Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002561

Physical Location & Seq

Genomic Coordinates Reverse (-)

62727904 .. 62728125

Gene Structure 222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG456800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGAATGGATCGGCGTGGAGCAAGGATCTTCGTGACACCTTTGATGTCTACGATCTCGACAAGAACTGTCTGATCTCGGCGAGTGAACTTCATGAGGTGCTCAACCTGTTAGGGCAGAAGTGCTCCGTTGGGGAATGTGCCACCATGATCACCAAATTTGACTTCAATGGCGATGACTTCGTTAATTTTCAAGAGTTCAAAACGATGATGAACCGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009909 GO:0019222 GO:0031323 GO:0043167 GO:0043169 GO:0046872 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0065007 GO:0065008 GO:0080164 GO:2000026 GO:2000241 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

73

Amino Acids

8.4

Weight (kDa)

4.51

Isoelectric Point (pI)

17.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	8 - 70	2.7e-11	EF-hand domain pair
EF-hand_8	PF13833	25 - 72	3.7e-06	EF-hand domain pair
EF-hand_1	PF00036	46 - 72	5e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28870 FvH4_7g07200
rosa_chinensis	RchiOBHm_Chr1g0337231 RchiOBHm_Chr3g0493331 RchiOBHm_Chr6g0305841
rosa_laevigata	RLG00000022718 RLG00000029296 RLG00000029299 RLG00000029490 RLG00000033995
rosa_multiflora	Rmu_co8149994.1_g000001 Rmu_sc0000828.1_g000005 Rmu_sc0004469.1_g000017 Rmu_sc0006010.1_g000003 Rmu_sc0007874.1_g000001 Rmu_sc0017606.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314650 Rroxscaffold_4G00314700 Rroxscaffold_4G00317730 Rroxscaffold_6G00391630
rosa_rugosa	Rorug01G0128400 Rorug01G0132200.1 Rorug03G0260500 Rorug06G0344300.1
rosa_samantha	Rh1BG117500 Rh1BG121800 Rh1CG099300 Rh1CG107500 Rh1CG143900 Rh1DG106500 Rh1DG116300 Rh1DG160500 Rh3AG309600 Rh3CG342900 Rh3DG344700 Rh6AG456100 Rh6CG470100 Rh6DG456800
rosa_wichuraiana	Rw1G012520 Rw3G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	2 cut(s)	16, 33
AcsI	RAATTY	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	166, 191, 199
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
Alw21I	GWGCWC	2 cut(s)	102, 125
AlwI	GGATC	2 cut(s)	16, 33
ApoI	RAATTY	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	142
Bbv12I	GWGCWC	2 cut(s)	102, 125
BclI	TGATCA	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	102, 125
Bsp1286I	GDGCHC	2 cut(s)	102, 125
Bsp143I	GATC	5 cut(s)	8, 25, 52, 72, 147
BspACI	CCGC	1 cut(s)	214
BspHI	TCATGA	1 cut(s)	91
BspPI	GGATC	2 cut(s)	16, 33
BssMI	GATC	5 cut(s)	8, 25, 52, 72, 147
Bst4CI	ACNGT	1 cut(s)	68
BstKTI	GATC	5 cut(s)	11, 28, 55, 75, 150
BstMBI	GATC	5 cut(s)	8, 25, 52, 72, 147
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	186
CciI	TCATGA	1 cut(s)	91
CviAII	CATG	2 cut(s)	92, 145
DpnI	GATC	5 cut(s)	10, 27, 54, 74, 149
DpnII	GATC	5 cut(s)	8, 25, 52, 72, 147
FaeI	CATG	2 cut(s)	95, 148
FaiI	YATR	2 cut(s)	93, 146
FatI	CATG	2 cut(s)	91, 144
FbaI	TGATCA	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	95, 148
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	49, 86
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	4 cut(s)	32, 56, 92, 191
Hpy8I	GTNNAC	2 cut(s)	49, 86
HpyCH4III	ACNGT	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	95, 148
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	5 cut(s)	8, 25, 52, 72, 147
LmnI	GCTCC	2 cut(s)	18, 128
LpnPI	CCDG	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	5 cut(s)	10, 27, 54, 74, 149
MboI	GATC	5 cut(s)	8, 25, 52, 72, 147
MboII	GAAGA	1 cut(s)	20
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	102, 125
MluCI	AATT	2 cut(s)	155, 184
MnlI	CCTC	1 cut(s)	88
MseI	TTAA	1 cut(s)	183
NdeII	GATC	5 cut(s)	8, 25, 52, 72, 147
NlaIII	CATG	2 cut(s)	95, 148
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	32
PagI	TCATGA	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	183
Sau3AI	GATC	5 cut(s)	8, 25, 52, 72, 147
SduI	GDGCHC	2 cut(s)	102, 125
SetI	ASST	3 cut(s)	41, 99, 108
Sse9I	AATT	2 cut(s)	155, 184
SsiI	CCGC	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	57
TasI	AATT	2 cut(s)	155, 184
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	17, 80
TspGWI	ACGGA	1 cut(s)	115
XapI	RAATTY	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.