Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

29951779 .. 29957808

Gene Structure 6030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1215700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGGAGGGGAAGGGTGCAGCTGAAGAGAATTGAGAACAAGATCAACAGGCAGGTGACCTTCTCAAAGAGAAGGTCGGGGCTGATGAAGAAAGCTCATGAGATTTCTGTGCTTTGTGATGCTGAGGTTGCTTTGATTATCTTCTCCACCAAGGGCAAGCTCTTTGAGTACTCCAATGATTCCTGCATGGAAAGGATCCTGGAAAGGTACGAAAGATACTCATATACAGAGAGGCAGCTTCTTGCAAATGATAATGAATCCACTGGAAGCTGGACTCTGGAACATGCAAAGCTCAAGGCTAGGGTGGAGGTTTTACAAAGAAATCAAAGACACTATATGGGAGAAGATCTCCAATCCTTAAGTCTCAAAGAGCTTCAAAATTTAGAGCAACAGCTTGATTCTGCACTGAAGCACATAAGGTCAAGAAAGAACCAAGTTATGTACGAATCGATTTCTGAGCTCCAGAAGAAGGATAAGGCATTGCAGGAGCAAAACAACTTGCTGGCAAAGAAGGTGAAGGAGAAGGAGAACGCAGTAGCTCAACAGGCCCAATTGGAGCATGTGCAGGAGCAGAGGTTGAACTCCTCTTCCTCCCTTCTTCCACGGGCATTGCAGTCCTTGAATTTCGGCAGCGGGTCCAATTACCAGGCCATTAGATCAAGTGAAGGAATACCAGGAGATAATCAGCAGTATGGAGATGAAACCCCAACTCCACATAGACCTAACATGCTGCTGCCCGCTTGGATGCTCCGCCACCTTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

256

Amino Acids

29.52

Weight (kDa)

