Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

45905583 .. 45908807

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCTCAATACCGCCGAAACACTCTGGATCGCTTGGTCAATTGTCAGATATGCCGTCAAGGATTTGGAGCTCATGAATTCATGAAGAAGAAAGGCGATCAATCCCTCAGGAATCAATTTAACAATACCCTGAAATCCGCCCCGAGTCCCTCTAAAGCAGCAGCATCGGGTAACTTCATCGACCTCTCTGCTGAAACCTTGAACTATTACGATAGTGATGAAGAGGTTAGGGTTCTTAGGTTCAAACCCTCCAATATCCCTTTCGGGAAAAACAAGCGCATACAAAACGAAGCTCCAAAAAATATTGCAAACATTGGGTGCCTTGTACCCGATTGCAAAGGGTCACTTGATCCCGAATATTGCCATTCGATTCTAAAACCCGATGTGTTTGAAAAATGGGGAACAAGGTTGTGCGAAGATGTGATTATTGGGTCTCAGAAATTTTACTGCCCCTTTAAGGACTGCTCCGCAATGTTGATCGACGATGGGCCAGAGGTAGTGAGGGAATCGGAGTGCCCTAATTGTAAAAGATTGTTCTGTGCGCAGTGTAAGGTTCCTTGGCACGCCAGGATTACTTGTGCCGAGTTTAAGAGGCGGAATAAGGATGATACTGAAAAGGATGATCTTGTTATGGAGAAACTTGCTTACAAGAAGCACTGGAGAAAGTGCCCAACGTGTGGGATCTATGTAGAAAGATCAGGAGGCTGCACATCAATACGATGCAGCTTTGGTGCGGGACTTATTTCAACTTCCATTGTGGACGACTGGGTTGTCCTTTTTGTGGAAAACACAGAAAGAAAATTCGATACCATTTCATTAGATCCAGAGGATTATAGGCTGGTGGCTGTTTTGAGCAAGAAGCTTGCTTCCCTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

292

Amino Acids

33.21

Weight (kDa)

