Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007874.1

Orthogroup ID

OG0002561

Physical Location & Seq

Genomic Coordinates Reverse (-)

213 .. 605

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007874.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggggtgggagatgaagccagaggaagtgcagactctgatgtccgagttcgacaaggacggggacggctacatcgacctggaggagttcacagaaatcatgaacagattggggtcgagcaaggatctccgtgatgccttcgatgtctacgatctcgacaaggacggcctgatcttggcgagcaaacttcatgaggtgctcaaccgcttaggactgaagtgctcggtaggggaatgtgccaccatgatcactaaatttgacgtcactggcgatggttgcgttaactttcacgagttcaagaagatgatgaactgctctaatttatcaatttcatcaaaagccatttggattaggatttcgaattctttattgggatttggggttaggttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

130

Amino Acids

14.7

Weight (kDa)

4.78

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28870 FvH4_7g07200
rosa_chinensis	RchiOBHm_Chr1g0337231 RchiOBHm_Chr3g0493331 RchiOBHm_Chr6g0305841
rosa_laevigata	RLG00000022718 RLG00000029296 RLG00000029299 RLG00000029490 RLG00000033995
rosa_multiflora	Rmu_co8149994.1_g000001 Rmu_sc0000828.1_g000005 Rmu_sc0004469.1_g000017 Rmu_sc0006010.1_g000003 Rmu_sc0007874.1_g000001 Rmu_sc0017606.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314650 Rroxscaffold_4G00314700 Rroxscaffold_4G00317730 Rroxscaffold_6G00391630
rosa_rugosa	Rorug01G0128400 Rorug01G0132200.1 Rorug03G0260500 Rorug06G0344300.1
rosa_samantha	Rh1BG117500 Rh1BG121800 Rh1CG099300 Rh1CG107500 Rh1CG143900 Rh1DG106500 Rh1DG116300 Rh1DG160500 Rh3AG309600 Rh3CG342900 Rh3DG344700 Rh6AG456100 Rh6CG470100 Rh6DG456800
rosa_wichuraiana	Rw1G012520 Rw3G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
AatII	GACGTC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	2 cut(s)	254, 361
AcuI	CTGAAG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	78
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
Alw21I	GWGCWC	2 cut(s)	201, 224
AlwI	GGATC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	37
AoxI	GGCC	1 cut(s)	166
ApoI	RAATTY	2 cut(s)	254, 361
AsuII	TTCGAA	1 cut(s)	359
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	2 cut(s)	201, 224
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	2 cut(s)	82, 181
BciT130I	CCWGG	1 cut(s)	80
BclI	TGATCA	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	208
Bpu14I	TTCGAA	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	2 cut(s)	201, 224
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	201, 224
Bsp143I	GATC	4 cut(s)	124, 151, 171, 246
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	168
BspHI	TCATGA	2 cut(s)	99, 190
BspPI	GGATC	1 cut(s)	132
BspT104I	TTCGAA	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	271
BssMI	GATC	4 cut(s)	124, 151, 171, 246
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	208
BstKTI	GATC	4 cut(s)	127, 154, 174, 249
BstMBI	GATC	4 cut(s)	124, 151, 171, 246
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	37
CciI	TCATGA	2 cut(s)	99, 190
CviAII	CATG	3 cut(s)	100, 191, 244
CviJI	RGCY	4 cut(s)	19, 69, 168, 341
CviKI_1	RGCY	4 cut(s)	19, 69, 168, 341
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	4 cut(s)	126, 153, 173, 248
DpnII	GATC	4 cut(s)	124, 151, 171, 246
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	78
FaeI	CATG	3 cut(s)	103, 194, 247
FaiI	YATR	3 cut(s)	101, 192, 245
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	3 cut(s)	99, 190, 243
FbaI	TGATCA	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	103, 194, 247
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	34
HpaI	GTTAAC	1 cut(s)	283
Hpy166II	GTNNAC	3 cut(s)	90, 148, 283
Hpy188I	TCNGA	2 cut(s)	39, 46
Hpy188III	TCNNGA	5 cut(s)	100, 155, 191, 290, 298
Hpy8I	GTNNAC	3 cut(s)	90, 148, 283
HpyAV	CCTTC	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	103, 194, 247
Ksp22I	TGATCA	1 cut(s)	246
KspAI	GTTAAC	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	124, 151, 171, 246
LpnPI	CCDG	5 cut(s)	33, 65, 92, 182, 252
LweI	GCATC	1 cut(s)	124
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	4 cut(s)	126, 153, 173, 248
MboI	GATC	4 cut(s)	124, 151, 171, 246
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	2 cut(s)	201, 224
MluCI	AATT	4 cut(s)	254, 319, 327, 361
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	3 cut(s)	16, 76, 187
MseI	TTAA	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	4 cut(s)	124, 151, 171, 246
NlaIII	CATG	3 cut(s)	103, 194, 247
NmuCI	GTSAC	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	359
PagI	TCATGA	2 cut(s)	99, 190
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 147, 267
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	4 cut(s)	124, 151, 171, 246
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	201, 224
SetI	ASST	4 cut(s)	81, 198, 264, 389
SfaNI	GCATC	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	359
Sse9I	AATT	4 cut(s)	254, 319, 327, 361
SsiI	CCGC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	6 cut(s)	51, 75, 116, 141, 156, 359
TasI	AATT	4 cut(s)	254, 319, 327, 361
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	5 cut(s)	29, 116, 179, 321, 323
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	271
XapI	RAATTY	2 cut(s)	254, 361
XmiI	GTMKAC	1 cut(s)	147
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.