Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002561

Physical Location & Seq

Genomic Coordinates Reverse (-)

38727630 .. 38729923

Gene Structure 2294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG342900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCGTTGAAAGGCGGCGCTGGATCTTCGCGGGAGGAGCTGAAGAAGATCTTCGACAAGTTCGACAAGAACGGCGACGGCAGGATCTGCTGCGACGAGCTCCGGGCGATCTTCCGTGAGCTCGGCTCCGAAACGACGTCGGAGGAGGTCAGGACCATAATGGCCGAGTTCGACAAGGACGGCGACGGCCGCATTGACCTCGACGAGTTCGCCGAGGTTCTCAACGGCGGATCCACCAAGGATCTCCGCGACGCGTTTGACCTCTACGACCTCGACAAGAACGGCCGCATCTCCTCGAAGGAACTGCACGAGGTTCTCAAGCGATTGGGCCAGAAGTGCTCGCTCAAGGACTGCCAGAAGATGATCAGCTCCGTCGACGCCGACGGCGATGGCCACGTCAACTTCGAGGAATTCAAGAAGATGATGAAGAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009909 GO:0019222 GO:0031323 GO:0043167 GO:0043169 GO:0046872 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0065007 GO:0065008 GO:0080164 GO:2000026 GO:2000241 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

145

Amino Acids

16.32

Weight (kDa)

