Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004469.1

Orthogroup ID

OG0002561

Physical Location & Seq

Genomic Coordinates Reverse (-)

52894 .. 53349

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004469.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgtcatcgagtttcagcagttcaagaagtggcagcggcatggtggtacccatggaagaggtacagaaggtcttcaacaagttcgacgagaatggtgacggactcatctcttgcgatgagctcaagaacgttttgtgtcagctggggtggaatatgcagtcggaggaagtgcagaatgtgatgttcgacaaggacggcgacggccacatcgacctggaggagttcacaaaactcatgaatcaatctgcgtcaagcgaggaaatccgtgacgccttcgatgtctacgatctcgacaagaacggcctgatgtcggctagcgaacttcatgaggtgcttaacagcttagggcataagtactccgtcggggaatgtgccaccatgatcaccaaatttgacgccaatggagatggcttcattaactttcaagagttcaagaatatgatgaaccgcccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009909 GO:0019222 GO:0031323 GO:0043167 GO:0043169 GO:0046872 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0065007 GO:0065008 GO:0080164 GO:2000026 GO:2000241 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

151

Amino Acids

16.92

Weight (kDa)

4.36

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28870 FvH4_7g07200
rosa_chinensis	RchiOBHm_Chr1g0337231 RchiOBHm_Chr3g0493331 RchiOBHm_Chr6g0305841
rosa_laevigata	RLG00000022718 RLG00000029296 RLG00000029299 RLG00000029490 RLG00000033995
rosa_multiflora	Rmu_co8149994.1_g000001 Rmu_sc0000828.1_g000005 Rmu_sc0004469.1_g000017 Rmu_sc0006010.1_g000003 Rmu_sc0007874.1_g000001 Rmu_sc0017606.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314650 Rroxscaffold_4G00314700 Rroxscaffold_4G00317730 Rroxscaffold_6G00391630
rosa_rugosa	Rorug01G0128400 Rorug01G0132200.1 Rorug03G0260500 Rorug06G0344300.1
rosa_samantha	Rh1BG117500 Rh1BG121800 Rh1CG099300 Rh1CG107500 Rh1CG143900 Rh1DG106500 Rh1DG116300 Rh1DG160500 Rh3AG309600 Rh3CG342900 Rh3DG344700 Rh6AG456100 Rh6CG470100 Rh6DG456800
rosa_wichuraiana	Rw1G012520 Rw3G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	2 cut(s)	36, 448
AclI	AACGTT	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	389
AcyI	GRCGYC	2 cut(s)	270, 396
AfaI	GTAC	3 cut(s)	48, 63, 356
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	4 cut(s)	24, 76, 425, 433
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	3 cut(s)	121, 142, 342
AluI	AGCT	3 cut(s)	121, 142, 342
Alw21I	GWGCWC	1 cut(s)	123
AoxI	GGCC	2 cut(s)	202, 301
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	389
Asp700I	GAANNNNTTC	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	107, 376
AsuNHI	GCTAGC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	3 cut(s)	211, 217, 316
BciT130I	CCWGG	1 cut(s)	215
BclI	TGATCA	1 cut(s)	381
BfaI	CTAG	1 cut(s)	315
BisI	GCNGC	2 cut(s)	34, 37
BlsI	GCNGC	2 cut(s)	35, 38
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	215
BmtI	GCTAGC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	107
BsaHI	GRCGYC	2 cut(s)	270, 396
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	45
BseYI	CCCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	204, 303
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	310
BsnI	GGCC	2 cut(s)	204, 303
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	286, 381
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	2 cut(s)	36, 448
BspANI	GGCC	2 cut(s)	204, 303
BspHI	TCATGA	2 cut(s)	234, 325
BspLI	GGNNCC	1 cut(s)	48
BspOI	GCTAGC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	286, 381
BssNI	GRCGYC	2 cut(s)	270, 396
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	2 cut(s)	270, 396
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	343
BstDSI	CCRYGG	1 cut(s)	51
