Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

5092259 .. 5093861

Gene Structure 1603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGCACAAAGCTTCCGAGTCTCATAATGAGATTGTGAACAATGAAGATGATGCCATTTTCTCGGTTTCAGATGAGGGCATACTAACTCCTCCTCGAACCCCTCCTACTGTTAATAACTTCATCTATGAAGACGAAGAAGAAGAAGATGATGATCATGAGCCTACTCAGCCTAGGAGAAAGCGAAGAAGAATCGGAGATGGAGAATTTTCTCCAAATTTGGACACTTCCAATTCCAACAACGAGCCTGCTGCAACTTTTGTTTGTGAAATCTGTGCCGATGACAAGGCTTCCAACGAGTCGTTTGGCATCCAAAATTGCAGCCATTCATACTGTAGAGACTGCATAAAGAATTACGTAGCATCCAAGCTTCAAGAGAACATAACAAGCATCAGTTGCCCTGTCCCTGATTGCAAAGGGTCACTAGACCCCGAGTATTGTCGTCCAGTTCTTCCACCTCAAGTGGTTGAGAGGTGGGAAAGTGCTTTACGTGAGTCAACAATCATAGTGTCTCAGAGATTTTACTGTCCCTATAAGGACTGCTCGACAATGTTGGTTGAGGATGTGACACAGGTTGTGATGGAATCGGAGTGCCCTAATTGTAAGAGAATGTTCTGTGCACAATGTAAGGTTGCGTGGCACGCCGGGATCGGCTGCGAAGAGTTTCAGAAGCTGAATGAGAATGAGAGGGAGAAGGGGGATATCATGCTGAGGAACCTTGCTCGGAAGAATCGTTGGAGTAGATGTCCAAAGTGTATGTTCTATGTGGAAAAAACGTGTGGCTTCGATGAAGTACGGTGCAGGTGCGGAAATTGTTTCATCTACGCACCCGGACAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

281

Amino Acids

32.04

Weight (kDa)

4.89

Isoelectric Point (pI)

