Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

4644942 .. 4651890

Gene Structure 6949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG061900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGGGACTGGCTATGATAATGCCACTTCTGAAGTTGCTACTCTGGAACATGCAAAGCTCAGAGCTAGGGTGGAGATTTTACAGAGAAATCAAAGTCATTTTATGGGGGAAGACCTCCAATCCTTGAGTATGAAAGAGCTTCAGAATTTGGAGCAGCTACTTGATTCTGCTCTGAAGCACATAAGGAGAGAGAGAAATCAAGTAACCATACCAAAAATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

74

Amino Acids

8.5

Weight (kDa)

6.83

Isoelectric Point (pI)

58.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	10 - 73	5.9e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	145, 216
AcuI	CTGAAG	3 cut(s)	51, 125, 194
AluBI	AGCT	4 cut(s)	58, 65, 139, 157
AluI	AGCT	4 cut(s)	58, 65, 139, 157
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	2 cut(s)	145, 216
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	66
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	117
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	5 cut(s)	12, 58, 65, 139, 157
CviKI_1	RGCY	5 cut(s)	12, 58, 65, 139, 157
DdeI	CTNAG	1 cut(s)	59
Eco57I	CTGAAG	3 cut(s)	51, 125, 194
FaeI	CATG	1 cut(s)	53
FaiI	YATR	6 cut(s)	15, 51, 104, 131, 182, 209
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	53
HinfI	GANTC	1 cut(s)	164
Hpy188I	TCNGA	4 cut(s)	31, 62, 144, 174
Hpy188III	TCNNGA	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	53
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	1 cut(s)	29
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	202
MboII	GAAGA	1 cut(s)	122
MluCI	AATT	2 cut(s)	145, 216
MnlI	CCTC	1 cut(s)	125
NlaIII	CATG	1 cut(s)	53
NspI	RCATGY	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	156
SatI	GCNGC	1 cut(s)	155
SetI	ASST	5 cut(s)	60, 67, 117, 141, 159
SgeI	CNNG	7 cut(s)	21, 56, 62, 78, 136, 173, 212
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	145, 216
SspMI	CTAG	1 cut(s)	66
TasI	AATT	2 cut(s)	145, 216
TfiI	GAWTC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	146
XapI	RAATTY	2 cut(s)	145, 216
XceI	RCATGY	1 cut(s)	53
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.