Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

18318966 .. 18320263

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G191800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTGAAGCCAGGTAAATCTTCAATCCCCAAAAACCCTCCCTCCAAAAAACGATATGGCAACCCACAATCAAGAACCCCCTATAAACCCCCTATGGATTTATCCATAACTGAAGTTGGGGAGTCTTTCAACTCGGAGAATACAAAGACCCAGCAGGCTTTTGTCTGTGAAATCTGTGTTGAGCTCAAGGCAGCAGCATCCGATTGGTTTGGCATAAAAAATTGCAGCCATGCTTACTGTAGGGACTGCATGGTCAGTTACGTGGCCTCCAAGCTTGAAGAGAACATCACAAGCATCCGGTGCCCCGACCCAGATTGCACATCAGGGCTCCTAGATCCCGAGCATTGTCGTTCGATCCTCCCCCGGGAGGTGTTTGAGAGGTGGGGAGTTGCCTTGTGTGAGGCTGTGGTACCTGCCTCTCAAAAGGTTTACTGTCCCTACAAGGATTGCTCTGCAATGCTAATCATTGATGATGATGGGAAGAAAGGGATGATCGTAAGGCAATCGGACTGCCCCCATTGTAGGAAATTGTTCTGCGCGCAGTGTAAGGTTCCTTGGCATGTAGGGTTTGAGTGTGCCAAGTTTCAGAAGTTGAACAAGGTTGAGAGGGAAAGGGAGAACATGTTGAGAAACCTTGCGAAGAAGGAACAATGGAGGAGATGTCCCAATTGCAGGTTCTATGTGGAAAGATCGCGGGGTTGCAACATCATCCAATGCAGGTGCAAAACTAAGTTCTGCTACGAATGTGGTGAACTTTACATCAATTGCAAGTGCAAAATTGATTGTTTTGTTTGTTTGTTGGGGTGCTGCGGACTTATTGTTGTTGTTGTTAGTTTTTTTGTTGTTATTGTTATGTTCTGGCGGGCAGTGGCAGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

294

Amino Acids

33.48

Weight (kDa)