BstKTI	GATC	2 cut(s)	289, 384
BstMBI	GATC	2 cut(s)	286, 381
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	204, 303
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	316
CciI	TCATGA	2 cut(s)	234, 325
CseI	GACGC	3 cut(s)	237, 278, 404
Csp6I	GTAC	3 cut(s)	47, 62, 355
CviAII	CATG	5 cut(s)	40, 52, 235, 326, 379
CviJI	RGCY	7 cut(s)	121, 142, 204, 303, 314, 342, 411
CviKI_1	RGCY	7 cut(s)	121, 142, 204, 303, 314, 342, 411
CviQI	GTAC	3 cut(s)	47, 62, 355
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	2 cut(s)	288, 383
DpnII	GATC	2 cut(s)	286, 381
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	5 cut(s)	43, 55, 238, 329, 382
FaiI	YATR	8 cut(s)	41, 53, 155, 236, 327, 351, 380, 440
FatI	CATG	5 cut(s)	39, 51, 234, 325, 378
FbaI	TGATCA	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	34, 37
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	2 cut(s)	34, 37
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	2 cut(s)	34, 37
GsaI	CCCAGC	1 cut(s)	146
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	204, 303
HgaI	GACGC	3 cut(s)	237, 278, 404
Hin1I	GRCGYC	2 cut(s)	270, 396
Hin1II	CATG	5 cut(s)	43, 55, 238, 329, 382
HinfI	GANTC	2 cut(s)	102, 238
HphI	GGTGA	2 cut(s)	107, 376
Hpy166II	GTNNAC	2 cut(s)	225, 283
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	7 cut(s)	24, 124, 235, 290, 326, 425, 433
Hpy8I	GTNNAC	2 cut(s)	225, 283
Hpy99I	CGWCG	3 cut(s)	89, 203, 365
HpyAV	CCTTC	2 cut(s)	61, 283
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	157, 172
HpyF3I	CTNAG	1 cut(s)	343
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	2 cut(s)	270, 396
Hsp92II	CATG	5 cut(s)	43, 55, 238, 329, 382
KpnI	GGTACC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	286, 381
LpnPI	CCDG	4 cut(s)	128, 200, 227, 317
Lsp1109I	GCAGC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	95, 266
MalI	GATC	2 cut(s)	288, 383
MboI	GATC	2 cut(s)	286, 381
MboII	GAAGA	2 cut(s)	64, 68
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	52, 157, 211, 250, 322
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	3 cut(s)	336, 417, 454
MspA1I	CMGCKG	2 cut(s)	36, 142
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	286, 381
NheI	GCTAGC	1 cut(s)	314
NlaIII	CATG	5 cut(s)	43, 55, 238, 329, 382
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	95, 266
PagI	TCATGA	2 cut(s)	234, 325
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 282
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	35, 38
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	123
Psp1406I	AACGTT	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	48
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	3 cut(s)	48, 63, 356
RsaNI	GTAC	3 cut(s)	47, 62, 355
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	336, 417, 454
SatI	GCNGC	2 cut(s)	34, 37
Sau3AI	GATC	2 cut(s)	286, 381
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	8 cut(s)	63, 72, 123, 132, 144, 216, 333, 344
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	389
SsiI	CCGC	2 cut(s)	36, 448
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	6 cut(s)	8, 84, 186, 210, 276, 291
TasI	AATT	1 cut(s)	389
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	3 cut(s)	336, 417, 454
Tru9I	TTAA	3 cut(s)	336, 417, 454
TseFI	GTSAC	2 cut(s)	95, 266
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	2 cut(s)	95, 266
TspDTI	ATGAA	3 cut(s)	251, 314, 403
TspGWI	ACGGA	3 cut(s)	114, 254, 349
XapI	RAATTY	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	315
ZrmI	AGTACT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.