Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002561

Physical Location & Seq

Genomic Coordinates Reverse (-)

21252542 .. 21252988

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCGTCGAGGAATTTGAGAGGCGGCGGCGTTGGATCTTCGGCGGAGGAGTTGAAGAAGATCTTCAACAAGTTCGACAAGAACGGCGACGGGAAGATCTGCCGCGACGAGCTCAGGGAGATCTTCCGTGAGCTCGGCTCCGAAACGACGCCGGAGGAGGTCAAGACCATAATGGCCGAGTTCGACAAGGACGGCGACGGTCGCATTGACCTCGACGAGTTCGCCGAGATTCTCAACGGCGGATCCACCAAGGATCTCCGTGACGCCTTCGACCTCTACGACCTCGACAAGAACGGCCGCATCTCCGCGAGTGAACTGCACGAAGTTCTTAAGCGATTGGGCCAGAAGTGCTCGCTCAAGGACTGCGCCAAGATGATCGGCTCCGTCGACGCCGACGGCGATGGCCACGTCAACTTCGAGGAATTCAAGAAGATGATGAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009909 GO:0019222 GO:0031323 GO:0043167 GO:0043169 GO:0046872 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0065007 GO:0065008 GO:0080164 GO:2000026 GO:2000241 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

149

Amino Acids

16.54

Weight (kDa)