59.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	158 - 219	3.7e-10	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	792
Acc36I	ACCTGC	1 cut(s)	792
AciI	CCGC	1 cut(s)	807
AclWI	GGATC	1 cut(s)	656
AcsI	RAATTY	3 cut(s)	206, 217, 837
AfaI	GTAC	1 cut(s)	795
AflIII	ACRYGT	1 cut(s)	776
AgsI	TTSAA	1 cut(s)	374
AluBI	AGCT	3 cut(s)	14, 370, 673
AluI	AGCT	3 cut(s)	14, 370, 673
Alw21I	GWGCWC	2 cut(s)	9, 622
Alw26I	GTCTC	3 cut(s)	27, 333, 516
Alw44I	GTGCAC	1 cut(s)	618
AlwI	GGATC	1 cut(s)	656
AlwNI	CAGNNNCTG	1 cut(s)	673
Ama87I	CYCGRG	1 cut(s)	431
ApaLI	GTGCAC	1 cut(s)	618
ApeKI	GCWGC	3 cut(s)	251, 321, 654
ApoI	RAATTY	3 cut(s)	206, 217, 837
Asp700I	GAANNNNTTC	1 cut(s)	663
AspA2I	CCTAGG	1 cut(s)	173
AsuC2I	CCSGG	2 cut(s)	646, 831
AvaI	CYCGRG	1 cut(s)	431
AvrII	CCTAGG	1 cut(s)	173
BaeGI	GKGCMC	2 cut(s)	596, 622
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	9, 622
BbvCI	CCTCAGC	1 cut(s)	710
BbvI	GCAGC	3 cut(s)	238, 333, 641
BccI	CCATC	2 cut(s)	194, 574
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BclI	TGATCA	1 cut(s)	154
BcnI	CCSGG	2 cut(s)	646, 831
BcoDI	GTCTC	3 cut(s)	27, 333, 516
BfaI	CTAG	2 cut(s)	174, 425
BfmI	CTRYAG	1 cut(s)	334
BfuAI	ACCTGC	1 cut(s)	792
BisI	GCNGC	3 cut(s)	252, 322, 655
BlnI	CCTAGG	1 cut(s)	173
BlsI	GCNGC	3 cut(s)	253, 323, 656
Bme1390I	CCNGG	2 cut(s)	646, 831
BmeT110I	CYCGRG	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	716
BmrFI	CCNGG	2 cut(s)	646, 831
BmsI	GCATC	4 cut(s)	43, 318, 371, 399
BpiI	GAAGAC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	710
BpuEI	CTTGAG	1 cut(s)	444
BpuMI	CCSGG	2 cut(s)	646, 831
BsaAI	YACGTR	2 cut(s)	358, 491
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bse1I	ACTGG	1 cut(s)	446
Bse8I	GATNNNNATC	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	3 cut(s)	309, 362, 568
BseJI	GATNNNNATC	1 cut(s)	153
BseMII	CTCAG	3 cut(s)	182, 527, 701
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	2 cut(s)	81, 84
BseSI	GKGCMC	2 cut(s)	596, 622
BseXI	GCAGC	3 cut(s)	238, 333, 641
BsgI	GTGCAG	1 cut(s)	820
BsiHKAI	GWGCWC	2 cut(s)	9, 622
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	645, 831
BslFI	GGGAC	2 cut(s)	389, 513
BsmAI	GTCTC	3 cut(s)	27, 333, 516
BsmFI	GGGAC	2 cut(s)	389, 513
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	3 cut(s)	9, 596, 622
Bsp143I	GATC	2 cut(s)	154, 648
BspACI	CCGC	1 cut(s)	807
BspCNI	CTCAG	3 cut(s)	181, 526, 702
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	716
BspMI	ACCTGC	1 cut(s)	792
BspPI	GGATC	1 cut(s)	656
BsrI	ACTGG	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	154, 648
BssT1I	CCWWGG	1 cut(s)	173
Bst4CI	ACNGT	4 cut(s)	112, 335, 527, 798
Bst6I	CTCTTC	1 cut(s)	654
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstBAI	YACGTR	2 cut(s)	358, 491
BstC8I	GCNNGC	2 cut(s)	249, 642
BstDEI	CTNAG	3 cut(s)	168, 513, 710
BstF5I	GGATG	3 cut(s)	309, 362, 568
BstKTI	GATC	2 cut(s)	157, 651
BstMAI	GTCTC	3 cut(s)	27, 333, 516
BstMBI	GATC	2 cut(s)	154, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 396, 641
BstSCI	CCNGG	2 cut(s)	644, 829
BstSFI	CTRYAG	1 cut(s)	334
BstSLI	GKGCMC	2 cut(s)	596, 622
BstSNI	TACGTA	1 cut(s)	358
BstV1I	GCAGC	3 cut(s)	238, 333, 641
BstV2I	GAAGAC	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	309, 362, 568
BveI	ACCTGC	1 cut(s)	792
Cac8I	GCNNGC	2 cut(s)	249, 642
CaiI	CAGNNNCTG	1 cut(s)	673
CciI	TCATGA	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	794
CviAII	CATG	2 cut(s)	158, 706
CviQI	GTAC	1 cut(s)	794
DdeI	CTNAG	3 cut(s)	168, 513, 710
DpnI	GATC	2 cut(s)	156, 650
DpnII	GATC	2 cut(s)	154, 648
