Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002561

Physical Location & Seq

Genomic Coordinates Forward (+)

19790844 .. 19791349

Gene Structure 506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG106500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTTCGAGTTCGACAAGGACGGGGATGGCCACATCGACCTAGATCAGGAGTTCACAGAAATCATGAATGGATCGGGGTCGATCAAGGATCTCTGTGACGCTTTCGATGTCTACGATCTCGACAAGAACGGCCTGATCTCAGCGAGCGAACTTCATGAGGTGCTCAACTGCTTAGGGCAAAAGTGCTCCATCGGGGAATGTGCCACCATGACCACCAAATTTGACGTCGGCAGCGATGGCTGCGTTAACTTTTACGAGTTCAAGAAGATGATGGACCGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009909 GO:0019222 GO:0031323 GO:0043167 GO:0043169 GO:0046872 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0065007 GO:0065008 GO:0080164 GO:2000026 GO:2000241 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

94

Amino Acids

10.48

Weight (kDa)

4.2

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	29 - 91	2.2e-12	EF-hand domain pair
EF-hand_6	PF13405	31 - 59	1.1e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28870 FvH4_7g07200
rosa_chinensis	RchiOBHm_Chr1g0337231 RchiOBHm_Chr3g0493331 RchiOBHm_Chr6g0305841
rosa_laevigata	RLG00000022718 RLG00000029296 RLG00000029299 RLG00000029490 RLG00000033995
rosa_multiflora	Rmu_co8149994.1_g000001 Rmu_sc0000828.1_g000005 Rmu_sc0004469.1_g000017 Rmu_sc0006010.1_g000003 Rmu_sc0007874.1_g000001 Rmu_sc0017606.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314650 Rroxscaffold_4G00314700 Rroxscaffold_4G00317730 Rroxscaffold_6G00391630
rosa_rugosa	Rorug01G0128400 Rorug01G0132200.1 Rorug03G0260500 Rorug06G0344300.1
rosa_samantha	Rh1BG117500 Rh1BG121800 Rh1CG099300 Rh1CG107500 Rh1CG143900 Rh1DG106500 Rh1DG116300 Rh1DG160500 Rh3AG309600 Rh3CG342900 Rh3DG344700 Rh6AG456100 Rh6CG470100 Rh6DG456800
rosa_wichuraiana	Rw1G012520 Rw3G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	228
AccBSI	CCGCTC	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	2 cut(s)	79, 96
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	218
AcyI	GRCGYC	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	262
Alw21I	GWGCWC	2 cut(s)	165, 188
AlwI	GGATC	2 cut(s)	79, 96
AoxI	GGCC	2 cut(s)	28, 130
ApeKI	GCWGC	2 cut(s)	231, 240
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
AspS9I	GGNCC	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	274
BalI	TGGCCA	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	165, 188
BbvI	GCAGC	2 cut(s)	227, 243
BccI	CCATC	4 cut(s)	20, 197, 230, 265
BceAI	ACGGC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	41
BisI	GCNGC	2 cut(s)	232, 241
BlsI	GCNGC	2 cut(s)	233, 242
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	227, 243
BshFI	GGCC	2 cut(s)	30, 132
BsiHKAI	GWGCWC	2 cut(s)	165, 188
BslI	CCNNNNNNNGG	1 cut(s)	46
BsnI	GGCC	2 cut(s)	30, 132
Bsp1286I	GDGCHC	2 cut(s)	165, 188
Bsp143I	GATC	6 cut(s)	43, 71, 81, 88, 115, 135
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	2 cut(s)	30, 132
BspCNI	CTCAG	1 cut(s)	152
BspHI	TCATGA	2 cut(s)	63, 154
BspPI	GGATC	2 cut(s)	79, 96
BsrBI	CCGCTC	1 cut(s)	279
BssMI	GATC	6 cut(s)	43, 71, 81, 88, 115, 135
BssNI	GRCGYC	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	139, 172
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	6 cut(s)	46, 74, 84, 91, 118, 138
BstMBI	GATC	6 cut(s)	43, 71, 81, 88, 115, 135
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 240
BstV1I	GCAGC	2 cut(s)	227, 243
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	30, 132
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	145
CciI	TCATGA	2 cut(s)	63, 154
Cfr13I	GGNCC	1 cut(s)	274
CseI	GACGC	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	3 cut(s)	64, 155, 208
CviJI	RGCY	3 cut(s)	30, 132, 240
CviKI_1	RGCY	3 cut(s)	30, 132, 240
DdeI	CTNAG	2 cut(s)	139, 172
DpnI	GATC	6 cut(s)	45, 73, 83, 90, 117, 137
DpnII	GATC	6 cut(s)	43, 71, 81, 88, 115, 135
EaeI	YGGCCR	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	274
EcoNI	CCTNNNNNAGG	1 cut(s)	44
FaeI	CATG	3 cut(s)	67, 158, 211
FaiI	YATR	3 cut(s)	65, 156, 209
FatI	CATG	3 cut(s)	63, 154, 207
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	232, 241
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	232, 241
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	2 cut(s)	232, 241
HaeIII	GGCC	2 cut(s)	30, 132
HgaI	GACGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	67, 158, 211
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HpaI	GTTAAC	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	54, 112, 247
Hpy188III	TCNNGA	6 cut(s)	47, 64, 119, 155, 262, 282
Hpy8I	GTNNAC	3 cut(s)	54, 112, 247
Hpy99I	CGWCG	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 240
HpyF3I	CTNAG	2 cut(s)	139, 172
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	67, 158, 211
KspAI	GTTAAC	1 cut(s)	247
Kzo9I	GATC	6 cut(s)	43, 71, 81, 88, 115, 135
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	2 cut(s)	32, 146
Lsp1109I	GCAGC	2 cut(s)	227, 243
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	6 cut(s)	45, 73, 83, 90, 117, 137
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	6 cut(s)	43, 71, 81, 88, 115, 135
MboII	GAAGA	1 cut(s)	277
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	2 cut(s)	165, 188
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	1 cut(s)	218
MluNI	TGGCCA	1 cut(s)	30
MnlI	CCTC	1 cut(s)	151
Mox20I	TGGCCA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	237, 240
NdeII	GATC	6 cut(s)	43, 71, 81, 88, 115, 135
NlaIII	CATG	3 cut(s)	67, 158, 211
NmuCI	GTSAC	1 cut(s)	95
PagI	TCATGA	2 cut(s)	63, 154
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 231
PkrI	GCNGC	2 cut(s)	233, 242
PspPI	GGNCC	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	232, 241
Sau3AI	GATC	6 cut(s)	43, 71, 81, 88, 115, 135
Sau96I	GGNCC	1 cut(s)	274
SduI	GDGCHC	2 cut(s)	165, 188
SetI	ASST	3 cut(s)	42, 162, 228
SinI	GGWCC	1 cut(s)	274
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	1 cut(s)	41
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	6 cut(s)	6, 12, 36, 80, 105, 120
TasI	AATT	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	2 cut(s)	231, 240
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	80, 143
VpaK11BI	GGWCC	1 cut(s)	274
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	1 cut(s)	41
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.