5.09

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	16 - 77	6e-20	EF-hand domain pair
EF-hand_1	PF00036	17 - 45	2.3e-09	EF hand domain
EF-hand_6	PF13405	17 - 46	1.5e-09	EF-hand domain
EF-hand_5	PF13202	18 - 41	4e-08	EF hand
EF-hand_8	PF13833	30 - 78	1.2e-09	EF-hand domain pair
EF-hand_1	PF00036	53 - 79	3.8e-08	EF hand domain
EF-hand_7	PF13499	84 - 147	3.8e-16	EF-hand domain pair
EF-hand_1	PF00036	85 - 113	4e-07	EF hand domain
EF-hand_6	PF13405	85 - 114	5.6e-08	EF-hand domain
EF-hand_5	PF13202	86 - 109	2.9e-06	EF hand
EF-hand_1	PF00036	122 - 148	2.4e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28870 FvH4_7g07200
rosa_chinensis	RchiOBHm_Chr1g0337231 RchiOBHm_Chr3g0493331 RchiOBHm_Chr6g0305841
rosa_laevigata	RLG00000022718 RLG00000029296 RLG00000029299 RLG00000029490 RLG00000033995
rosa_multiflora	Rmu_co8149994.1_g000001 Rmu_sc0000828.1_g000005 Rmu_sc0004469.1_g000017 Rmu_sc0006010.1_g000003 Rmu_sc0007874.1_g000001 Rmu_sc0017606.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314650 Rroxscaffold_4G00314700 Rroxscaffold_4G00317730 Rroxscaffold_6G00391630
rosa_rugosa	Rorug01G0128400 Rorug01G0132200.1 Rorug03G0260500 Rorug06G0344300.1
rosa_samantha	Rh1BG117500 Rh1BG121800 Rh1CG099300 Rh1CG107500 Rh1CG143900 Rh1DG106500 Rh1DG116300 Rh1DG160500 Rh3AG309600 Rh3CG342900 Rh3DG344700 Rh6AG456100 Rh6CG470100 Rh6DG456800
rosa_wichuraiana	Rw1G012520 Rw3G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	2 cut(s)	105, 308
AciI	CCGC	7 cut(s)	24, 27, 44, 103, 240, 298, 306
AclWI	GGATC	4 cut(s)	43, 237, 250, 261
AcoI	YGGCCR	3 cut(s)	174, 295, 403
AcsI	RAATTY	2 cut(s)	13, 422
AcyI	GRCGYC	3 cut(s)	149, 264, 390
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	3 cut(s)	55, 67, 427
AjiI	CACGTC	1 cut(s)	409
AluBI	AGCT	2 cut(s)	112, 133
AluI	AGCT	2 cut(s)	112, 133
Alw21I	GWGCWC	3 cut(s)	114, 135, 353
AlwI	GGATC	4 cut(s)	43, 237, 250, 261
AoxI	GGCC	4 cut(s)	174, 295, 340, 403
ApoI	RAATTY	2 cut(s)	13, 422
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	340
BalI	TGGCCA	1 cut(s)	405
BamHI	GGATCC	1 cut(s)	242
BanII	GRGCYC	2 cut(s)	114, 135
Bbv12I	GWGCWC	3 cut(s)	114, 135, 353
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	5 cut(s)	100, 208, 253, 310, 412
BcgI	CGANNNNNNTGC	4 cut(s)	193, 227, 298, 332
BfrI	CTTAAG	1 cut(s)	329
BglII	AGATCT	3 cut(s)	60, 96, 120
BisI	GCNGC	4 cut(s)	25, 28, 103, 298
BlsI	GCNGC	4 cut(s)	26, 29, 104, 299
BmgBI	CACGTC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	3 cut(s)	139, 244, 382
BmsI	GCATC	1 cut(s)	309
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	341
BsaHI	GRCGYC	3 cut(s)	149, 264, 390
BsaJI	CCNNGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	127
BseRI	GAGGAG	2 cut(s)	62, 170
BseX3I	CGGCCG	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	302
Bsh1236I	CGCG	2 cut(s)	105, 308
Bsh1285I	CGRYCG	2 cut(s)	202, 298
BshFI	GGCC	4 cut(s)	176, 297, 342, 405
BsiEI	CGRYCG	2 cut(s)	202, 298
BsiHKAI	GWGCWC	3 cut(s)	114, 135, 353
BsiSI	CCGG	1 cut(s)	152
BsnI	GGCC	4 cut(s)	176, 297, 342, 405
Bsp1286I	GDGCHC	3 cut(s)	114, 135, 353
Bsp143I	GATC	7 cut(s)	35, 60, 96, 120, 242, 253, 375
BspACI	CCGC	7 cut(s)	24, 27, 44, 103, 240, 298, 306
BspANI	GGCC	4 cut(s)	176, 297, 342, 405
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	2 cut(s)	105, 308
BspLI	GGNNCC	3 cut(s)	139, 244, 382
BspPI	GGATC	4 cut(s)	43, 237, 250, 261
BspTI	CTTAAG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	7 cut(s)	35, 60, 96, 120, 242, 253, 375
BssNI	GRCGYC	3 cut(s)	149, 264, 390
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	200
BstACI	GRCGYC	3 cut(s)	149, 264, 390
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	113
BstFNI	CGCG	2 cut(s)	105, 308
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	7 cut(s)	38, 63, 99, 123, 245, 256, 378
BstMBI	GATC	7 cut(s)	35, 60, 96, 120, 242, 253, 375
BstMCI	CGRYCG	2 cut(s)	202, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 348
BstUI	CGCG	2 cut(s)	105, 308
BstX2I	RGATCY	6 cut(s)	35, 60, 96, 120, 242, 253
BstYI	RGATCY	6 cut(s)	35, 60, 96, 120, 242, 253