9.31

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.3e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 172	1.2e-30	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	3 cut(s)	633, 738, 751
AclWI	GGATC	2 cut(s)	190, 203
AcsI	RAATTY	2 cut(s)	379, 622
AcuI	CTGAAG	2 cut(s)	44, 428
AfaI	GTAC	3 cut(s)	170, 209, 443
AfiI	CCNNNNNNNGG	1 cut(s)	469
AflII	CTTAAG	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	377, 580, 622
AjnI	CCWGG	3 cut(s)	198, 645, 673
AloI	GAACNNNNNNTCC	2 cut(s)	572, 604
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	2 cut(s)	190, 203
AoxI	GGCC	2 cut(s)	546, 648
ApeKI	GCWGC	5 cut(s)	19, 235, 630, 730, 733
ApoI	RAATTY	2 cut(s)	379, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspS9I	GGNCC	2 cut(s)	547, 636
AsuHPI	GGTGA	2 cut(s)	67, 526
AvaII	GGWCC	1 cut(s)	636
BamHI	GGATCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	462
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	31, 247, 642, 717, 720
BciT130I	CCWGG	3 cut(s)	200, 647, 675
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	5 cut(s)	20, 236, 631, 731, 734
BlsI	GCNGC	5 cut(s)	21, 237, 632, 732, 735
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	3 cut(s)	200, 647, 675
Bme18I	GGWCC	1 cut(s)	636
BmgT120I	GGNCC	2 cut(s)	547, 636
BmiI	GGNNCC	2 cut(s)	197, 637
BmrFI	CCNGG	3 cut(s)	200, 647, 675
BmsI	GCATC	2 cut(s)	109, 735
BplI	GAGNNNNNCTC	2 cut(s)	333, 365
BpmI	CTGGAG	1 cut(s)	446
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	150, 602
BsaXI	ACNNNNNCTCC	4 cut(s)	560, 590, 694, 724
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	2 cut(s)	479, 608
BseBI	CCWGG	3 cut(s)	200, 647, 675
BseCI	ATCGAT	1 cut(s)	449
BseDI	CCNNGG	2 cut(s)	150, 602
BseGI	GGATG	1 cut(s)	750
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMI	GCAATG	2 cut(s)	479, 608
BseMII	CTCAG	2 cut(s)	114, 447
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	574
BseXI	GCAGC	5 cut(s)	31, 247, 642, 717, 720
BsgI	GTGCAG	3 cut(s)	38, 387, 584
BshFI	GGCC	2 cut(s)	548, 650
BshVI	ATCGAT	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	548, 650
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	4 cut(s)	42, 195, 346, 656
BspACI	CCGC	3 cut(s)	633, 738, 751
BspANI	GGCC	2 cut(s)	548, 650
BspCNI	CTCAG	2 cut(s)	115, 448
BspDI	ATCGAT	1 cut(s)	449
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	197, 637
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	190, 203
BspTI	CTTAAG	1 cut(s)	358
BsrDI	GCAATG	2 cut(s)	479, 608
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	150, 602
BssMI	GATC	4 cut(s)	42, 195, 346, 656
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	3 cut(s)	200, 647, 675
Bst6I	CTCTTC	2 cut(s)	20, 592
BstAFI	CTTAAG	1 cut(s)	358
BstC8I	GCNNGC	3 cut(s)	158, 504, 738
BstDEI	CTNAG	2 cut(s)	123, 456
BstDSI	CCRYGG	1 cut(s)	602
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	750
BstKTI	GATC	4 cut(s)	45, 198, 349, 659
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	4 cut(s)	42, 195, 346, 656
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 545
BstNI	CCWGG	3 cut(s)	200, 647, 675
BstNSI	RCATGY	3 cut(s)	287, 563, 730
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	3 cut(s)	198, 645, 673
BstV1I	GCAGC	5 cut(s)	31, 247, 642, 717, 720
BstX2I	RGATCY	2 cut(s)	195, 346
BstYI	RGATCY	2 cut(s)	195, 346
Bsu15I	ATCGAT	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	548, 650
BsuTUI	ATCGAT	1 cut(s)	449
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	1 cut(s)	750
BtsIMutI	CAGTG	2 cut(s)	261, 404
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	158, 504, 738
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	547, 636
ClaI	ATCGAT	1 cut(s)	449
Csp6I	GTAC	3 cut(s)	169, 208, 442
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	5 cut(s)	98, 187, 284, 560, 727
CviQI	GTAC	3 cut(s)	169, 208, 442
DdeI	CTNAG	2 cut(s)	123, 456
DpnI	GATC	4 cut(s)	44, 197, 348, 658
DpnII	GATC	4 cut(s)	42, 195, 346, 656
Eam1104I	CTCTTC	2 cut(s)	20, 592
EarI	CTCTTC	2 cut(s)	20, 592
EciI	GGCGGA	1 cut(s)	740
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	636
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	44, 428
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	460
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	3 cut(s)	198, 645, 673
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	5 cut(s)	101, 190, 287, 563, 730
FatI	CATG	5 cut(s)	97, 186, 283, 559, 726
FauI	CCCGC	2 cut(s)	626, 745
Fnu4HI	GCNGC	5 cut(s)	20, 236, 631, 731, 734
FokI	GGATG	1 cut(s)	757
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	5 cut(s)	20, 236, 631, 731, 734
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	5 cut(s)	20, 236, 631, 731, 734
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	2 cut(s)	548, 650
Hin1II	CATG	5 cut(s)	101, 190, 287, 563, 730
HinfI	GANTC	5 cut(s)	179, 257, 274, 398, 446
HphI	GGTGA	2 cut(s)	67, 526
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	4 cut(s)	98, 278, 423, 463
HpyAV	CCTTC	9 cut(s)	6, 66, 70, 463, 505, 511, 517, 605, 659
HpyCH4V	TGCA	8 cut(s)	19, 186, 245, 287, 404, 484, 565, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 545
HpyF3I	CTNAG	2 cut(s)	123, 456
Hsp92II	CATG	5 cut(s)	101, 190, 287, 563, 730
Kzo9I	GATC	4 cut(s)	42, 195, 346, 656
LmnI	GCTCC	5 cut(s)	465, 487, 556, 568, 753
Lsp1109I	GCAGC	5 cut(s)	31, 247, 642, 717, 720
LweI	GCATC	2 cut(s)	109, 735
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	44, 197, 348, 658
MboI	GATC	4 cut(s)	42, 195, 346, 656
MboII	GAAGA	7 cut(s)	37, 100, 133, 356, 478, 579, 590
MfeI	CAATTG	1 cut(s)	551
MflI	RGATCY	2 cut(s)	195, 346
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	5 cut(s)	30, 379, 551, 622, 640
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	6 cut(s)	118, 225, 301, 567, 595, 601
MseI	TTAA	2 cut(s)	359, 759
MslI	CAYNNNNRTG	1 cut(s)	759
MspA1I	CMGCKG	2 cut(s)	22, 633
MspCI	CTTAAG	1 cut(s)	358
MspR9I	CCNGG	3 cut(s)	200, 647, 675
MunI	CAATTG	1 cut(s)	551
MvaI	CCWGG	3 cut(s)	200, 647, 675
MwoI	GCNNNNNNNGC	2 cut(s)	128, 545
NdeII	GATC	4 cut(s)	42, 195, 346, 656
NlaIII	CATG	5 cut(s)	101, 190, 287, 563, 730
NlaIV	GGNNCC	2 cut(s)	197, 637
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	3 cut(s)	287, 563, 730
PagI	TCATGA	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	4 cut(s)	179, 257, 398, 446
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	5 cut(s)	21, 237, 632, 732, 735
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	3 cut(s)	198, 645, 673
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	3 cut(s)	198, 645, 673
PspN4I	GGNNCC	2 cut(s)	197, 637
PspPI	GGNCC	2 cut(s)	547, 636
PsuI	RGATCY	2 cut(s)	195, 346
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	3 cut(s)	170, 209, 443
RsaNI	GTAC	3 cut(s)	169, 208, 442
RseI	CAYNNNNRTG	1 cut(s)	759
SacI	GAGCTC	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	359, 759
SatI	GCNGC	5 cut(s)	20, 236, 631, 731, 734
Sau3AI	GATC	4 cut(s)	42, 195, 346, 656
Sau96I	GGNCC	2 cut(s)	547, 636
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	3 cut(s)	200, 647, 675
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	2 cut(s)	109, 735
SinI	GGWCC	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	2 cut(s)	293, 358
SmoI	CTYRAG	2 cut(s)	293, 358
Sse9I	AATT	5 cut(s)	30, 379, 551, 622, 640
SsiI	CCGC	3 cut(s)	633, 738, 751
SspMI	CTAG	1 cut(s)	300
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	3 cut(s)	198, 645, 673
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	1 cut(s)	449
TasI	AATT	5 cut(s)	30, 379, 551, 622, 640
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	4 cut(s)	179, 257, 398, 446
Tru1I	TTAA	2 cut(s)	359, 759
Tru9I	TTAA	2 cut(s)	359, 759
TscAI	CASTG	2 cut(s)	268, 411
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	5 cut(s)	19, 235, 630, 730, 733
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	101, 270, 714
TspRI	CASTG	2 cut(s)	268, 411
Vha464I	CTTAAG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	636
XapI	RAATTY	2 cut(s)	379, 622
XceI	RCATGY	3 cut(s)	287, 563, 730
XspI	CTAG	1 cut(s)	300
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.