Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Reverse (-)

95789038 .. 95793470

Gene Structure 4433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGCTCCAAATGCTTGATGGCATATCTGACAATTGACCAAGCGACCCAGAATGTCGATCTCTGCGGTATTGAGACATTGCGCAACAAAAGGGGCACTGTAATAGCCCTATTGAAATCAGAGAAGCTCATCGAGGAATTGCATTTGCCTGATCTAATAGTTGCTACCAAAGAGGAGGAAGGAGGATATCGTTTGATCGAGGGAATCCCGACTCTGGAACATGCAAAGCTCAAAGCTAGGGTGGAGGTTTTGCAGAGAAATCAATGTCAATTTATGGGGAAAGACATCCAATCCTTAAGTATGAAAGATCTTCAGAATTTGGAGCAGCAACTTGATTCTGCTGTGAAGCACGTGAGGTCTAGAAAGGTAATGATGCCGGAGCATCACCACGCCTCAATTTCAAGTGACAGCCCCTCAAATGAGAAAGATGTAGCAGACTATGAAGAAATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

151

Amino Acids

17.1

Weight (kDa)

5.68

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	73 - 124	2.8e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	83
AciI	CCGC	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	296
AcvI	CACGTG	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	214
AflII	CTTAAG	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	115, 402
AluBI	AGCT	4 cut(s)	6, 127, 229, 236
AluI	AGCT	4 cut(s)	6, 127, 229, 236
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	325
ApoI	RAATTY	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	377
BaeGI	GKGCMC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	2 cut(s)	237, 360
BfrI	CTTAAG	1 cut(s)	295
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
BmsI	GCATC	2 cut(s)	363, 391
BsaAI	YACGTR	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	8, 98
Bsp143I	GATC	4 cut(s)	58, 151, 195, 307
BspACI	CCGC	1 cut(s)	66
BspTI	CTTAAG	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	77
BssMI	GATC	4 cut(s)	58, 151, 195, 307
Bst4CI	ACNGT	1 cut(s)	100
BstAFI	CTTAAG	1 cut(s)	295
BstBAI	YACGTR	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	4 cut(s)	61, 154, 198, 310
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	4 cut(s)	58, 151, 195, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	224
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	96
CfoI	GCGC	1 cut(s)	84
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	6 cut(s)	6, 107, 127, 229, 236, 411
CviKI_1	RGCY	6 cut(s)	6, 107, 127, 229, 236, 411
DpnI	GATC	4 cut(s)	60, 153, 197, 309
DpnII	GATC	4 cut(s)	58, 151, 195, 307
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	296
Eco72I	CACGTG	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	1 cut(s)	224
FaiI	YATR	5 cut(s)	25, 222, 275, 302, 441
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	2 cut(s)	237, 360
FspI	TGCGCA	1 cut(s)	83
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	326
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	224
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	3 cut(s)	204, 211, 335
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	3 cut(s)	30, 121, 315
Hpy188III	TCNNGA	3 cut(s)	208, 215, 360
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	3 cut(s)	142, 224, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	224
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	58, 151, 195, 307
LmnI	GCTCC	3 cut(s)	11, 322, 379
LpnPI	CCDG	4 cut(s)	62, 162, 200, 390
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	363, 391
MaeI	CTAG	2 cut(s)	237, 360
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	4 cut(s)	60, 153, 197, 309
MboI	GATC	4 cut(s)	58, 151, 195, 307
MboII	GAAGA	2 cut(s)	302, 455
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	8, 98
MluCI	AATT	5 cut(s)	33, 137, 269, 316, 396
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	9 cut(s)	127, 166, 169, 176, 193, 238, 348, 403, 424
MseI	TTAA	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	295
MspI	CCGG	1 cut(s)	377
MunI	CAATTG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeII	GATC	4 cut(s)	58, 151, 195, 307
NlaIII	CATG	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	404
NsbI	TGCGCA	1 cut(s)	83
NspI	RCATGY	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	204, 335
PkrI	GCNGC	1 cut(s)	327
PleI	GAGTC	1 cut(s)	205
PmaCI	CACGTG	1 cut(s)	352
PmlI	CACGTG	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	8
PspCI	CACGTG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	4 cut(s)	58, 151, 195, 307
SchI	GAGTC	1 cut(s)	205
SduI	GDGCHC	2 cut(s)	8, 98
SetI	ASST	8 cut(s)	8, 129, 231, 238, 249, 354, 359, 369
SfaNI	GCATC	2 cut(s)	363, 391
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	5 cut(s)	33, 137, 269, 316, 396
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	2 cut(s)	237, 360
SstI	GAGCTC	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	3 cut(s)	57, 132, 198
TasI	AATT	5 cut(s)	33, 137, 269, 316, 396
TfiI	GAWTC	2 cut(s)	204, 335
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	317, 456
TspRI	CASTG	1 cut(s)	103
Vha464I	CTTAAG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	316
XbaI	TCTAGA	1 cut(s)	359
XceI	RCATGY	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XspI	CTAG	2 cut(s)	237, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.