Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002561

Physical Location & Seq

Genomic Coordinates Forward (+)

35165359 .. 35166136

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCCATTAGAGAGCTCAAGCGTAGCCAGCGCACCGCCGAGTTATGCGTCCTCACCTACTTACAGTTCAAGCCTCACCTGCTCTTTGCCCATATTACCAAATCAAATTTTTGACTATGGGTTTCAAATCTATCTTCTCCCGGAAGAAGAAATCCACTCCCTCCAGCGCCGGTGCAGCTCAGCCGGCGGTGATGTGGTCAACACGCAGGCTCAGATCGCCGAGCTAGAGCAAGTCTTCAAGAAATTCGACGTCAACGGCAACGGCAAGATCTCGTCATCGGAGCTCGGAGCCATCATGGACAGCCTGGGCCACCCGGCGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0040007 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

108

Amino Acids

11.42

Weight (kDa)

4.56

Isoelectric Point (pI)

67.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	74 - 103	3.7e-08	EF-hand domain
EF-hand_1	PF00036	74 - 101	6.5e-08	EF hand domain
EF-hand_5	PF13202	75 - 99	2.3e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28870 FvH4_7g07200
rosa_chinensis	RchiOBHm_Chr1g0337231 RchiOBHm_Chr3g0493331 RchiOBHm_Chr6g0305841
rosa_laevigata	RLG00000022718 RLG00000029296 RLG00000029299 RLG00000029490 RLG00000033995
rosa_multiflora	Rmu_co8149994.1_g000001 Rmu_sc0000828.1_g000005 Rmu_sc0004469.1_g000017 Rmu_sc0006010.1_g000003 Rmu_sc0007874.1_g000001 Rmu_sc0017606.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314650 Rroxscaffold_4G00314700 Rroxscaffold_4G00317730 Rroxscaffold_6G00391630
rosa_rugosa	Rorug01G0128400 Rorug01G0132200.1 Rorug03G0260500 Rorug06G0344300.1
rosa_samantha	Rh1BG117500 Rh1BG121800 Rh1CG099300 Rh1CG107500 Rh1CG143900 Rh1DG106500 Rh1DG116300 Rh1DG160500 Rh3AG309600 Rh3CG342900 Rh3DG344700 Rh6AG456100 Rh6CG470100 Rh6DG456800
rosa_wichuraiana	Rw1G012520 Rw3G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
AatII	GACGTC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	86
AciI	CCGC	2 cut(s)	35, 186
AcsI	RAATTY	2 cut(s)	105, 242
AcyI	GRCGYC	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	69, 125, 238
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	4 cut(s)	15, 177, 223, 283
AluI	AGCT	4 cut(s)	15, 177, 223, 283
Alw21I	GWGCWC	2 cut(s)	17, 285
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	174
ApoI	RAATTY	2 cut(s)	105, 242
AspLEI	GCGC	2 cut(s)	32, 168
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	2 cut(s)	140, 314
AsuHPI	GGTGA	3 cut(s)	45, 67, 200
BanII	GRGCYC	2 cut(s)	17, 285
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	2 cut(s)	17, 285
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	2 cut(s)	271, 277
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	2 cut(s)	140, 314
BfaI	CTAG	2 cut(s)	224, 322
BfoI	RGCGCY	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	1 cut(s)	175
BlpI	GCTNAGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	3 cut(s)	140, 305, 314
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	3 cut(s)	140, 305, 314
BpiI	GAAGAC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	146
Bpu1102I	GCTNAGC	1 cut(s)	178
BpuMI	CCSGG	2 cut(s)	140, 314
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	304
Bse118I	RCCGGY	2 cut(s)	168, 182
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	192, 224
BseXI	GCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	17, 285
BsiSI	CCGG	4 cut(s)	140, 169, 183, 314
BsnI	GGCC	1 cut(s)	309
Bsp1286I	GDGCHC	2 cut(s)	17, 285
Bsp143I	GATC	2 cut(s)	213, 267
Bsp1720I	GCTNAGC	1 cut(s)	178
BspACI	CCGC	2 cut(s)	35, 186
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	2 cut(s)	191, 223
BspLI	GGNNCC	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	86
BsrFI	RCCGGY	2 cut(s)	168, 182
BssAI	RCCGGY	2 cut(s)	168, 182
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	213, 267