BstZI	CGGCCG	1 cut(s)	295
BsuRI	GGCC	4 cut(s)	176, 297, 342, 405
BtgZI	GCGATG	1 cut(s)	414
BtrI	CACGTC	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	353
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	340
CseI	GACGC	3 cut(s)	157, 272, 398
CviJI	RGCY	8 cut(s)	112, 133, 138, 176, 297, 342, 381, 405
CviKI_1	RGCY	8 cut(s)	112, 133, 138, 176, 297, 342, 381, 405
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	7 cut(s)	37, 62, 98, 122, 244, 255, 377
DpnII	GATC	7 cut(s)	35, 60, 96, 120, 242, 253, 375
EaeI	YGGCCR	3 cut(s)	174, 295, 403
EagI	CGGCCG	1 cut(s)	295
EciI	GGCGGA	2 cut(s)	59, 255
Ecl136II	GAGCTC	2 cut(s)	112, 133
EclXI	CGGCCG	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	2 cut(s)	114, 135
Eco52I	CGGCCG	1 cut(s)	295
Eco53kI	GAGCTC	2 cut(s)	112, 133
EcoICRI	GAGCTC	2 cut(s)	112, 133
EcoRI	GAATTC	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	2 cut(s)	114, 135
ErhI	CCWWGG	1 cut(s)	249
FaiI	YATR	1 cut(s)	170
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	25, 28, 103, 298
FriOI	GRGCYC	2 cut(s)	114, 135
Fsp4HI	GCNGC	4 cut(s)	25, 28, 103, 298
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	4 cut(s)	25, 28, 103, 298
HaeIII	GGCC	4 cut(s)	176, 297, 342, 405
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	3 cut(s)	157, 272, 398
HhaI	GCGC	1 cut(s)	368
Hin1I	GRCGYC	3 cut(s)	149, 264, 390
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HincII	GTYRAC	2 cut(s)	388, 412
HindII	GTYRAC	2 cut(s)	388, 412
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	3 cut(s)	314, 388, 412
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	163, 427
Hpy8I	GTNNAC	3 cut(s)	314, 388, 412
Hpy99I	CGWCG	9 cut(s)	10, 92, 110, 151, 200, 218, 389, 392, 398
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 348
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	3 cut(s)	149, 264, 390
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	7 cut(s)	35, 60, 96, 120, 242, 253, 375
LmnI	GCTCC	2 cut(s)	143, 386
LpnPI	CCDG	3 cut(s)	100, 165, 356
LweI	GCATC	1 cut(s)	309
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	7 cut(s)	37, 62, 98, 122, 244, 255, 377
MboI	GATC	7 cut(s)	35, 60, 96, 120, 242, 253, 375
MboII	GAAGA	7 cut(s)	30, 55, 67, 70, 106, 115, 442
MflI	RGATCY	6 cut(s)	35, 60, 96, 120, 242, 253
MhlI	GDGCHC	3 cut(s)	114, 135, 353
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	2 cut(s)	13, 422
MluNI	TGGCCA	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	9 cut(s)	3, 14, 40, 148, 151, 221, 284, 293, 412
Mox20I	TGGCCA	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	405
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	152
MvnI	CGCG	2 cut(s)	105, 308
MwoI	GCNNNNNNNGC	2 cut(s)	201, 348
NdeII	GATC	7 cut(s)	35, 60, 96, 120, 242, 253, 375
NlaIV	GGNNCC	3 cut(s)	139, 244, 382
NmeAIII	GCCGAG	3 cut(s)	114, 202, 250
NmuCI	GTSAC	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	5 cut(s)	222, 276, 384, 396, 414
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	4 cut(s)	26, 29, 104, 299
Psp124BI	GAGCTC	2 cut(s)	114, 135
PspN4I	GGNNCC	3 cut(s)	139, 244, 382
PspPI	GGNCC	1 cut(s)	340
PsuI	RGATCY	6 cut(s)	35, 60, 96, 120, 242, 253
SacI	GAGCTC	2 cut(s)	114, 135
SalI	GTCGAC	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	4 cut(s)	25, 28, 103, 298
Sau3AI	GATC	7 cut(s)	35, 60, 96, 120, 242, 253, 375
Sau96I	GGNCC	1 cut(s)	340
SduI	GDGCHC	3 cut(s)	114, 135, 353
SetI	ASST	7 cut(s)	114, 135, 162, 213, 276, 285, 411
SfaNI	GCATC	1 cut(s)	309
SgrDI	CGTCGACG	1 cut(s)	386
SmlI	CTYRAG	2 cut(s)	329, 356
SmoI	CTYRAG	2 cut(s)	329, 356
Sse9I	AATT	2 cut(s)	13, 422
SsiI	CCGC	7 cut(s)	24, 27, 44, 103, 240, 298, 306
SstI	GAGCTC	2 cut(s)	114, 135
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	8 cut(s)	8, 75, 183, 213, 270, 285, 387, 417
TasI	AATT	2 cut(s)	13, 422
TauI	GCSGC	4 cut(s)	27, 30, 105, 300
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspGWI	ACGGA	3 cut(s)	116, 248, 373
Vha464I	CTTAAG	1 cut(s)	329
XapI	RAATTY	2 cut(s)	13, 422
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.