Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Reverse (-)

62966244 .. 62973626

Gene Structure 7383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGGAGGGGAAGGGTTCAGTTGAAGCGGATAGAGAACAAGATCAATAGGCAGGTGACTTTCTCGAAGAGAAGGTCTGGGCTGCTCAAGAAGGCGCATGAGATTTCTGTGCTCTGCGATGCTGAGGTCGCTTTGATAGTCTTCTCCACCAAAGGCAAGCTCTTCGAGTACTCGACTGATTCTTGCATGGAAAGAATCCTGGAAAGGTATGAAAGATACTCATATGCAGAGCGGCAGCTTCTTGGAAATAATCGCGATCACGACCACGATCAAGATCAATCAAATGGAAACTGGACTCTAGAACATGCAAAGCTCAAAGCTAGGGTGGAGGTCAAGGAGAAGGAGAAGGAGAAAGCAGTAGCCGACAGTGCCCCACAAGCACAGGCACAGGCACAATGGGAGCAACTGCAGAGGCACAGCTTGGACTCCTCCTCCAGCAGTGCCTTTCTACCTCAGGCTTTGCAGTCCTTGAATTTCAGAGGTTCATCTGGAGACTATGATCATGATGGAGAAACCCCACCTCCACCTCCGCCTCAACATCTAGCTGCCGCTGCTGCCAACAGTACTACGCTTCTGCCGCCTTGGATGCTCCGCCACCTTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

202

Amino Acids

22.92

Weight (kDa)