5.08

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	11 - 73	1.5e-19	EF-hand domain pair
EF-hand_1	PF00036	13 - 41	2.3e-08	EF hand domain
EF-hand_6	PF13405	13 - 42	7.4e-09	EF-hand domain
EF-hand_5	PF13202	14 - 36	2.8e-06	EF hand
EF-hand_9	PF14658	16 - 74	7.2e-06	EF-hand domain
EF-hand_8	PF13833	32 - 75	2.9e-08	EF-hand domain pair
EF-hand_1	PF00036	49 - 74	4.3e-08	EF hand domain
EF-hand_7	PF13499	80 - 143	2.3e-16	EF-hand domain pair
EF-hand_1	PF00036	81 - 109	4.3e-07	EF hand domain
EF-hand_6	PF13405	81 - 110	1e-07	EF-hand domain
EF-hand_5	PF13202	82 - 105	8.3e-06	EF hand
EF-hand_9	PF14658	85 - 143	1e-05	EF-hand domain
EF-hand_8	PF13833	108 - 144	3.5e-07	EF-hand domain pair
EF-hand_1	PF00036	117 - 144	8.7e-09	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28870 FvH4_7g07200
rosa_chinensis	RchiOBHm_Chr1g0337231 RchiOBHm_Chr3g0493331 RchiOBHm_Chr6g0305841
rosa_laevigata	RLG00000022718 RLG00000029296 RLG00000029299 RLG00000029490 RLG00000033995
rosa_multiflora	Rmu_co8149994.1_g000001 Rmu_sc0000828.1_g000005 Rmu_sc0004469.1_g000017 Rmu_sc0006010.1_g000003 Rmu_sc0007874.1_g000001 Rmu_sc0017606.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314650 Rroxscaffold_4G00314700 Rroxscaffold_4G00317730 Rroxscaffold_6G00391630
rosa_rugosa	Rorug01G0128400 Rorug01G0132200.1 Rorug03G0260500 Rorug06G0344300.1
rosa_samantha	Rh1BG117500 Rh1BG121800 Rh1CG099300 Rh1CG107500 Rh1CG143900 Rh1DG106500 Rh1DG116300 Rh1DG160500 Rh3AG309600 Rh3CG342900 Rh3DG344700 Rh6AG456100 Rh6CG470100 Rh6DG456800
rosa_wichuraiana	Rw1G012520 Rw3G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	3 cut(s)	31, 249, 254
AciI	CCGC	6 cut(s)	15, 31, 190, 228, 247, 286
AclWI	GGATC	5 cut(s)	31, 92, 225, 238, 249
AcoI	YGGCCR	4 cut(s)	162, 187, 283, 391
AcsI	RAATTY	1 cut(s)	410
AcuI	CTGAAG	1 cut(s)	62
AcyI	GRCGYC	2 cut(s)	137, 378
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	10, 415
AjiI	CACGTC	1 cut(s)	397
AluBI	AGCT	4 cut(s)	40, 100, 121, 369
AluI	AGCT	4 cut(s)	40, 100, 121, 369
Alw21I	GWGCWC	3 cut(s)	102, 123, 341
AlwI	GGATC	5 cut(s)	31, 92, 225, 238, 249
AlwNI	CAGNNNCTG	1 cut(s)	87
AoxI	GGCC	5 cut(s)	162, 187, 283, 328, 391
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	410
Asp700I	GAANNNNTTC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	153, 328
AsuC2I	CCSGG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	153
BalI	TGGCCA	1 cut(s)	393
BamHI	GGATCC	1 cut(s)	230
BanII	GRGCYC	2 cut(s)	102, 123
BauI	CACGAG	1 cut(s)	308
Bbv12I	GWGCWC	3 cut(s)	102, 123, 341
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	7 cut(s)	88, 94, 196, 202, 241, 298, 400
BcgI	CGANNNNNNTGC	4 cut(s)	181, 215, 286, 320
BclI	TGATCA	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	104
BfoI	RGCGCY	1 cut(s)	21
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	4 cut(s)	16, 91, 190, 286
BlsI	GCNGC	4 cut(s)	17, 92, 191, 287
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	2 cut(s)	153, 328
BmiI	GGNNCC	2 cut(s)	127, 232
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	297
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpuEI	CTTGAG	2 cut(s)	302, 329
BpuMI	CCSGG	1 cut(s)	104
BsaHI	GRCGYC	2 cut(s)	137, 378
BsaJI	CCNNGG	2 cut(s)	213, 237
BseDI	CCNNGG	2 cut(s)	213, 237
BseRI	GAGGAG	3 cut(s)	50, 158, 283
BseX3I	CGGCCG	2 cut(s)	187, 283
BseXI	GCAGC	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	290
Bsh1236I	CGCG	3 cut(s)	31, 249, 254
Bsh1285I	CGRYCG	2 cut(s)	190, 286
BshFI	GGCC	5 cut(s)	164, 189, 285, 330, 393
BsiEI	CGRYCG	2 cut(s)	190, 286
BsiHKAI	GWGCWC	3 cut(s)	102, 123, 341
BsiSI	CCGG	1 cut(s)	103
BsnI	GGCC	5 cut(s)	164, 189, 285, 330, 393
Bsp1286I	GDGCHC	3 cut(s)	102, 123, 341
Bsp143I	GATC	7 cut(s)	23, 48, 84, 108, 230, 241, 363
BspACI	CCGC	6 cut(s)	15, 31, 190, 228, 247, 286
BspANI	GGCC	5 cut(s)	164, 189, 285, 330, 393
BspFNI	CGCG	3 cut(s)	31, 249, 254
BspLI	GGNNCC	2 cut(s)	127, 232
BspPI	GGATC	5 cut(s)	31, 92, 225, 238, 249
BssECI	CCNNGG	2 cut(s)	213, 237
BssMI	GATC	7 cut(s)	23, 48, 84, 108, 230, 241, 363
BssNI	GRCGYC	2 cut(s)	137, 378
BssSI	CACGAG	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	308
BstACI	GRCGYC	2 cut(s)	137, 378
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	341
BstFNI	CGCG	3 cut(s)	31, 249, 254
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	7 cut(s)	26, 51, 87, 111, 233, 244, 366
BstMBI	GATC	7 cut(s)	23, 48, 84, 108, 230, 241, 363
