Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

5089816 .. 5091903

Gene Structure 2088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAGTCTTTTCGAATTCCAATGTTTAACGTTAGCCTTTCCATCTCTGTTTATAAGAATCATTCGACCTAATCCTAAGAAGTACGTCTACTCTTTTCGTGAAACAAAGAAAGAAAACCCTAGCCCTTCTGCAGCTTTTGTCATCATGGAAGGGGAAGCTTCCAGTTTGGTGAAGGATCTAGTTGTTTGTGAGATTTGTGCTGAGGACAAGTCTGCAAACGACTTGTTTGGGATTCACAAATGCAGCCATTCATACTGTAGGGACTGCGTAAATAATTACGTGGCATCCAAGCTTCAAGAGAACATTGCAAGCATTAGCTGTCCTGTTCCCGATTGCAAAGGATCGCTAGAGCCCGAGCATTGTCAATCAATTCTCCCTCCAGAAGTGTTTGACAGGTGGTTAAGTGTATTGTGCGAATCTTTGGTTCTTGAGTCTGAGAAGTTCTACTGTCCCTTTAAGGATTGCTCAGCGATGTTAATAGATGATGGGAAAGAGGTTATACGAGAATCGGAGTGTCCCAATTGTAGGAGATTGTTCTGTGCGCAGTGTAAGGTTTCCTGGCATGCGGGGATCGACTGCGCAGAATTTCAGAACTTGAATGAAAATGAAAAGGAAAATGAAGATATTTTATTGAGGATCGTTGCTCACGAGCAAAAATGGAGGAGGTGTACAAATTGCCAGTACTATGTTGAAAAATCTGATGGTTGCTCTTACATGAAATGCAGATGTGGATATGCTTTTTGCTACAACTGTGGCGTAAAAGCTCCCTTAGGTTCCCATACCTTTCATTGTCCAAGCTGTAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

270

Amino Acids

30.67

Weight (kDa)

