Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002561

Physical Location & Seq

Genomic Coordinates Reverse (-)

7156091 .. 7156691

Gene Structure 601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCATCGAGTTTCAACAGTAGTTCAAGCAGCGGCAGCGGCGTGGTGGTATCTATGGAAGAGATCAAGAAGGTCTTCAACAAGTTCGACGAGAACAGTGACGGACTCATCTCCGGCGATGAGCTCAAGAGCGTTTTCCTTGCGCTGGGTTGGGAGATGAAGCCGGAGGAAGTGAAGACTGTGATGTCGGAGTTCGACAAGGACGGCGACGGCCACATCGACCTGGAGGAGTTCACGGCGATCCTCAATGGATCCCCGTCAACCAAGGATCTCCGTGACGCCTTCAATCTCTATGATCTCGATAAGAACGGGCTGATCTCGACCAGCGAGCTTCATGAGGTGCTAAACCGCTTAGGGCAGAAGTGCTCCGTCCTGGAATGTGCCGCCATGATTACCAATTTTGACGTCGATGGTGATGGCTTCATTAACTTTCAAGAGTTTAAGAAGATGATGAACCGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009909 GO:0019222 GO:0031323 GO:0043167 GO:0043169 GO:0046872 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0065007 GO:0065008 GO:0080164 GO:2000026 GO:2000241 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

155

Amino Acids

17.06

Weight (kDa)

