Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002561

Physical Location & Seq

Genomic Coordinates Forward (+)

21850288 .. 21850569

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG107500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTCGAGTTCGACAAGGACGGGGATGGCCACATTGACCTGGAGGAGTTCACAGAAATCATGAATGGATCGGGGTCGATCAAGGATCTTCGTGATGCTTTCGATGTCTACTATCTCGACAAGAACGGCCTGATCTCAGCGAGCAAACTTCATGAGGTGCTCAACCGCTTAGGGCAGAAGTGCTCCGTCAGGGAATGTGCCACCATGATCACCAAATTTGACGTCGGCAGCAATGGCTGTGTTAACTTTTATGAGTTCAAGAAGATGATGGACCTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009909 GO:0019222 GO:0031323 GO:0043167 GO:0043169 GO:0046872 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0065007 GO:0065008 GO:0080164 GO:2000026 GO:2000241 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

93

Amino Acids

10.57

Weight (kDa)

4.74

Isoelectric Point (pI)

25.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	3 - 22	6.6e-07	EF hand domain
EF-hand_7	PF13499	28 - 90	7.6e-10	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28870 FvH4_7g07200
rosa_chinensis	RchiOBHm_Chr1g0337231 RchiOBHm_Chr3g0493331 RchiOBHm_Chr6g0305841
rosa_laevigata	RLG00000022718 RLG00000029296 RLG00000029299 RLG00000029490 RLG00000033995
rosa_multiflora	Rmu_co8149994.1_g000001 Rmu_sc0000828.1_g000005 Rmu_sc0004469.1_g000017 Rmu_sc0006010.1_g000003 Rmu_sc0007874.1_g000001 Rmu_sc0017606.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314650 Rroxscaffold_4G00314700 Rroxscaffold_4G00317730 Rroxscaffold_6G00391630
rosa_rugosa	Rorug01G0128400 Rorug01G0132200.1 Rorug03G0260500 Rorug06G0344300.1
rosa_samantha	Rh1BG117500 Rh1BG121800 Rh1CG099300 Rh1CG107500 Rh1CG143900 Rh1DG106500 Rh1DG116300 Rh1DG160500 Rh3AG309600 Rh3CG342900 Rh3DG344700 Rh6AG456100 Rh6CG470100 Rh6DG456800
rosa_wichuraiana	Rw1G012520 Rw3G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	2 cut(s)	76, 93
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	39
Alw21I	GWGCWC	2 cut(s)	162, 185
AlwI	GGATC	2 cut(s)	76, 93
AoxI	GGCC	2 cut(s)	28, 127
ApeKI	GCWGC	1 cut(s)	228
ApoI	RAATTY	1 cut(s)	215
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	271
BalI	TGGCCA	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	162, 185
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	2 cut(s)	20, 262
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	41
BclI	TGATCA	1 cut(s)	207
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	240
BshFI	GGCC	2 cut(s)	30, 129
BsiHKAI	GWGCWC	2 cut(s)	162, 185
BsnI	GGCC	2 cut(s)	30, 129
Bsp1286I	GDGCHC	2 cut(s)	162, 185
Bsp143I	GATC	5 cut(s)	68, 78, 85, 132, 207
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	2 cut(s)	30, 129
BspCNI	CTCAG	1 cut(s)	149
BspHI	TCATGA	2 cut(s)	60, 151
BspPI	GGATC	2 cut(s)	76, 93
BsrDI	GCAATG	1 cut(s)	238
BssMI	GATC	5 cut(s)	68, 78, 85, 132, 207
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	136, 169
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	5 cut(s)	71, 81, 88, 135, 210
BstMBI	GATC	5 cut(s)	68, 78, 85, 132, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	30, 129
BtsCI	GGATG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	142
CciI	TCATGA	2 cut(s)	60, 151
Cfr13I	GGNCC	1 cut(s)	271
CviAII	CATG	3 cut(s)	61, 152, 205
CviJI	RGCY	3 cut(s)	30, 129, 237
CviKI_1	RGCY	3 cut(s)	30, 129, 237
DdeI	CTNAG	2 cut(s)	136, 169
DpnI	GATC	5 cut(s)	70, 80, 87, 134, 209
DpnII	GATC	5 cut(s)	68, 78, 85, 132, 207
EaeI	YGGCCR	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	64, 155, 208
FaiI	YATR	4 cut(s)	62, 153, 206, 252
FatI	CATG	3 cut(s)	60, 151, 204
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	30, 129
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	64, 155, 208
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HpaI	GTTAAC	1 cut(s)	244
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	3 cut(s)	51, 109, 244
Hpy188III	TCNNGA	6 cut(s)	61, 92, 116, 152, 259, 279
Hpy8I	GTNNAC	3 cut(s)	51, 109, 244
Hpy99I	CGWCG	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	2 cut(s)	136, 169
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	64, 155, 208
Ksp22I	TGATCA	1 cut(s)	207
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	68, 78, 85, 132, 207
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	4 cut(s)	26, 53, 143, 175
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	1 cut(s)	85
MaeII	ACGT	1 cut(s)	222
MalI	GATC	5 cut(s)	70, 80, 87, 134, 209
MboI	GATC	5 cut(s)	68, 78, 85, 132, 207
MboII	GAAGA	2 cut(s)	80, 274
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	162, 185
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	1 cut(s)	215
MluNI	TGGCCA	1 cut(s)	30
MnlI	CCTC	2 cut(s)	37, 148
Mox20I	TGGCCA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	234
NdeII	GATC	5 cut(s)	68, 78, 85, 132, 207
NlaIII	CATG	3 cut(s)	64, 155, 208
PagI	TCATGA	2 cut(s)	60, 151
PkrI	GCNGC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	5 cut(s)	68, 78, 85, 132, 207
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	2 cut(s)	162, 185
SetI	ASST	4 cut(s)	42, 159, 225, 276
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	271
Sse9I	AATT	1 cut(s)	215
SsiI	CCGC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	39
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	5 cut(s)	6, 12, 77, 102, 117
TasI	AATT	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	1 cut(s)	228
TspDTI	ATGAA	2 cut(s)	77, 140
TspGWI	ACGGA	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	108
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.