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Eco105I	TACGTA	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	703
Eco88I	CYCGRG	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	2 cut(s)	161, 709
FaqI	GGGAC	2 cut(s)	389, 513
FatI	CATG	2 cut(s)	157, 705
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	252, 322, 655
FokI	GGATG	3 cut(s)	296, 349, 575
Fsp4HI	GCNGC	3 cut(s)	252, 322, 655
FspBI	CTAG	2 cut(s)	174, 425
GluI	GCNGC	3 cut(s)	252, 322, 655
HapII	CCGG	2 cut(s)	645, 831
Hin1II	CATG	2 cut(s)	161, 709
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HindIII	AAGCTT	2 cut(s)	12, 368
HinfI	GANTC	6 cut(s)	20, 192, 299, 494, 584, 730
HpaII	CCGG	2 cut(s)	645, 831
Hpy166II	GTNNAC	3 cut(s)	40, 498, 620
Hpy188I	TCNGA	7 cut(s)	19, 73, 197, 516, 589, 669, 726
Hpy188III	TCNNGA	2 cut(s)	158, 374
Hpy8I	GTNNAC	3 cut(s)	40, 498, 620
HpyAV	CCTTC	1 cut(s)	688
HpyCH4III	ACNGT	4 cut(s)	112, 335, 527, 798
HpyCH4IV	ACGT	3 cut(s)	357, 490, 776
HpyCH4V	TGCA	6 cut(s)	254, 321, 345, 414, 620, 801
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 396, 641
HpyF3I	CTNAG	3 cut(s)	168, 513, 710
HpySE526I	ACGT	3 cut(s)	357, 490, 776
Hsp92II	CATG	2 cut(s)	161, 709
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	154, 648
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	261, 414, 420, 459, 557, 658, 787
Lsp1109I	GCAGC	3 cut(s)	238, 333, 641
LweI	GCATC	4 cut(s)	43, 318, 371, 399
MaeI	CTAG	2 cut(s)	174, 425
MaeII	ACGT	3 cut(s)	357, 490, 776
MaeIII	GTNAC	2 cut(s)	420, 565
MalI	GATC	2 cut(s)	156, 650
MboI	GATC	2 cut(s)	154, 648
MhlI	GDGCHC	3 cut(s)	9, 596, 622
MluCI	AATT	8 cut(s)	206, 217, 232, 316, 352, 598, 811, 837
MlyI	GAGTC	3 cut(s)	29, 308, 503
MmeI	TCCRAC	3 cut(s)	261, 318, 716
MnlI	CCTC	9 cut(s)	70, 102, 105, 114, 465, 468, 553, 681, 705
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	2 cut(s)	114, 841
MspI	CCGG	2 cut(s)	645, 831
MspR9I	CCNGG	2 cut(s)	646, 831
MwoI	GCNNNNNNNGC	3 cut(s)	169, 396, 641
NciI	CCSGG	2 cut(s)	646, 831
NdeII	GATC	2 cut(s)	154, 648
NlaIII	CATG	2 cut(s)	161, 709
NlaIV	GGNNCC	1 cut(s)	716
NmuCI	GTSAC	2 cut(s)	420, 565
PagI	TCATGA	1 cut(s)	157
PaqCI	CACCTGC	1 cut(s)	792
PcsI	WCGNNNNNNNCGW	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	3 cut(s)	192, 584, 730
PkrI	GCNGC	3 cut(s)	253, 323, 656
PleI	GAGTC	3 cut(s)	28, 307, 502
PpsI	GAGTC	3 cut(s)	28, 307, 502
Ppu21I	YACGTR	2 cut(s)	358, 491
PspN4I	GGNNCC	1 cut(s)	716
PsrI	GAACNNNNNNTAC	2 cut(s)	91, 123
PstNI	CAGNNNCTG	1 cut(s)	673
RsaI	GTAC	1 cut(s)	795
RsaNI	GTAC	1 cut(s)	794
SaqAI	TTAA	2 cut(s)	114, 841
SatI	GCNGC	3 cut(s)	252, 322, 655
Sau3AI	GATC	2 cut(s)	154, 648
SchI	GAGTC	3 cut(s)	29, 308, 503
ScrFI	CCNGG	2 cut(s)	646, 831
SduI	GDGCHC	3 cut(s)	9, 596, 622
SfaNI	GCATC	4 cut(s)	43, 318, 371, 399
SfcI	CTRYAG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	459
SmoI	CTYRAG	1 cut(s)	459
SnaBI	TACGTA	1 cut(s)	358
Sse9I	AATT	8 cut(s)	206, 217, 232, 316, 352, 598, 811, 837
SsiI	CCGC	1 cut(s)	807
SspMI	CTAG	2 cut(s)	174, 425
StyD4I	CCNGG	2 cut(s)	644, 829
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	4 cut(s)	112, 335, 527, 798
TaiI	ACGT	3 cut(s)	360, 493, 779
TaqI	TCGA	3 cut(s)	97, 545, 786
TasI	AATT	8 cut(s)	206, 217, 232, 316, 352, 598, 811, 837
TfiI	GAWTC	3 cut(s)	192, 584, 730
Tru1I	TTAA	2 cut(s)	114, 841
Tru9I	TTAA	2 cut(s)	114, 841
TseFI	GTSAC	2 cut(s)	420, 565
TseI	GCWGC	3 cut(s)	251, 321, 654
Tsp45I	GTSAC	2 cut(s)	420, 565
TspDTI	ATGAA	6 cut(s)	60, 112, 144, 318, 804, 808
VneI	GTGCAC	1 cut(s)	618
XapI	RAATTY	3 cut(s)	206, 217, 837
XmaJI	CCTAGG	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	2 cut(s)	174, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.