BstMCI	CGRYCG	2 cut(s)	190, 286
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 87, 189, 336
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	3 cut(s)	31, 249, 254
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	5 cut(s)	23, 48, 84, 230, 241
BstYI	RGATCY	5 cut(s)	23, 48, 84, 230, 241
BstZI	CGGCCG	2 cut(s)	187, 283
BsuRI	GGCC	5 cut(s)	164, 189, 285, 330, 393
BtgZI	GCGATG	1 cut(s)	402
BtrI	CACGTC	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	341
CaiI	CAGNNNCTG	1 cut(s)	87
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	153, 328
CseI	GACGC	2 cut(s)	260, 386
DpnI	GATC	7 cut(s)	25, 50, 86, 110, 232, 243, 365
DpnII	GATC	7 cut(s)	23, 48, 84, 108, 230, 241, 363
EaeI	YGGCCR	4 cut(s)	162, 187, 283, 391
EagI	CGGCCG	2 cut(s)	187, 283
EciI	GGCGGA	1 cut(s)	243
Ecl136II	GAGCTC	2 cut(s)	100, 121
EclXI	CGGCCG	2 cut(s)	187, 283
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	2 cut(s)	102, 123
Eco47I	GGWCC	1 cut(s)	153
Eco52I	CGGCCG	2 cut(s)	187, 283
Eco53kI	GAGCTC	2 cut(s)	100, 121
Eco57I	CTGAAG	1 cut(s)	62
EcoICRI	GAGCTC	2 cut(s)	100, 121
EcoRI	GAATTC	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	2 cut(s)	102, 123
ErhI	CCWWGG	1 cut(s)	237
FaiI	YATR	1 cut(s)	158
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FauI	CCCGC	1 cut(s)	24
FbaI	TGATCA	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	4 cut(s)	16, 91, 190, 286
FriOI	GRGCYC	2 cut(s)	102, 123
Fsp4HI	GCNGC	4 cut(s)	16, 91, 190, 286
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	4 cut(s)	16, 91, 190, 286
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	5 cut(s)	164, 189, 285, 330, 393
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	2 cut(s)	260, 386
HhaI	GCGC	1 cut(s)	20
Hin1I	GRCGYC	2 cut(s)	137, 378
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	2 cut(s)	376, 400
HindII	GTYRAC	2 cut(s)	376, 400
HpaII	CCGG	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	376, 400
Hpy188I	TCNGA	2 cut(s)	130, 142
Hpy188III	TCNNGA	2 cut(s)	151, 415
Hpy8I	GTNNAC	2 cut(s)	376, 400
HpyAV	CCTTC	1 cut(s)	292
HpyCH4IV	ACGT	2 cut(s)	137, 396
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 87, 189, 336
HpySE526I	ACGT	2 cut(s)	137, 396
Hsp92I	GRCGYC	2 cut(s)	137, 378
HspAI	GCGC	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	7 cut(s)	23, 48, 84, 108, 230, 241, 363
LmnI	GCTCC	4 cut(s)	37, 105, 131, 374
LpnPI	CCDG	6 cut(s)	6, 67, 116, 136, 344, 368
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	297
MaeII	ACGT	2 cut(s)	137, 396
MalI	GATC	7 cut(s)	25, 50, 86, 110, 232, 243, 365
MboI	GATC	7 cut(s)	23, 48, 84, 108, 230, 241, 363
MboII	GAAGA	7 cut(s)	18, 43, 55, 58, 103, 370, 430
MflI	RGATCY	5 cut(s)	23, 48, 84, 230, 241
MhlI	GDGCHC	3 cut(s)	102, 123, 341
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	1 cut(s)	410
MluI	ACGCGT	1 cut(s)	252
MluNI	TGGCCA	1 cut(s)	393
MmeI	TCCRAC	1 cut(s)	120
Mox20I	TGGCCA	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	104
MvnI	CGCG	3 cut(s)	31, 249, 254
MwoI	GCNNNNNNNGC	4 cut(s)	37, 87, 189, 336
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	7 cut(s)	23, 48, 84, 108, 230, 241, 363
NlaIV	GGNNCC	2 cut(s)	127, 232
NmeAIII	GCCGAG	3 cut(s)	102, 190, 238
PcsI	WCGNNNNNNNCGW	4 cut(s)	60, 210, 384, 402
PdmI	GAANNNNTTC	1 cut(s)	50
PkrI	GCNGC	4 cut(s)	17, 92, 191, 287
Psp124BI	GAGCTC	2 cut(s)	102, 123
PspN4I	GGNNCC	2 cut(s)	127, 232
PspPI	GGNCC	2 cut(s)	153, 328
PstNI	CAGNNNCTG	1 cut(s)	87
PsuI	RGATCY	5 cut(s)	23, 48, 84, 230, 241
SacI	GAGCTC	2 cut(s)	102, 123
SalI	GTCGAC	1 cut(s)	374
SatI	GCNGC	4 cut(s)	16, 91, 190, 286
Sau3AI	GATC	7 cut(s)	23, 48, 84, 108, 230, 241, 363
Sau96I	GGNCC	2 cut(s)	153, 328
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	3 cut(s)	102, 123, 341
SfaNI	GCATC	1 cut(s)	297
SgrDI	CGTCGACG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	153
SmlI	CTYRAG	2 cut(s)	317, 344
SmoI	CTYRAG	2 cut(s)	317, 344
Sse9I	AATT	1 cut(s)	410
SsiI	CCGC	6 cut(s)	15, 31, 190, 228, 247, 286
SstI	GAGCTC	2 cut(s)	102, 123
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	237
TaiI	ACGT	2 cut(s)	140, 399
TaqI	TCGA	8 cut(s)	54, 63, 171, 201, 273, 296, 375, 405
TasI	AATT	1 cut(s)	410
TauI	GCSGC	3 cut(s)	18, 192, 288
TseI	GCWGC	1 cut(s)	90
TspGWI	ACGGA	2 cut(s)	104, 361
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	375
XmnI	GAANNNNTTC	1 cut(s)	50
ZraI	GACGTC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.