8.49

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	137 - 193	7.2e-10	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	770
Acc16I	TGCGCA	1 cut(s)	543
AccB1I	GGYRCC	1 cut(s)	318
AccB7I	CCANNNNNTGG	1 cut(s)	677
AciI	CCGC	5 cut(s)	13, 138, 468, 595, 734
AclWI	GGATC	4 cut(s)	36, 344, 689, 815
AcsI	RAATTY	3 cut(s)	77, 440, 800
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	3 cut(s)	457, 677, 781
AflIII	ACRYGT	1 cut(s)	674
AgsI	TTSAA	4 cut(s)	202, 244, 392, 747
AjnI	CCWGG	1 cut(s)	566
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	4 cut(s)	71, 293, 726, 862
AluI	AGCT	4 cut(s)	71, 293, 726, 862
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	2 cut(s)	9, 438
AlwI	GGATC	4 cut(s)	36, 344, 689, 815
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	4 cut(s)	158, 161, 705, 723
ApoI	RAATTY	3 cut(s)	77, 440, 800
AspLEI	GCGC	2 cut(s)	279, 544
AspS9I	GGNCC	1 cut(s)	488
AvaI	CYCGRG	1 cut(s)	142
AxyI	CCTNAGG	1 cut(s)	107
BaeGI	GKGCMC	2 cut(s)	518, 671
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	4 cut(s)	170, 173, 692, 735
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	1 cut(s)	39
BcgI	CGANNNNNNTGC	4 cut(s)	147, 170, 181, 204
BciT130I	CCWGG	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	9, 438
BisI	GCNGC	4 cut(s)	159, 162, 706, 724
BlsI	GCNGC	4 cut(s)	160, 163, 707, 725
Bme1390I	CCNGG	1 cut(s)	568
BmeT110I	CYCGRG	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	2 cut(s)	320, 555
BmrFI	CCNGG	1 cut(s)	568
BmrI	ACTGGG	1 cut(s)	775
BmsI	GCATC	2 cut(s)	173, 710
BmuI	ACTGGG	1 cut(s)	775
BpmI	CTGGAG	1 cut(s)	679
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	3 cut(s)	457, 677, 781
Bse1I	ACTGG	2 cut(s)	662, 770
Bse21I	CCTNAGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	568
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	2 cut(s)	610, 625
BseLI	CCNNNNNNNGG	3 cut(s)	457, 677, 781
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	2 cut(s)	121, 449
BseNI	ACTGG	2 cut(s)	662, 770
BseSI	GKGCMC	2 cut(s)	518, 671
BseXI	GCAGC	4 cut(s)	170, 173, 692, 735
BsgI	GTGCAG	1 cut(s)	691
BshFI	GGCC	1 cut(s)	490
BshNI	GGYRCC	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	142
BslFI	GGGAC	2 cut(s)	132, 750
BslI	CCNNNNNNNGG	3 cut(s)	457, 677, 781
BsmAI	GTCTC	2 cut(s)	9, 438
BsmFI	GGGAC	2 cut(s)	132, 750
BsnI	GGCC	1 cut(s)	490
Bso31I	GGTCTC	1 cut(s)	438
BsoBI	CYCGRG	1 cut(s)	142
Bsp1286I	GDGCHC	3 cut(s)	73, 518, 671
Bsp143I	GATC	8 cut(s)	28, 97, 349, 477, 622, 681, 695, 820
BspACI	CCGC	5 cut(s)	13, 138, 468, 595, 734
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	2 cut(s)	120, 448
BspHI	TCATGA	2 cut(s)	73, 81
BspLI	GGNNCC	2 cut(s)	320, 555
BspPI	GGATC	4 cut(s)	36, 344, 689, 815
BspT107I	GGYRCC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	662, 770
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	8 cut(s)	28, 97, 349, 477, 622, 681, 695, 820
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	1 cut(s)	568
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	564, 864
BstDEI	CTNAG	3 cut(s)	107, 236, 435
BstF5I	GGATG	2 cut(s)	610, 625
BstHHI	GCGC	2 cut(s)	279, 544
BstKTI	GATC	8 cut(s)	31, 100, 352, 480, 625, 684, 698, 823
BstMAI	GTCTC	2 cut(s)	9, 438
BstMBI	GATC	8 cut(s)	28, 97, 349, 477, 622, 681, 695, 820
BstNI	CCWGG	1 cut(s)	568
BstSCI	CCNGG	1 cut(s)	566
BstSLI	GKGCMC	2 cut(s)	518, 671
BstV1I	GCAGC	4 cut(s)	170, 173, 692, 735
BstX2I	RGATCY	2 cut(s)	681, 820
BstYI	RGATCY	2 cut(s)	681, 820
Bsu36I	CCTNAGG	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	610, 625
BtsI	GCAGTG	1 cut(s)	551
BtsIMutI	CAGTG	2 cut(s)	551, 655
Cac8I	GCNNGC	2 cut(s)	564, 864
CciI	TCATGA	2 cut(s)	73, 81
CfoI	GCGC	2 cut(s)	279, 544
Cfr13I	GGNCC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	2 cut(s)	74, 82
CviJI	RGCY	8 cut(s)	71, 293, 490, 705, 726, 838, 845, 862
