Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

8215361 .. 8220522

Gene Structure 5162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1102400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTCAAATACGTGGTCTCCAAGCTTCAAGATAACATTACCAGCATTAGGTGCCCTGTTCCGAATTGTATAGGGTTGCTGGAGCCGGAGTATTGCCGGCCGATTCTGCCTCCAGAGGTGTTTTATCGGCGGGGAAGTGCATTGTGTGAGGCCGTTATTCTTGGGTCAGAGAAATTTTACTGCCCCTATAAGGATTGCTCTGCAATGTTGATTGATGATGGGACAGAGGTTGTGAGGCAATCGGTGTGTCCGAATTGTTGGAGAATGTTCTGCGCTCAGTGTAAGGTTCCTTGGCATGAGGGGATCAAATGCGAGGAGTTTCTAAAGTTGAATAAGGATGAGAGGGAAAAGGAGGATATTGTTCTATGTGGAAAAATCGGGGGGTTGCACATGTTCATGAAGATGTACAGGTGCAGAACTGCTTTCTGCTATAGATGTGGAGACGTTTTAATGGACAATCATAACCACTACTGTCCCAGCTGTGAGGGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

165

Amino Acids

18.87

Weight (kDa)

6.85

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	56 - 104	2.8e-09	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	51
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	48, 190
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	2 cut(s)	29, 331
AluBI	AGCT	2 cut(s)	25, 480
AluI	AGCT	2 cut(s)	25, 480
Alw26I	GTCTC	2 cut(s)	22, 435
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	2 cut(s)	98, 150
ApoI	RAATTY	1 cut(s)	173
ArsI	GACNNNNNNTTYG	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	51
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	22, 435
BfmI	CTRYAG	1 cut(s)	430
BmiI	GGNNCC	3 cut(s)	53, 84, 288
BpmI	CTGGAG	2 cut(s)	96, 101
BsaAI	YACGTR	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	290
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 74, 104
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 190
Bse118I	RCCGGY	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	48, 190
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	56
BseX3I	CGGCCG	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	476
BsgI	GTGCAG	1 cut(s)	433
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	100, 152
BshNI	GGYRCC	1 cut(s)	51
BsiEI	CGRYCG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	86, 97
BslFI	GGGAC	2 cut(s)	235, 459
BslI	CCNNNNNNNGG	2 cut(s)	48, 190
BsmAI	GTCTC	2 cut(s)	22, 435
BsmBI	CGTCTC	1 cut(s)	435
BsmFI	GGGAC	2 cut(s)	235, 459
BsnI	GGCC	2 cut(s)	100, 152
Bso31I	GGTCTC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	2 cut(s)	100, 152
BspCNI	CTCAG	1 cut(s)	289
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	3 cut(s)	53, 84, 288
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	405
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	473
BstAPI	GCANNNNNTGC	1 cut(s)	51
BstAUI	TGTACA	1 cut(s)	405
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	1 cut(s)	306
BstMAI	GTCTC	2 cut(s)	22, 435
BstMBI	GATC	1 cut(s)	303
BstMCI	CGRYCG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 106
BstNSI	RCATGY	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	56
BstZI	CGGCCG	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	100, 152
BtsCI	GGATG	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	98
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	3 cut(s)	296, 391, 397
CviJI	RGCY	6 cut(s)	25, 85, 100, 152, 480, 492
CviKI_1	RGCY	6 cut(s)	25, 85, 100, 152, 480, 492
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	98
EagI	CGGCCG	1 cut(s)	98
EclXI	CGGCCG	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	22
Eco52I	CGGCCG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	3 cut(s)	299, 394, 400
FaiI	YATR	8 cut(s)	71, 189, 297, 367, 392, 398, 432, 462
FaqI	GGGAC	2 cut(s)	235, 459
FatI	CATG	3 cut(s)	295, 390, 396
FauI	CCCGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	274
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	2 cut(s)	96, 101
HaeIII	GGCC	2 cut(s)	100, 152
HapII	CCGG	2 cut(s)	86, 97
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	299, 394, 400
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	86, 97
Hpy188I	TCNGA	3 cut(s)	63, 169, 252
Hpy188III	TCNNGA	3 cut(s)	29, 113, 397
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	2 cut(s)	12, 444
HpyCH4V	TGCA	4 cut(s)	140, 203, 388, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 106
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	2 cut(s)	12, 444
Hsp92II	CATG	3 cut(s)	299, 394, 400
HspAI	GCGC	1 cut(s)	273
KroI	GCCGGC	1 cut(s)	96
KroNI	GCCGGC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	8 cut(s)	55, 65, 69, 99, 110, 126, 394, 490
MaeII	ACGT	2 cut(s)	12, 444
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	3 cut(s)	64, 173, 253
MmeI	TCCRAC	1 cut(s)	239
MroNI	GCCGGC	1 cut(s)	96
MseI	TTAA	1 cut(s)	449
MslI	CAYNNNNRTG	2 cut(s)	395, 401
MspA1I	CMGCKG	1 cut(s)	480
MspI	CCGG	2 cut(s)	86, 97
MwoI	GCNNNNNNNGC	2 cut(s)	51, 106
NaeI	GCCGGC	1 cut(s)	98
NdeII	GATC	1 cut(s)	303
NgoMIV	GCCGGC	1 cut(s)	96
NlaIII	CATG	3 cut(s)	299, 394, 400
NlaIV	GGNNCC	3 cut(s)	53, 84, 288
NspI	RCATGY	1 cut(s)	394
PagI	TCATGA	1 cut(s)	396
PciI	ACATGT	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PdiI	GCCGGC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	13
PscI	ACATGT	1 cut(s)	390
PspFI	CCCAGC	1 cut(s)	476
PspN4I	GGNNCC	3 cut(s)	53, 84, 288
PvuII	CAGCTG	1 cut(s)	480
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	2 cut(s)	395, 401
SaqAI	TTAA	1 cut(s)	449
Sau3AI	GATC	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	9 cut(s)	15, 27, 53, 120, 231, 288, 413, 447, 482
SfcI	CTRYAG	1 cut(s)	430
SmiMI	CAYNNNNRTG	2 cut(s)	395, 401
Sse9I	AATT	3 cut(s)	64, 173, 253
SsiI	CCGC	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	2 cut(s)	15, 447
TasI	AATT	3 cut(s)	64, 173, 253
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	385, 413
TspRI	CASTG	1 cut(s)	284
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.