8.68

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	708
AasI	GACNNNNNNGTC	1 cut(s)	251
Acc36I	ACCTGC	3 cut(s)	421, 663, 708
Acc65I	GGTACC	1 cut(s)	409
AccB1I	GGYRCC	2 cut(s)	300, 409
AccII	CGCG	2 cut(s)	539, 694
AciI	CCGC	3 cut(s)	694, 810, 862
AclWI	GGATC	2 cut(s)	329, 349
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	4 cut(s)	364, 367, 522, 672
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	5 cut(s)	7, 24, 130, 278, 595
AjnI	CCWGG	1 cut(s)	10
AjuI	GAANNNNNNNTTGG	2 cut(s)	659, 691
AluBI	AGCT	2 cut(s)	184, 274
AluI	AGCT	2 cut(s)	184, 274
Alw21I	GWGCWC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	329, 349
Ama87I	CYCGRG	2 cut(s)	338, 363
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	4 cut(s)	191, 194, 225, 807
Asp700I	GAANNNNTTC	1 cut(s)	530
Asp718I	GGTACC	1 cut(s)	409
AspLEI	GCGC	2 cut(s)	539, 541
AsuC2I	CCSGG	2 cut(s)	364, 365
AsuHPI	GGTGA	1 cut(s)	761
AvaI	CYCGRG	2 cut(s)	338, 363
BaeGI	GKGCMC	1 cut(s)	305
BanI	GGYRCC	2 cut(s)	300, 409
BanII	GRGCYC	2 cut(s)	186, 330
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	203, 206, 237, 794
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	12
BcnI	CCSGG	2 cut(s)	364, 365
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	238
BfuAI	ACCTGC	3 cut(s)	421, 663, 708
BisI	GCNGC	4 cut(s)	192, 195, 226, 808
BlsI	GCNGC	4 cut(s)	193, 196, 227, 809
Bme1390I	CCNGG	3 cut(s)	12, 364, 365
BmeT110I	CYCGRG	2 cut(s)	338, 363
BmiI	GGNNCC	4 cut(s)	302, 329, 411, 552
BmrFI	CCNGG	3 cut(s)	12, 364, 365
BmsI	GCATC	2 cut(s)	206, 303
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	2 cut(s)	364, 365
BsaAI	YACGTR	1 cut(s)	262
BsaJI	CCNNGG	3 cut(s)	362, 363, 554
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	8 cut(s)	26, 56, 251, 281, 608, 638, 646, 676
Bsc4I	CCNNNNNNNGG	4 cut(s)	364, 367, 522, 672
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	362, 363, 554
BseGI	GGATG	4 cut(s)	197, 294, 495, 708
BseLI	CCNNNNNNNGG	4 cut(s)	364, 367, 522, 672
BseMI	GCAATG	1 cut(s)	462
BsePI	GCGCGC	1 cut(s)	537
BseRI	GAGGAG	1 cut(s)	670
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	4 cut(s)	203, 206, 237, 794
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	2 cut(s)	539, 694
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	2 cut(s)	300, 409
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	2 cut(s)	338, 363
BsiSI	CCGG	2 cut(s)	298, 364
BslFI	GGGAC	3 cut(s)	257, 420, 648
BslI	CCNNNNNNNGG	4 cut(s)	364, 367, 522, 672
BsmFI	GGGAC	3 cut(s)	257, 420, 648
BsnI	GGCC	1 cut(s)	266
BsoBI	CYCGRG	2 cut(s)	338, 363
Bsp1286I	GDGCHC	3 cut(s)	186, 305, 330
Bsp143I	GATC	4 cut(s)	334, 354, 492, 689
BspACI	CCGC	3 cut(s)	694, 810, 862
BspANI	GGCC	1 cut(s)	266
BspFNI	CGCG	2 cut(s)	539, 694
BspLI	GGNNCC	4 cut(s)	302, 329, 411, 552
BspMI	ACCTGC	3 cut(s)	421, 663, 708
BspPI	GGATC	2 cut(s)	329, 349
BspT107I	GGYRCC	2 cut(s)	300, 409
BsrDI	GCAATG	1 cut(s)	462
BssECI	CCNNGG	3 cut(s)	362, 363, 554
BssHII	GCGCGC	1 cut(s)	537
BssMI	GATC	4 cut(s)	334, 354, 492, 689
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	239, 434
Bst6I	CTCTTC	1 cut(s)	273
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	156, 539, 864
BstDEI	CTNAG	1 cut(s)	729
BstF5I	GGATG	4 cut(s)	197, 294, 495, 708
BstFNI	CGCG	2 cut(s)	539, 694
BstHHI	GCGC	2 cut(s)	539, 541
BstKTI	GATC	4 cut(s)	337, 357, 495, 692
BstMBI	GATC	4 cut(s)	334, 354, 492, 689
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	2 cut(s)	563, 625
BstSCI	CCNGG	3 cut(s)	10, 362, 363
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	305
BstUI	CGCG	2 cut(s)	539, 694
BstV1I	GCAGC	4 cut(s)	203, 206, 237, 794
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	4 cut(s)	197, 294, 495, 708
BtsI	GCAGTG	2 cut(s)	548, 873
BtsIMutI	CAGTG	2 cut(s)	548, 873
BveI	ACCTGC	3 cut(s)	421, 663, 708
Cac8I	GCNNGC	3 cut(s)	156, 539, 864
CfoI	GCGC	2 cut(s)	539, 541
Cfr9I	CCCGGG	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	5 cut(s)	230, 250, 560, 622, 879