4.45

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	20 - 80	1.3e-15	EF-hand domain pair
EF-hand_1	PF00036	21 - 46	3.8e-06	EF hand domain
EF-hand_6	PF13405	21 - 50	3.6e-06	EF-hand domain
EF-hand_8	PF13833	33 - 79	3.5e-08	EF-hand domain pair
EF-hand_1	PF00036	57 - 83	4e-08	EF hand domain
EF-hand_7	PF13499	89 - 151	4.1e-15	EF-hand domain pair
EF-hand_1	PF00036	90 - 117	2.6e-06	EF hand domain
EF-hand_6	PF13405	90 - 119	4.9e-07	EF-hand domain
EF-hand_8	PF13833	118 - 153	2.4e-06	EF-hand domain pair
EF-hand_1	PF00036	127 - 153	1.4e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28870 FvH4_7g07200
rosa_chinensis	RchiOBHm_Chr1g0337231 RchiOBHm_Chr3g0493331 RchiOBHm_Chr6g0305841
rosa_laevigata	RLG00000022718 RLG00000029296 RLG00000029299 RLG00000029490 RLG00000033995
rosa_multiflora	Rmu_co8149994.1_g000001 Rmu_sc0000828.1_g000005 Rmu_sc0004469.1_g000017 Rmu_sc0006010.1_g000003 Rmu_sc0007874.1_g000001 Rmu_sc0017606.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314650 Rroxscaffold_4G00314700 Rroxscaffold_4G00317730 Rroxscaffold_6G00391630
rosa_rugosa	Rorug01G0128400 Rorug01G0132200.1 Rorug03G0260500 Rorug06G0344300.1
rosa_samantha	Rh1BG117500 Rh1BG121800 Rh1CG099300 Rh1CG107500 Rh1CG143900 Rh1DG106500 Rh1DG116300 Rh1DG160500 Rh3AG309600 Rh3CG342900 Rh3DG344700 Rh6AG456100 Rh6CG470100 Rh6DG456800
rosa_wichuraiana	Rw1G012520 Rw3G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	184
AatII	GACGTC	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	459
AciI	CCGC	5 cut(s)	33, 39, 349, 384, 457
AclWI	GGATC	4 cut(s)	235, 246, 259, 276
AcoI	YGGCCR	1 cut(s)	211
AcyI	GRCGYC	2 cut(s)	279, 405
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	5 cut(s)	16, 27, 79, 286, 434
AjnI	CCWGG	2 cut(s)	222, 372
AluBI	AGCT	2 cut(s)	124, 331
AluI	AGCT	2 cut(s)	124, 331
Alw21I	GWGCWC	2 cut(s)	126, 368
AlwI	GGATC	4 cut(s)	235, 246, 259, 276
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	30, 36
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	2 cut(s)	67, 182
Bbv12I	GWGCWC	2 cut(s)	126, 368
BbvI	GCAGC	2 cut(s)	42, 48
BccI	CCATC	2 cut(s)	404, 410
BceAI	ACGGC	3 cut(s)	220, 226, 252
BciT130I	CCWGG	2 cut(s)	224, 374
BisI	GCNGC	5 cut(s)	31, 34, 37, 40, 384
BlsI	GCNGC	5 cut(s)	32, 35, 38, 41, 385
Bme1390I	CCNGG	2 cut(s)	224, 374
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	2 cut(s)	224, 374
BpiI	GAAGAC	2 cut(s)	67, 182
BpmI	CTGGAG	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	110
BsaHI	GRCGYC	2 cut(s)	279, 405
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
BseBI	CCWGG	2 cut(s)	224, 374
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	42, 48
BseYI	CCCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	2 cut(s)	126, 368
BsiSI	CCGG	2 cut(s)	114, 164
BslI	CCNNNNNNNGG	1 cut(s)	145
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	126, 368
Bsp143I	GATC	6 cut(s)	63, 240, 251, 268, 295, 315
BspACI	CCGC	5 cut(s)	33, 39, 349, 384, 457
BspANI	GGCC	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	4 cut(s)	235, 246, 259, 276
BsrBI	CCGCTC	1 cut(s)	459
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	6 cut(s)	63, 240, 251, 268, 295, 315
BssNI	GRCGYC	2 cut(s)	279, 405
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	224, 374
Bst4CI	ACNGT	3 cut(s)	20, 98, 181
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	2 cut(s)	279, 405
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	6 cut(s)	66, 243, 254, 271, 298, 318
BstMBI	GATC	6 cut(s)	63, 240, 251, 268, 295, 315
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 39
BstNI	CCWGG	2 cut(s)	224, 374
BstSCI	CCNGG	2 cut(s)	222, 372
BstV1I	GCAGC	2 cut(s)	42, 48
BstV2I	GAAGAC	2 cut(s)	67, 182
BstX2I	RGATCY	2 cut(s)	251, 268
BstYI	RGATCY	2 cut(s)	251, 268
BsuRI	GGCC	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	329
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	145
CseI	GACGC	1 cut(s)	287
CviAII	CATG	2 cut(s)	335, 388
CviJI	RGCY	6 cut(s)	124, 163, 213, 313, 331, 420
CviKI_1	RGCY	6 cut(s)	124, 163, 213, 313, 331, 420
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	6 cut(s)	65, 242, 253, 270, 297, 317
DpnII	GATC	6 cut(s)	63, 240, 251, 268, 295, 315
DrdI	GACNNNNNNGTC	1 cut(s)	184
DseDI	GACNNNNNNGTC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	222, 372
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	2 cut(s)	338, 391
FaiI	YATR	4 cut(s)	56, 294, 336, 389
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	2 cut(s)	334, 387
Fnu4HI	GCNGC	5 cut(s)	31, 34, 37, 40, 384
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	5 cut(s)	31, 34, 37, 40, 384
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	5 cut(s)	31, 34, 37, 40, 384
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	114, 164
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	2 cut(s)	279, 405
Hin1II	CATG	2 cut(s)	338, 391
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	1 cut(s)	105
HpaII	CCGG	2 cut(s)	114, 164
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	234, 261
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	7 cut(s)	67, 127, 299, 319, 335, 434, 462
Hpy8I	GTNNAC	2 cut(s)	234, 261
Hpy99I	CGWCG	3 cut(s)	92, 212, 410
HpyAV	CCTTC	2 cut(s)	64, 292
HpyCH4III	ACNGT	3 cut(s)	20, 98, 181
HpyCH4IV	ACGT	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 39
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	405
Hsp92I	GRCGYC	2 cut(s)	279, 405
Hsp92II	CATG	2 cut(s)	338, 391
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	6 cut(s)	63, 240, 251, 268, 295, 315
LmnI	GCTCC	1 cut(s)	371
LpnPI	CCDG	8 cut(s)	127, 131, 177, 209, 236, 337, 359, 386
Lsp1109I	GCAGC	2 cut(s)	42, 48
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	98, 275
MalI	GATC	6 cut(s)	65, 242, 253, 270, 297, 317
MbiI	CCGCTC	1 cut(s)	459
MboI	GATC	6 cut(s)	63, 240, 251, 268, 295, 315
MboII	GAAGA	4 cut(s)	67, 71, 187, 457
MflI	RGATCY	2 cut(s)	251, 268
MhlI	GDGCHC	2 cut(s)	126, 368
MluCI	AATT	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	4 cut(s)	160, 220, 254, 331
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	2 cut(s)	426, 441
MspA1I	CMGCKG	2 cut(s)	33, 39
MspI	CCGG	2 cut(s)	114, 164
MspR9I	CCNGG	2 cut(s)	224, 374
MvaI	CCWGG	2 cut(s)	224, 374
MwoI	GCNNNNNNNGC	2 cut(s)	36, 39
NdeII	GATC	6 cut(s)	63, 240, 251, 268, 295, 315
NlaIII	CATG	2 cut(s)	338, 391
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	2 cut(s)	98, 275
PagI	TCATGA	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	372
PkrI	GCNGC	5 cut(s)	32, 35, 38, 41, 385
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	2 cut(s)	222, 372
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	2 cut(s)	222, 372
PspN4I	GGNNCC	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	251, 268
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	426, 441
SatI	GCNGC	5 cut(s)	31, 34, 37, 40, 384
Sau3AI	GATC	6 cut(s)	63, 240, 251, 268, 295, 315
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	224, 374
SduI	GDGCHC	2 cut(s)	126, 368
SetI	ASST	6 cut(s)	75, 126, 225, 333, 342, 408
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	5 cut(s)	33, 39, 349, 384, 457
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	222, 372
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	20, 98, 181
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	7 cut(s)	8, 87, 195, 219, 300, 320, 408
TasI	AATT	1 cut(s)	397
TauI	GCSGC	3 cut(s)	36, 42, 386
Tru1I	TTAA	2 cut(s)	426, 441
Tru9I	TTAA	2 cut(s)	426, 441
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	2 cut(s)	98, 275
TseI	GCWGC	2 cut(s)	30, 36
Tsp45I	GTSAC	2 cut(s)	98, 275
TspDTI	ATGAA	3 cut(s)	173, 323, 412
TspGWI	ACGGA	3 cut(s)	117, 263, 358
TspRI	CASTG	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.