Rh2BG471000

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000271
Physical Location & Seq
Reverse (-)
66512004 .. 66512678
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG471000.1

Sequence Viewer

Length: 447 bp
ATGGCTGCAACATTCTGCACCGATTGCATTGGAAGGTATGTTGGGTCTAAGATTCAGGAGATCATTTCAATGGTGAAGTGTCCTGATGTGAAATGCAAAGGAGTATTGGAGCCCCAGTCATGTAGCGATCCTATGGATGATGGAGGGGAAGTTGTGACTGCTTCGGAGTGCCCCAACTGCCGGAGACTCTTTTGTGCTCAATGCAGGGTTGTGTGGCATGCAGGGATTGATTGTAGTGAGTTTCAGAAGTTGAGTAGGGATGAAAGATGGATGGAAGATATCATGGTGATGGAGCTTGCTAAGAAACAGCAATGGAGGAGATGCCCAAGGCAGAATTCTGATTTGTTCTTTCTAATATGTGTGGATTCGAATTTTGCTATGGCTGTGGATCCAATTGGAGTAATTGCCATGGATGTAGAGCGAACTGAGAACTTGAAAGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-RING_UBOX

Protein Analysis

148

Amino Acids

16.75

Weight (kDa)

5.05

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 20 - 78 7.8e-09 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 122, 383, 396
AcsI RAATTY 2 cut(s) 334, 370
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 2 cut(s) 69, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 3 cut(s) 122, 383, 396
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 334, 370
AsuHPI GGTGA 2 cut(s) 85, 298
AsuII TTCGAA 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 173
BamHI GGATCC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 199
BccI CCATC 4 cut(s) 134, 261, 265, 283
BcoDI GTCTC 1 cut(s) 178
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 111, 390
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 311
BmuI ACTGGG 1 cut(s) 109
Bpu14I TTCGAA 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 326, 408
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 326, 408
BseGI GGATG 4 cut(s) 142, 265, 276, 418
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 331
BseSI GKGCMC 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 178
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 3 cut(s) 114, 173, 199
Bsp143I GATC 3 cut(s) 60, 127, 388
Bsp19I CCATGG 1 cut(s) 408
BspCNI CTCAG 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 111, 390
BspPI GGATC 3 cut(s) 122, 383, 396
BspT104I TTCGAA 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 317
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 326, 408
BssMI GATC 3 cut(s) 60, 127, 388
BssT1I CCWWGG 2 cut(s) 326, 408
BstAPI GCANNNNNTGC 1 cut(s) 24
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 219, 297
BstDEI CTNAG 3 cut(s) 48, 300, 426
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 4 cut(s) 142, 265, 276, 418
BstKTI GATC 3 cut(s) 63, 130, 391
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 3 cut(s) 60, 127, 388
BstMWI GCNNNNNNNGC 2 cut(s) 24, 177
BstNSI RCATGY 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 4 cut(s) 142, 265, 276, 418
Cac8I GCNNGC 2 cut(s) 219, 297
CviAII CATG 4 cut(s) 120, 218, 283, 409
CviJI RGCY 4 cut(s) 5, 112, 295, 383
CviKI_1 RGCY 4 cut(s) 5, 112, 295, 383
DdeI CTNAG 3 cut(s) 48, 300, 426
DpnI GATC 3 cut(s) 62, 129, 390
DpnII GATC 3 cut(s) 60, 127, 388
Eco130I CCWWGG 2 cut(s) 326, 408
Eco24I GRGCYC 1 cut(s) 114
Eco32I GATATC 1 cut(s) 280
EcoRI GAATTC 1 cut(s) 334
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 326, 408
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 2 cut(s) 326, 408
FaeI CATG 4 cut(s) 123, 221, 286, 412
FaiI YATR 8 cut(s) 39, 121, 134, 219, 284, 358, 380, 410
FatI CATG 4 cut(s) 119, 217, 282, 408
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 4 cut(s) 149, 272, 283, 425
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HapII CCGG 1 cut(s) 181
Hin1II CATG 4 cut(s) 123, 221, 286, 412
HinfI GANTC 3 cut(s) 52, 186, 365
HpaII CCGG 1 cut(s) 181
HphI GGTGA 2 cut(s) 85, 298
Hpy188I TCNGA 3 cut(s) 166, 246, 340
Hpy188III TCNNGA 2 cut(s) 56, 83
HpyAV CCTTC 1 cut(s) 27
HpyCH4V TGCA 6 cut(s) 8, 18, 27, 96, 204, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 177
HpyF3I CTNAG 3 cut(s) 48, 300, 426
Hsp92II CATG 4 cut(s) 123, 221, 286, 412
Kzo9I GATC 3 cut(s) 60, 127, 388
LmnI GCTCC 2 cut(s) 109, 292
LpnPI CCDG 6 cut(s) 41, 96, 128, 190, 194, 207
LweI GCATC 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 154
MalI GATC 3 cut(s) 62, 129, 390
MboI GATC 3 cut(s) 60, 127, 388
MboII GAAGA 1 cut(s) 287
MfeI CAATTG 1 cut(s) 393
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 3 cut(s) 114, 173, 199
MluCI AATT 4 cut(s) 334, 370, 393, 402
MlyI GAGTC 1 cut(s) 180
MnlI CCTC 2 cut(s) 137, 309
MslI CAYNNNNRTG 2 cut(s) 68, 287
MspI CCGG 1 cut(s) 181
MunI CAATTG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 24, 177
NcoI CCATGG 1 cut(s) 408
NdeII GATC 3 cut(s) 60, 127, 388
NlaIII CATG 4 cut(s) 123, 221, 286, 412
NlaIV GGNNCC 2 cut(s) 111, 390
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 221
NspV TTCGAA 1 cut(s) 368
PaeI GCATGC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 52, 365
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 111, 390
PsuI RGATCY 1 cut(s) 388
RseI CAYNNNNRTG 2 cut(s) 68, 287
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 60, 127, 388
SchI GAGTC 1 cut(s) 180
SduI GDGCHC 3 cut(s) 114, 173, 199
SetI ASST 3 cut(s) 38, 297, 442
SfaNI GCATC 1 cut(s) 311
SfuI TTCGAA 1 cut(s) 368
SmiMI CAYNNNNRTG 2 cut(s) 68, 287
SphI GCATGC 1 cut(s) 221
Sse9I AATT 4 cut(s) 334, 370, 393, 402
StyI CCWWGG 2 cut(s) 326, 408
TaqI TCGA 1 cut(s) 368
TasI AATT 4 cut(s) 334, 370, 393, 402
TfiI GAWTC 2 cut(s) 52, 365
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 276
XapI RAATTY 2 cut(s) 334, 370
XceI RCATGY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.