BssNI	GRCGYC	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	28, 184, 207
BstDEI	CTNAG	2 cut(s)	178, 210
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	2 cut(s)	32, 168
BstKTI	GATC	2 cut(s)	216, 270
BstMBI	GATC	2 cut(s)	213, 267
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 78, 174, 183, 215
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	138, 303, 312
BstV1I	GCAGC	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	3 cut(s)	28, 184, 207
CfoI	GCGC	2 cut(s)	32, 168
Cfr10I	RCCGGY	2 cut(s)	168, 182
Cfr13I	GGNCC	1 cut(s)	307
CseI	GACGC	1 cut(s)	36
CviAII	CATG	1 cut(s)	295
DdeI	CTNAG	2 cut(s)	178, 210
DpnI	GATC	2 cut(s)	215, 269
DpnII	GATC	2 cut(s)	213, 267
Ecl136II	GAGCTC	2 cut(s)	15, 283
Eco24I	GRGCYC	2 cut(s)	17, 285
Eco53kI	GAGCTC	2 cut(s)	15, 283
EcoICRI	GAGCTC	2 cut(s)	15, 283
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	2 cut(s)	17, 285
FaeI	CATG	1 cut(s)	298
FaiI	YATR	4 cut(s)	45, 92, 117, 296
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	175
FriOI	GRGCYC	2 cut(s)	17, 285
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	2 cut(s)	224, 322
GlaI	GCGC	2 cut(s)	31, 167
GluI	GCNGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	4 cut(s)	140, 169, 183, 314
HgaI	GACGC	1 cut(s)	36
HhaI	GCGC	2 cut(s)	32, 168
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	2 cut(s)	30, 166
HinP1I	GCGC	2 cut(s)	30, 166
HincII	GTYRAC	2 cut(s)	199, 253
HindII	GTYRAC	2 cut(s)	199, 253
HpaII	CCGG	4 cut(s)	140, 169, 183, 314
HphI	GGTGA	3 cut(s)	45, 67, 200
Hpy166II	GTNNAC	2 cut(s)	199, 253
Hpy188I	TCNGA	3 cut(s)	213, 280, 287
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	2 cut(s)	199, 253
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 78, 174, 183, 215
HpyF3I	CTNAG	2 cut(s)	178, 210
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	2 cut(s)	30, 166
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	213, 267
LmnI	GCTCC	2 cut(s)	280, 287
LpnPI	CCDG	9 cut(s)	40, 91, 153, 176, 182, 191, 196, 290, 317
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	2 cut(s)	224, 322
MaeII	ACGT	1 cut(s)	249
MalI	GATC	2 cut(s)	215, 269
MboI	GATC	2 cut(s)	213, 267
MboII	GAAGA	4 cut(s)	125, 155, 158, 226
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	2 cut(s)	17, 285
MluCI	AATT	2 cut(s)	105, 242
MnlI	CCTC	3 cut(s)	61, 83, 170
MroNI	GCCGGC	1 cut(s)	182
MspI	CCGG	4 cut(s)	140, 169, 183, 314
MspR9I	CCNGG	3 cut(s)	140, 305, 314
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	5 cut(s)	27, 78, 174, 183, 215
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	2 cut(s)	140, 314
NdeII	GATC	2 cut(s)	213, 267
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	289
NmeAIII	GCCGAG	2 cut(s)	63, 244
PaqCI	CACCTGC	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	184
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	176
Psp124BI	GAGCTC	2 cut(s)	17, 285
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	267
SacI	GAGCTC	2 cut(s)	17, 285
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	2 cut(s)	213, 267
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	3 cut(s)	140, 305, 314
SduI	GDGCHC	2 cut(s)	17, 285
SetI	ASST	8 cut(s)	17, 58, 80, 179, 225, 252, 285, 323
SgrAI	CRCCGGYG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	2 cut(s)	105, 242
SsiI	CCGC	2 cut(s)	35, 186
SspMI	CTAG	2 cut(s)	224, 322
SstI	GAGCTC	2 cut(s)	17, 285
StyD4I	CCNGG	3 cut(s)	138, 303, 312
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	246
TasI	AATT	2 cut(s)	105, 242
TseI	GCWGC	1 cut(s)	174
XapI	RAATTY	2 cut(s)	105, 242
XspI	CTAG	2 cut(s)	224, 322
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.