Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

688321 .. 691465

Gene Structure 3145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG010200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGCCGGGCTGGCCCAGCCCTCAGAATAATGGCCCAATTTCGGTTTTACTGTGTAGTTGATAACTTCTGCATTTGTGGTGGTAGTAGTGACAATCATTTTATGGGGAAAGACCTCCAATCCTTAAGTATGAAAGATCTTCAGAATTTGAAGCAGCAACTTGATTCTGCTCTGAAGCACATGAGGTCTAGAAAGAATCAACTTATGTACCCATTCAGTGCTTCAGAAGAAGGTAATGATTCCGGAGCATCACCACTGCTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

88

Amino Acids

9.83

Weight (kDa)

7.74

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	31 - 70	2.4e-13	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	3 cut(s)	125, 194, 207
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	42
AflII	CTTAAG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	151
Aor13HI	TCCGGA	1 cut(s)	242
AoxI	GGCC	3 cut(s)	4, 13, 33
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	3 cut(s)	4, 14, 34
AsuC2I	CCSGG	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	243
BaeI	ACNNNNGTAYC	2 cut(s)	191, 224
BbvI	GCAGC	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	8
BfaI	CTAG	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	124
BglI	GCCNNNNNGGC	1 cut(s)	12
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	8
BmgT120I	GGNCC	3 cut(s)	4, 14, 34
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	16
BshFI	GGCC	3 cut(s)	6, 15, 35
BsiSI	CCGG	2 cut(s)	7, 243
BslI	CCNNNNNNNGG	1 cut(s)	42
BsnI	GGCC	3 cut(s)	6, 15, 35
Bsp13I	TCCGGA	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	136
BspANI	GGCC	3 cut(s)	6, 15, 35
BspCNI	CTCAG	1 cut(s)	36
BspEI	TCCGGA	1 cut(s)	242
BspTI	CTTAAG	1 cut(s)	124
BssMI	GATC	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	53
BstAFI	CTTAAG	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	23
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 17
BstSCI	CCNGG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	6, 15, 35
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	2 cut(s)	223, 254
Cac8I	GCNNGC	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	4, 14, 34
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	5 cut(s)	6, 11, 15, 20, 35
CviKI_1	RGCY	5 cut(s)	6, 11, 15, 20, 35
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eco57I	CTGAAG	3 cut(s)	125, 194, 207
FaeI	CATG	1 cut(s)	184
FaiI	YATR	4 cut(s)	104, 131, 182, 206
FatI	CATG	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	155
GsaI	CCCAGC	1 cut(s)	20
HaeIII	GGCC	3 cut(s)	6, 15, 35
HapII	CCGG	2 cut(s)	7, 243
Hin1II	CATG	1 cut(s)	184
HinfI	GANTC	3 cut(s)	164, 196, 239
HpaII	CCGG	2 cut(s)	7, 243
HphI	GGTGA	1 cut(s)	243
Hpy188I	TCNGA	4 cut(s)	26, 144, 174, 226
Hpy188III	TCNNGA	2 cut(s)	189, 243
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 17
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	184
Kpn2I	TCCGGA	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	4 cut(s)	20, 30, 245, 256
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	131, 239
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	2 cut(s)	38, 145
MnlI	CCTC	3 cut(s)	32, 125, 177
MroI	TCCGGA	1 cut(s)	242
MseI	TTAA	1 cut(s)	125
MspCI	CTTAAG	1 cut(s)	124
MspI	CCGG	2 cut(s)	7, 243
MspR9I	CCNGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	12, 17
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	89
PfeI	GAWTC	3 cut(s)	164, 196, 239
PkrI	GCNGC	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	16
PspPI	GGNCC	3 cut(s)	4, 14, 34
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	3 cut(s)	4, 14, 34
ScrFI	CCNGG	1 cut(s)	8
SetI	ASST	3 cut(s)	117, 188, 235
SfaNI	GCATC	1 cut(s)	257
SfiI	GGCCNNNNNGGCC	1 cut(s)	12
SgeI	CNNG	8 cut(s)	19, 20, 24, 29, 173, 193, 201, 255
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	38, 145
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	53
TasI	AATT	2 cut(s)	38, 145
TfiI	GAWTC	3 cut(s)	164, 196, 239
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	2 cut(s)	223, 261
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	223, 261
Vha464I	CTTAAG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	145
XbaI	TCTAGA	1 cut(s)	188
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.