7.83

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	5.9e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	232
AccII	CGCG	1 cut(s)	255
AciI	CCGC	6 cut(s)	28, 232, 530, 549, 578, 592
AcsI	RAATTY	1 cut(s)	472
AfaI	GTAC	2 cut(s)	170, 565
AgsI	TTSAA	2 cut(s)	25, 472
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	6 cut(s)	160, 238, 313, 320, 420, 545
AluI	AGCT	6 cut(s)	160, 238, 313, 320, 420, 545
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	486
ApeKI	GCWGC	5 cut(s)	82, 235, 545, 551, 554
ApoI	RAATTY	1 cut(s)	472
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	453
BaeGI	GKGCMC	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	69, 247, 532, 538, 541
BccI	CCATC	1 cut(s)	500
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	3 cut(s)	299, 321, 542
BfmI	CTRYAG	1 cut(s)	407
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	8 cut(s)	83, 233, 236, 546, 549, 552, 555, 578
BlsI	GCNGC	8 cut(s)	84, 234, 237, 547, 550, 553, 556, 579
BmcAI	AGTACT	2 cut(s)	170, 565
Bme1390I	CCNGG	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	109, 576
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	2 cut(s)	418, 510
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	581
BsaXI	ACNNNNNCTCC	4 cut(s)	416, 446, 505, 535
Bse1I	ACTGG	1 cut(s)	296
Bse21I	CCTNAGG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	581
BseGI	GGATG	1 cut(s)	591
BseJI	GATNNNNATC	1 cut(s)	273
BseMII	CTCAG	2 cut(s)	114, 467
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	418, 421
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	5 cut(s)	69, 247, 532, 538, 541
Bsh1236I	CGCG	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	486
Bsp1286I	GDGCHC	2 cut(s)	114, 373
Bsp143I	GATC	5 cut(s)	42, 256, 268, 274, 499
Bsp68I	TCGCGA	1 cut(s)	255
BspACI	CCGC	6 cut(s)	28, 232, 530, 549, 578, 592
BspCNI	CTCAG	2 cut(s)	115, 466
BspFNI	CGCG	1 cut(s)	255
BspHI	TCATGA	1 cut(s)	502
BspMAI	CTGCAG	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	581
BssMI	GATC	5 cut(s)	42, 256, 268, 274, 499
BssT1I	CCWWGG	1 cut(s)	581
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	368, 563
Bst6I	CTCTTC	2 cut(s)	62, 167
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	123, 453
BstF5I	GGATG	1 cut(s)	591
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	5 cut(s)	45, 259, 271, 277, 502
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	5 cut(s)	42, 256, 268, 274, 499
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 368, 377, 551, 554, 577, 586
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	407
BstSLI	GKGCMC	1 cut(s)	373
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	5 cut(s)	69, 247, 532, 538, 541
BstV2I	GAAGAC	1 cut(s)	133
Bsu36I	CCTNAGG	1 cut(s)	453
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	591
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	373, 445
BtuMI	TCGCGA	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	158
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	169, 564
CviAII	CATG	4 cut(s)	98, 187, 305, 503
CviJI	RGCY	9 cut(s)	82, 160, 238, 313, 320, 362, 420, 458, 545
CviKI_1	RGCY	9 cut(s)	82, 160, 238, 313, 320, 362, 420, 458, 545
CviQI	GTAC	2 cut(s)	169, 564
DdeI	CTNAG	2 cut(s)	123, 453
DpnI	GATC	5 cut(s)	44, 258, 270, 276, 501
DpnII	GATC	5 cut(s)	42, 256, 268, 274, 499
Eam1104I	CTCTTC	2 cut(s)	62, 167
EarI	CTCTTC	2 cut(s)	62, 167
EciI	GGCGGA	2 cut(s)	519, 581
Eco130I	CCWWGG	1 cut(s)	581
Eco81I	CCTNAGG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	581
ErhI	CCWWGG	1 cut(s)	581
FaeI	CATG	4 cut(s)	101, 190, 308, 506
FaiI	YATR	8 cut(s)	99, 188, 210, 223, 225, 306, 498, 504
FatI	CATG	4 cut(s)	97, 186, 304, 502
FauNDI	CATATG	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	8 cut(s)	83, 233, 236, 546, 549, 552, 555, 578
FokI	GGATG	1 cut(s)	598
Fsp4HI	GCNGC	8 cut(s)	83, 233, 236, 546, 549, 552, 555, 578
FspBI	CTAG	3 cut(s)	299, 321, 542
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	8 cut(s)	83, 233, 236, 546, 549, 552, 555, 578
GsuI	CTGGAG	2 cut(s)	418, 510
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	4 cut(s)	101, 190, 308, 506
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	4 cut(s)	179, 195, 295, 425
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	479
Hpy188III	TCNNGA	8 cut(s)	64, 88, 254, 260, 272, 299, 489, 503
HpyAV	CCTTC	5 cut(s)	6, 66, 85, 334, 340
HpyCH4III	ACNGT	2 cut(s)	368, 563
HpyCH4V	TGCA	5 cut(s)	186, 227, 308, 409, 463
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 368, 377, 551, 554, 577, 586
HpyF3I	CTNAG	2 cut(s)	123, 453
Hsp92II	CATG	4 cut(s)	101, 190, 308, 506
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	5 cut(s)	42, 256, 268, 274, 499
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	400, 594
Lsp1109I	GCAGC	5 cut(s)	69, 247, 532, 538, 541
LweI	GCATC	2 cut(s)	109, 576
MaeI	CTAG	3 cut(s)	299, 321, 542
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	5 cut(s)	44, 258, 270, 276, 501
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	5 cut(s)	42, 256, 268, 274, 499
MboII	GAAGA	3 cut(s)	79, 133, 154
MhlI	GDGCHC	2 cut(s)	114, 373
MluCI	AATT	1 cut(s)	472
MlyI	GAGTC	2 cut(s)	289, 419
MseI	TTAA	1 cut(s)	600
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	7 cut(s)	128, 368, 377, 551, 554, 577, 586
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	5 cut(s)	42, 256, 268, 274, 499
NlaIII	CATG	4 cut(s)	101, 190, 308, 506
NmuCI	GTSAC	1 cut(s)	55
NruI	TCGCGA	1 cut(s)	255
NspI	RCATGY	1 cut(s)	308
PagI	TCATGA	1 cut(s)	502
PaqCI	CACCTGC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	179, 195
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	8 cut(s)	84, 234, 237, 547, 550, 553, 556, 579
PleI	GAGTC	2 cut(s)	289, 419
PpsI	GAGTC	2 cut(s)	289, 419
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	411
RruI	TCGCGA	1 cut(s)	255
RsaI	GTAC	2 cut(s)	170, 565
RsaNI	GTAC	2 cut(s)	169, 564
RseI	CAYNNNNRTG	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	8 cut(s)	83, 233, 236, 546, 549, 552, 555, 578
Sau3AI	GATC	5 cut(s)	42, 256, 268, 274, 499
ScaI	AGTACT	2 cut(s)	170, 565
SchI	GAGTC	2 cut(s)	289, 419
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	114, 373
SfaNI	GCATC	2 cut(s)	109, 576
SfcI	CTRYAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	472
SsiI	CCGC	6 cut(s)	28, 232, 530, 549, 578, 592
SspMI	CTAG	3 cut(s)	299, 321, 542
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	2 cut(s)	368, 563
TaqI	TCGA	3 cut(s)	65, 165, 173
TasI	AATT	1 cut(s)	472
TatI	WGTACW	2 cut(s)	168, 563
TauI	GCSGC	3 cut(s)	235, 551, 580
TfiI	GAWTC	2 cut(s)	179, 195
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	2 cut(s)	373, 445
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	5 cut(s)	82, 235, 545, 551, 554
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	225, 474
TspRI	CASTG	2 cut(s)	373, 445
XapI	RAATTY	1 cut(s)	472
XbaI	TCTAGA	1 cut(s)	298
XceI	RCATGY	1 cut(s)	308
XspI	CTAG	3 cut(s)	299, 321, 542
ZrmI	AGTACT	2 cut(s)	170, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.