5.86

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	133 - 193	1e-10	IBR domain, a half RING-finger domain
IBR	PF01485	211 - 255	5.2e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
Acc16I	TGCGCA	2 cut(s)	543, 580
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	1 cut(s)	566
AclI	AACGTT	1 cut(s)	29
AclWI	GGATC	4 cut(s)	183, 349, 578, 644
AcsI	RAATTY	2 cut(s)	14, 584
AfaI	GTAC	3 cut(s)	83, 670, 683
AfiI	CCNNNNNNNGG	1 cut(s)	525
AgsI	TTSAA	3 cut(s)	296, 598, 692
AjnI	CCWGG	1 cut(s)	557
AluBI	AGCT	6 cut(s)	134, 158, 292, 318, 764, 798
AluI	AGCT	6 cut(s)	134, 158, 292, 318, 764, 798
AlwI	GGATC	4 cut(s)	183, 349, 578, 644
Ama87I	CYCGRG	1 cut(s)	353
ApeKI	GCWGC	2 cut(s)	131, 243
ApoI	RAATTY	2 cut(s)	14, 584
AspLEI	GCGC	2 cut(s)	544, 581
AsuHPI	GGTGA	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	12
AvaI	CYCGRG	1 cut(s)	353
AxyI	CCTNAGG	1 cut(s)	769
BanII	GRGCYC	1 cut(s)	354
BarI	GAAGNNNNNNTAC	2 cut(s)	71, 103
BauI	CACGAG	1 cut(s)	647
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	143, 255
BccI	CCATC	3 cut(s)	49, 479, 695
BciT130I	CCWGG	1 cut(s)	559
BfaI	CTAG	3 cut(s)	120, 179, 347
BfmI	CTRYAG	2 cut(s)	129, 256
BisI	GCNGC	2 cut(s)	132, 244
BlpI	GCTNAGC	1 cut(s)	466
BlsI	GCNGC	2 cut(s)	133, 245
BmcAI	AGTACT	1 cut(s)	683
Bme1390I	CCNGG	1 cut(s)	559
BmeT110I	CYCGRG	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	775
BmrFI	CCNGG	1 cut(s)	559
BmsI	GCATC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	201
Bpu1102I	GCTNAGC	1 cut(s)	466
Bpu14I	TTCGAA	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	652, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse1I	ACTGG	2 cut(s)	162, 679
Bse21I	CCTNAGG	1 cut(s)	769
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	559
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	3 cut(s)	192, 426, 480
BseNI	ACTGG	2 cut(s)	162, 679
BseRI	GAGGAG	1 cut(s)	676
BseXI	GCAGC	2 cut(s)	143, 255
BsiHKCI	CYCGRG	1 cut(s)	353
BslFI	GGGAC	3 cut(s)	275, 435, 501
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmFI	GGGAC	3 cut(s)	275, 435, 501
BsoBI	CYCGRG	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp1407I	TGTACA	1 cut(s)	668
Bsp143I	GATC	4 cut(s)	175, 341, 570, 636
Bsp1720I	GCTNAGC	1 cut(s)	466
BspACI	CCGC	1 cut(s)	566
BspCNI	CTCAG	3 cut(s)	193, 427, 479
BspLI	GGNNCC	1 cut(s)	775
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	4 cut(s)	183, 349, 578, 644
BspT104I	TTCGAA	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	303
BsrGI	TGTACA	1 cut(s)	668
BsrI	ACTGG	2 cut(s)	162, 679
BssMI	GATC	4 cut(s)	175, 341, 570, 636
BssSI	CACGAG	1 cut(s)	647
Bst2BI	CACGAG	1 cut(s)	647
Bst2UI	CCWGG	1 cut(s)	559
Bst4CI	ACNGT	3 cut(s)	257, 449, 752
BstAUI	TGTACA	1 cut(s)	668
BstBAI	YACGTR	1 cut(s)	280
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	310, 564
BstDEI	CTNAG	5 cut(s)	75, 201, 435, 466, 769
BstF5I	GGATG	1 cut(s)	284
BstHHI	GCGC	2 cut(s)	544, 581
BstKTI	GATC	4 cut(s)	178, 344, 573, 639
BstMBI	GATC	4 cut(s)	175, 341, 570, 636
BstNI	CCWGG	1 cut(s)	559
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	557
BstSFI	CTRYAG	2 cut(s)	129, 256
BstV1I	GCAGC	2 cut(s)	143, 255
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu36I	CCTNAGG	1 cut(s)	769
BtgZI	GCGATG	1 cut(s)	485
BtsCI	GGATG	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	551
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	2 cut(s)	310, 564
CfoI	GCGC	2 cut(s)	544, 581
Csp6I	GTAC	3 cut(s)	82, 669, 682
CviAII	CATG	3 cut(s)	145, 563, 715
CviQI	GTAC	3 cut(s)	82, 669, 682
DdeI	CTNAG	5 cut(s)	75, 201, 435, 466, 769
DpnI	GATC	4 cut(s)	177, 343, 572, 638
DpnII	GATC	4 cut(s)	175, 341, 570, 636
Eco24I	GRGCYC	1 cut(s)	354
Eco81I	CCTNAGG	1 cut(s)	769
