Rh2AG103800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000271
Physical Location & Seq
Forward (+)
8946911 .. 8968038
21128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG103800.1

Sequence Viewer

Length: 327 bp
ATGACAAGCAAGAAAGCCAAAGTGGAGCACAAAGCTTCTGAGACTCATATTGAGATTGTGAACTATGAAGAGGATGCCCTTTTCTCCACAACAATTTCTCGTGCGGACATCGTTTCTGCTACAGTTGTGGAGGAGCCAAATGGCCCAAATCAGCCGAATGTGGTTGTGGACTTTACGGGCGGAGAAGGAGTAATTGTGACTAATTGTTCTTCTGCTCACTACTTGCACACTGCTGCTGTAACCGTTGCTTATACTCTCTCGGCTTCTCTTCTGGGTAAAGGCAGCATAAAATCAGCAGAGGGAGTTCTTCACAACCTCTGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.37

Weight (kDa)

5.4

Isoelectric Point (pI)

27.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 104, 180
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 35
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 233, 282
AspS9I GGNCC 1 cut(s) 143
BauI CACGAG 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 220, 294
BcoDI GTCTC 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 2 cut(s) 234, 283
BlsI GCNGC 2 cut(s) 235, 284
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 64
BsaXI ACNNNNNCTCC 4 cut(s) 174, 180, 204, 210
BseGI GGATG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 2 cut(s) 220, 294
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 30
BspACI CCGC 2 cut(s) 104, 180
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 124, 244
Bst6I CTCTTC 2 cut(s) 63, 273
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 220, 294
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 143
CviJI RGCY 6 cut(s) 17, 35, 136, 144, 154, 263
CviKI_1 RGCY 6 cut(s) 17, 35, 136, 144, 154, 263
DdeI CTNAG 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 63, 273
EarI CTCTTC 2 cut(s) 63, 273
EciI GGCGGA 1 cut(s) 195
FaiI YATR 4 cut(s) 48, 66, 252, 287
Fnu4HI GCNGC 2 cut(s) 234, 283
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 2 cut(s) 234, 283
GluI GCNGC 2 cut(s) 234, 283
HaeIII GGCC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 33
HinfI GANTC 1 cut(s) 43
Hpy166II GTNNAC 2 cut(s) 61, 169
Hpy188I TCNGA 1 cut(s) 40
Hpy8I GTNNAC 2 cut(s) 61, 169
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 124, 244
HpyCH4V TGCA 1 cut(s) 226
HpyF3I CTNAG 1 cut(s) 39
LmnI GCTCC 2 cut(s) 25, 133
LpnPI CCDG 1 cut(s) 257
Lsp1109I GCAGC 2 cut(s) 220, 294
LweI GCATC 1 cut(s) 64
MaeIII GTNAC 2 cut(s) 196, 238
MboII GAAGA 4 cut(s) 80, 201, 260, 299
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 3 cut(s) 93, 192, 202
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 4 cut(s) 64, 124, 292, 326
NlaIV GGNNCC 1 cut(s) 135
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 235, 284
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 143
SatI GCNGC 2 cut(s) 234, 283
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 37
SduI GDGCHC 1 cut(s) 30
SetI ASST 2 cut(s) 37, 318
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 120
SgeI CNNG 8 cut(s) 18, 22, 111, 113, 189, 235, 271, 284
Sse9I AATT 3 cut(s) 93, 192, 202
SsiI CCGC 2 cut(s) 104, 180
TaaI ACNGT 2 cut(s) 124, 244
TasI AATT 3 cut(s) 93, 192, 202
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 2 cut(s) 233, 282
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 81
TspRI CASTG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.