CviKI_1	RGCY	8 cut(s)	71, 293, 490, 705, 726, 838, 845, 862
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	3 cut(s)	107, 236, 435
DpnI	GATC	8 cut(s)	30, 99, 351, 479, 624, 683, 697, 822
DpnII	GATC	8 cut(s)	28, 97, 349, 477, 622, 681, 695, 820
DrdI	GACNNNNNNGTC	1 cut(s)	770
DseDI	GACNNNNNNGTC	1 cut(s)	770
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EciI	GGCGGA	2 cut(s)	127, 610
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	557
Eco24I	GRGCYC	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	566
EcoT14I	CCWWGG	1 cut(s)	557
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	2 cut(s)	77, 85
FaiI	YATR	7 cut(s)	52, 75, 83, 281, 632, 687, 834
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FaqI	GGGAC	2 cut(s)	132, 750
FatI	CATG	2 cut(s)	73, 81
FauI	CCCGC	1 cut(s)	727
Fnu4HI	GCNGC	4 cut(s)	159, 162, 706, 724
FokI	GGATG	2 cut(s)	617, 632
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	4 cut(s)	159, 162, 706, 724
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	2 cut(s)	278, 543
GluI	GCNGC	4 cut(s)	159, 162, 706, 724
GsuI	CTGGAG	1 cut(s)	679
HaeIII	GGCC	1 cut(s)	490
HhaI	GCGC	2 cut(s)	279, 544
Hin1II	CATG	2 cut(s)	77, 85
Hin6I	GCGC	2 cut(s)	277, 542
HinP1I	GCGC	2 cut(s)	277, 542
HindIII	AAGCTT	1 cut(s)	860
HinfI	GANTC	4 cut(s)	112, 145, 370, 506
Hpy166II	GTNNAC	1 cut(s)	760
Hpy188I	TCNGA	3 cut(s)	48, 438, 511
Hpy188III	TCNNGA	8 cut(s)	26, 74, 82, 109, 265, 353, 699, 824
Hpy8I	GTNNAC	1 cut(s)	760
Hpy99I	CGWCG	1 cut(s)	485
HpyCH4IV	ACGT	1 cut(s)	674
HpyCH4V	TGCA	4 cut(s)	308, 336, 708, 723
HpyF3I	CTNAG	3 cut(s)	107, 236, 435
HpySE526I	ACGT	1 cut(s)	674
Hsp92II	CATG	2 cut(s)	77, 85
HspAI	GCGC	2 cut(s)	277, 542
Kzo9I	GATC	8 cut(s)	28, 97, 349, 477, 622, 681, 695, 820
LmnI	GCTCC	3 cut(s)	68, 298, 470
Lsp1109I	GCAGC	4 cut(s)	170, 173, 692, 735
LweI	GCATC	2 cut(s)	173, 710
MaeII	ACGT	1 cut(s)	674
MaeIII	GTNAC	2 cut(s)	170, 342
MalI	GATC	8 cut(s)	30, 99, 351, 479, 624, 683, 697, 822
MboI	GATC	8 cut(s)	28, 97, 349, 477, 622, 681, 695, 820
MboII	GAAGA	4 cut(s)	97, 100, 233, 428
MfeI	CAATTG	1 cut(s)	40
MflI	RGATCY	2 cut(s)	681, 820
MhlI	GDGCHC	3 cut(s)	73, 518, 671
MluCI	AATT	6 cut(s)	40, 77, 116, 440, 520, 800
MlyI	GAGTC	1 cut(s)	154
MseI	TTAA	3 cut(s)	120, 456, 588
MspR9I	CCNGG	1 cut(s)	568
MunI	CAATTG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	568
NdeII	GATC	8 cut(s)	28, 97, 349, 477, 622, 681, 695, 820
NlaIII	CATG	2 cut(s)	77, 85
NlaIV	GGNNCC	2 cut(s)	320, 555
NmeAIII	GCCGAG	1 cut(s)	607
NmuCI	GTSAC	1 cut(s)	342
NsbI	TGCGCA	1 cut(s)	543
PagI	TCATGA	2 cut(s)	73, 81
PfeI	GAWTC	3 cut(s)	112, 370, 506
PflMI	CCANNNNNTGG	1 cut(s)	677
PkrI	GCNGC	4 cut(s)	160, 163, 707, 725
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	2 cut(s)	320, 555
PspPI	GGNCC	1 cut(s)	488
PsuI	RGATCY	2 cut(s)	681, 820
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	120, 456, 588
SatI	GCNGC	4 cut(s)	159, 162, 706, 724
Sau3AI	GATC	8 cut(s)	28, 97, 349, 477, 622, 681, 695, 820
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	568
SduI	GDGCHC	3 cut(s)	73, 518, 671
SfaNI	GCATC	2 cut(s)	173, 710
Sse9I	AATT	6 cut(s)	40, 77, 116, 440, 520, 800
SsiI	CCGC	5 cut(s)	13, 138, 468, 595, 734
SspI	AATATT	2 cut(s)	304, 359
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	566
StyI	CCWWGG	1 cut(s)	557
TaiI	ACGT	1 cut(s)	677
TaqI	TCGA	4 cut(s)	180, 368, 480, 804
TasI	AATT	6 cut(s)	40, 77, 116, 440, 520, 800
TfiI	GAWTC	3 cut(s)	112, 370, 506
Tru1I	TTAA	3 cut(s)	120, 456, 588
Tru9I	TTAA	3 cut(s)	120, 456, 588
TscAI	CASTG	2 cut(s)	551, 662
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	4 cut(s)	158, 161, 705, 723
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	6 cut(s)	70, 90, 98, 166, 234, 804
TspRI	CASTG	2 cut(s)	551, 662
Van91I	CCANNNNNTGG	1 cut(s)	677
XapI	RAATTY	3 cut(s)	77, 440, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.