Eco88I	CYCGRG	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	557
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	3 cut(s)	148, 566, 718
FaiI	YATR	9 cut(s)	53, 146, 253, 500, 564, 687, 716, 735, 780
FaqI	GGGAC	3 cut(s)	275, 435, 501
FatI	CATG	3 cut(s)	144, 562, 714
FauI	CCCGC	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	132, 244
FokI	GGATG	1 cut(s)	271
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	132, 244
FspBI	CTAG	3 cut(s)	120, 179, 347
FspI	TGCGCA	2 cut(s)	543, 580
GlaI	GCGC	2 cut(s)	543, 580
GluI	GCNGC	2 cut(s)	132, 244
GsuI	CTGGAG	1 cut(s)	363
HhaI	GCGC	2 cut(s)	544, 581
Hin1II	CATG	3 cut(s)	148, 566, 718
Hin6I	GCGC	2 cut(s)	542, 579
HinP1I	GCGC	2 cut(s)	542, 579
HindIII	AAGCTT	2 cut(s)	156, 290
HinfI	GANTC	6 cut(s)	4, 57, 232, 416, 431, 506
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	88, 669
Hpy188I	TCNGA	4 cut(s)	436, 511, 591, 700
Hpy188III	TCNNGA	6 cut(s)	98, 296, 329, 380, 428, 647
Hpy8I	GTNNAC	2 cut(s)	88, 669
HpyAV	CCTTC	3 cut(s)	135, 143, 166
HpyCH4III	ACNGT	3 cut(s)	257, 449, 752
HpyCH4IV	ACGT	3 cut(s)	29, 84, 279
HpyCH4V	TGCA	6 cut(s)	131, 215, 243, 308, 336, 723
HpyF3I	CTNAG	5 cut(s)	75, 201, 435, 466, 769
HpySE526I	ACGT	3 cut(s)	29, 84, 279
Hsp92II	CATG	3 cut(s)	148, 566, 718
HspAI	GCGC	2 cut(s)	542, 579
Kzo9I	GATC	4 cut(s)	175, 341, 570, 636
LmnI	GCTCC	1 cut(s)	769
LpnPI	CCDG	7 cut(s)	175, 336, 379, 393, 544, 571, 692
Lsp1109I	GCAGC	2 cut(s)	143, 255
LweI	GCATC	1 cut(s)	293
MaeI	CTAG	3 cut(s)	120, 179, 347
MaeII	ACGT	3 cut(s)	29, 84, 279
MalI	GATC	4 cut(s)	177, 343, 572, 638
MboI	GATC	4 cut(s)	175, 341, 570, 636
MboII	GAAGA	1 cut(s)	632
MfeI	CAATTG	1 cut(s)	520
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	6 cut(s)	14, 274, 369, 520, 584, 673
MlyI	GAGTC	2 cut(s)	13, 440
MnlI	CCTC	6 cut(s)	196, 387, 487, 627, 654, 657
MseI	TTAA	4 cut(s)	26, 401, 456, 476
MspR9I	CCNGG	1 cut(s)	559
MunI	CAATTG	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	559
NdeII	GATC	4 cut(s)	175, 341, 570, 636
NlaIII	CATG	3 cut(s)	148, 566, 718
NlaIV	GGNNCC	1 cut(s)	775
NsbI	TGCGCA	2 cut(s)	543, 580
NspI	RCATGY	1 cut(s)	566
NspV	TTCGAA	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PfeI	GAWTC	4 cut(s)	57, 232, 416, 506
PkrI	GCNGC	2 cut(s)	133, 245
PleI	GAGTC	2 cut(s)	12, 439
PpsI	GAGTC	2 cut(s)	12, 439
Ppu21I	YACGTR	1 cut(s)	280
PsiI	TTATAA	1 cut(s)	53
Psp1406I	AACGTT	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	1 cut(s)	775
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	3 cut(s)	83, 670, 683
RsaNI	GTAC	3 cut(s)	82, 669, 682
SaqAI	TTAA	4 cut(s)	26, 401, 456, 476
SatI	GCNGC	2 cut(s)	132, 244
Sau3AI	GATC	4 cut(s)	175, 341, 570, 636
ScaI	AGTACT	1 cut(s)	683
SchI	GAGTC	2 cut(s)	13, 440
ScrFI	CCNGG	1 cut(s)	559
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	1 cut(s)	293
SfcI	CTRYAG	2 cut(s)	129, 256
SfuI	TTCGAA	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SphI	GCATGC	1 cut(s)	566
Sse9I	AATT	6 cut(s)	14, 274, 369, 520, 584, 673
SsiI	CCGC	1 cut(s)	566
SspMI	CTAG	3 cut(s)	120, 179, 347
StyD4I	CCNGG	1 cut(s)	557
TaaI	ACNGT	3 cut(s)	257, 449, 752
TaiI	ACGT	3 cut(s)	32, 87, 282
TaqI	TCGA	3 cut(s)	12, 64, 573
TasI	AATT	6 cut(s)	14, 274, 369, 520, 584, 673
TatI	WGTACW	2 cut(s)	668, 681
TfiI	GAWTC	4 cut(s)	57, 232, 416, 506
Tru1I	TTAA	4 cut(s)	26, 401, 456, 476
Tru9I	TTAA	4 cut(s)	26, 401, 456, 476
TscAI	CASTG	1 cut(s)	551
TseI	GCWGC	2 cut(s)	131, 243
TspDTI	ATGAA	6 cut(s)	240, 615, 621, 633, 731, 776
TspRI	CASTG	1 cut(s)	551
XapI	RAATTY	2 cut(s)	14, 584
XceI	RCATGY	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	3 cut(s)	120, 179, 347
ZrmI	AGTACT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.