cut(s) | 55, 206, 233, 304, 374, 591, 637, 839, 919 |
| SsiI | CCGC | 8 cut(s) | 154, 277, 396, 408, 867, 994, 1128, 1249 |
| SspI | AATATT | 1 cut(s) | 758 |
| SstI | GAGCTC | 1 cut(s) | 337 |
| StyD4I | CCNGG | 3 cut(s) | 965, 1254, 1371 |
| StyI | CCWWGG | 1 cut(s) | 956 |
| TaaI | ACNGT | 1 cut(s) | 246 |
| TaiI | ACGT | 2 cut(s) | 681, 1076 |
| TaqI | TCGA | 7 cut(s) | 41, 429, 686, 767, 879, 1382, 1391 |
| TasI | AATT | 9 cut(s) | 55, 206, 233, 304, 374, 591, 637, 839, 919 |
| TatI | WGTACW | 2 cut(s) | 656, 1233 |
| TfiI | GAWTC | 9 cut(s) | 62, 142, 202, 370, 620, 769, 905, 1243, 1365 |
| Tru1I | TTAA | 2 cut(s) | 378, 987 |
| Tru9I | TTAA | 2 cut(s) | 378, 987 |
| TscAI | CASTG | 3 cut(s) | 251, 950, 1061 |
| TseFI | GTSAC | 1 cut(s) | 741 |
| TseI | GCWGC | 1 cut(s) | 1104 |
| Tsp45I | GTSAC | 1 cut(s) | 741 |
| TspDTI | ATGAA | 5 cut(s) | 354, 359, 415, 483, 1367 |
| TspRI | CASTG | 3 cut(s) | 251, 950, 1061 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1076 |
| VpaK11BI | GGWCC | 1 cut(s) | 1252 |
| XapI | RAATTY | 3 cut(s) | 55, 591, 839 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 84, 234 |