CviJI	RGCY	9 cut(s)	10, 158, 184, 228, 266, 274, 328, 404, 877
CviKI_1	RGCY	9 cut(s)	10, 158, 184, 228, 266, 274, 328, 404, 877
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	1 cut(s)	729
DpnI	GATC	4 cut(s)	336, 356, 494, 691
DpnII	GATC	4 cut(s)	334, 354, 492, 689
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	554
Eco24I	GRGCYC	2 cut(s)	186, 330
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	132
Eco88I	CYCGRG	2 cut(s)	338, 363
EcoICRI	GAGCTC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	554
EcoT38I	GRGCYC	2 cut(s)	186, 330
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	5 cut(s)	233, 253, 563, 625, 882
FaqI	GGGAC	3 cut(s)	257, 420, 648
FatI	CATG	5 cut(s)	229, 249, 559, 621, 878
FauI	CCCGC	2 cut(s)	687, 855
Fnu4HI	GCNGC	4 cut(s)	192, 195, 226, 808
FokI	GGATG	4 cut(s)	184, 281, 502, 695
FriOI	GRGCYC	2 cut(s)	186, 330
Fsp4HI	GCNGC	4 cut(s)	192, 195, 226, 808
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	2 cut(s)	538, 540
GluI	GCNGC	4 cut(s)	192, 195, 226, 808
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	2 cut(s)	298, 364
HhaI	GCGC	2 cut(s)	539, 541
Hin1II	CATG	5 cut(s)	233, 253, 563, 625, 882
Hin6I	GCGC	2 cut(s)	537, 539
HinP1I	GCGC	2 cut(s)	537, 539
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	2 cut(s)	298, 364
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	2 cut(s)	430, 752
Hpy188I	TCNGA	4 cut(s)	136, 202, 508, 588
Hpy188III	TCNNGA	2 cut(s)	72, 338
Hpy8I	GTNNAC	2 cut(s)	430, 752
HpyAV	CCTTC	1 cut(s)	637
HpyCH4III	ACNGT	2 cut(s)	239, 434
HpyCH4IV	ACGT	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	1 cut(s)	729
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	5 cut(s)	233, 253, 563, 625, 882
HspAI	GCGC	2 cut(s)	537, 539
KpnI	GGTACC	1 cut(s)	413
Kzo9I	GATC	4 cut(s)	334, 354, 492, 689
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	4 cut(s)	203, 206, 237, 794
LweI	GCATC	2 cut(s)	206, 303
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	4 cut(s)	336, 356, 494, 691
MboI	GATC	4 cut(s)	334, 354, 492, 689
MboII	GAAGA	4 cut(s)	12, 290, 493, 652
MfeI	CAATTG	2 cut(s)	667, 763
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	3 cut(s)	186, 305, 330
MluCI	AATT	5 cut(s)	220, 527, 667, 763, 777
MlyI	GAGTC	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	530
MspI	CCGG	2 cut(s)	298, 364
MspR9I	CCNGG	3 cut(s)	12, 364, 365
MunI	CAATTG	2 cut(s)	667, 763
MvaI	CCWGG	1 cut(s)	12
MvnI	CGCG	2 cut(s)	539, 694
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	2 cut(s)	364, 365
NdeII	GATC	4 cut(s)	334, 354, 492, 689
NlaIII	CATG	5 cut(s)	233, 253, 563, 625, 882
NlaIV	GGNNCC	4 cut(s)	302, 329, 411, 552
NspI	RCATGY	2 cut(s)	563, 625
PaqCI	CACCTGC	1 cut(s)	708
PauI	GCGCGC	1 cut(s)	537
PciI	ACATGT	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	530
PkrI	GCNGC	4 cut(s)	193, 196, 227, 809
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Ppu21I	YACGTR	1 cut(s)	262
PscI	ACATGT	1 cut(s)	621
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	4 cut(s)	302, 329, 411, 552
PsuI	RGATCY	1 cut(s)	334
PteI	GCGCGC	1 cut(s)	537
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	186
SatI	GCNGC	4 cut(s)	192, 195, 226, 808
Sau3AI	GATC	4 cut(s)	334, 354, 492, 689
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	3 cut(s)	12, 364, 365
SduI	GDGCHC	3 cut(s)	186, 305, 330
SfaNI	GCATC	2 cut(s)	206, 303
SfcI	CTRYAG	1 cut(s)	238
SmaI	CCCGGG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	5 cut(s)	220, 527, 667, 763, 777
SsiI	CCGC	3 cut(s)	694, 810, 862
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	3 cut(s)	10, 362, 363
StyI	CCWWGG	1 cut(s)	554
TaaI	ACNGT	2 cut(s)	239, 434
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	353
TasI	AATT	5 cut(s)	220, 527, 667, 763, 777
TscAI	CASTG	2 cut(s)	548, 873
TseI	GCWGC	4 cut(s)	191, 194, 225, 807
TspMI	CCCGGG	1 cut(s)	363
TspRI	CASTG	2 cut(s)	548, 873
XceI	RCATGY	2 cut(s)	563, 625
XmaI	CCCGGG	1 cut(s)	363
XmnI	GAANNNNTTC	1 cut(s)	530
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.