Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

8849386 .. 8849823

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG105700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACAAGCAAGAAAGCCAAAGTGGAGCACAAAGCTTCTGAGACTCATATTGAGATTGTGAACTATGAAGAGGATGCCCTTTTCTCCACAACAATTTCTCGTAAGGGCTCAGATGACGGCATATCAACTCCTCGAACCACTCCTGTTAACTTCATTTATGACAATGAAGAATTTGATGAGTCTAGGAAAAAGCGAAGAAAAACTCAAGATAAAAAATCTTCAAATTTCGATACTTCCAATTCTAAGGAACCGGAAACTTTTGTCTGTGAAATTTGTGTTGATGACAAGTCTGCCAGCGAGTCGTTTGGCGTCCAAAATTGCAGCCATTCTTACTGTAGAGACTGCATAAAGAATTACGTGGCATCCAAGCTTCAAGAGAACATTACAAGCATTAATTGCCCTGTCCCTGATTGCAAAGGGTCACTAGACCCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

145

Amino Acids

16.36

Weight (kDa)

5.31

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	89 - 134	4.2e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	170, 223, 270
AcyI	GRCGYC	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	222, 374
AluBI	AGCT	2 cut(s)	35, 370
AluI	AGCT	2 cut(s)	35, 370
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	2 cut(s)	35, 333
Ama87I	CYCGRG	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	321
ApoI	RAATTY	3 cut(s)	170, 223, 270
AseI	ATTAAT	1 cut(s)	393
AvaI	CYCGRG	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	333
BceAI	ACGGC	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	35, 333
BfaI	CTAG	2 cut(s)	183, 425
BfmI	CTRYAG	1 cut(s)	334
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	249
BmsI	GCATC	2 cut(s)	64, 371
BpuEI	CTTGAG	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	250
BseGI	GGATG	2 cut(s)	79, 362
BseMII	CTCAG	2 cut(s)	30, 123
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	35, 333
BsmFI	GGGAC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	30, 110
BspCNI	CTCAG	2 cut(s)	31, 122
BspLI	GGNNCC	1 cut(s)	249
BssNI	GRCGYC	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	309
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstBAI	YACGTR	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	39, 109, 243
BstF5I	GGATG	2 cut(s)	79, 362
BstMAI	GTCTC	2 cut(s)	35, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstSFI	CTRYAG	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	79, 362
Cac8I	GCNNGC	1 cut(s)	295
CseI	GACGC	1 cut(s)	298
CviJI	RGCY	5 cut(s)	17, 35, 108, 324, 370
CviKI_1	RGCY	5 cut(s)	17, 35, 108, 324, 370
DdeI	CTNAG	3 cut(s)	39, 109, 243
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	110
FaiI	YATR	5 cut(s)	48, 66, 122, 159, 347
FaqI	GGGAC	1 cut(s)	389
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	2 cut(s)	86, 349
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	322
FspBI	CTAG	2 cut(s)	183, 425
GluI	GCNGC	1 cut(s)	322
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	309
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	2 cut(s)	33, 368
HinfI	GANTC	3 cut(s)	43, 179, 299
HpaI	GTTAAC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	61, 148
Hpy188I	TCNGA	2 cut(s)	40, 112
Hpy188III	TCNNGA	2 cut(s)	206, 374
Hpy8I	GTNNAC	2 cut(s)	61, 148
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	3 cut(s)	321, 345, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	3 cut(s)	39, 109, 243
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	309
KspAI	GTTAAC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	5 cut(s)	156, 264, 307, 414, 420
Lsp1109I	GCAGC	1 cut(s)	333
LweI	GCATC	2 cut(s)	64, 371
MaeI	CTAG	2 cut(s)	183, 425
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	420
MboII	GAAGA	4 cut(s)	80, 179, 207, 210
MhlI	GDGCHC	2 cut(s)	30, 110
MluCI	AATT	8 cut(s)	93, 170, 223, 238, 270, 316, 352, 394
MlyI	GAGTC	3 cut(s)	37, 188, 308
MnlI	CCTC	2 cut(s)	64, 141
MseI	TTAA	2 cut(s)	147, 393
MspI	CCGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	396
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	3 cut(s)	37, 187, 307
PpsI	GAGTC	3 cut(s)	37, 187, 307
Ppu21I	YACGTR	1 cut(s)	358
PshBI	ATTAAT	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	147, 393
SatI	GCNGC	1 cut(s)	322
SchI	GAGTC	3 cut(s)	37, 188, 308
SduI	GDGCHC	2 cut(s)	30, 110
SetI	ASST	3 cut(s)	37, 360, 372
SfaNI	GCATC	2 cut(s)	64, 371
SfcI	CTRYAG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	8 cut(s)	93, 170, 223, 238, 270, 316, 352, 394
SspMI	CTAG	2 cut(s)	183, 425
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	133, 228
TasI	AATT	8 cut(s)	93, 170, 223, 238, 270, 316, 352, 394
Tru1I	TTAA	2 cut(s)	147, 393
Tru9I	TTAA	2 cut(s)	147, 393
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	3 cut(s)	81, 142, 180
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	3 cut(s)	170, 223, 270
XspI	CTAG	2 cut(s)	183, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.