Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002561

Physical Location & Seq

Genomic Coordinates Reverse (-)

64688826 .. 64689215

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27487

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAGCTGGAAGAAATGTATACTGTGATGTCCGAGTTCGATAAAGACTCCGACGGCCACATCGACCTAGAGGAGTTCTCAGAAATCATGAATGGATCGGTGTGGAGCAAGGATCTTCGTGACACCTTTGATCTCTACAATCTCGACAAGAAATGCCTAATCTCGGCGAGTGAACTTCATGAGTTGCTCAAGCTGTTAGGGCAGAAGTGCTCCGTTGGGGAATGTGCCACCATGATCACCAAATTTGACTTCAATGGCGATGGCTTCGTTAAAACCGTTTTTGAAATCTTGATCTATCAATTTCATCAAAATCCATTTCAATTAGCATTTCATATTTTTCATAGGGATTTAGGATTAGGTTTTGAGTTTGTAATTCGACCCACATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0001505 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009416 GO:0009605 GO:0009612 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009909 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0016020 GO:0019222 GO:0022414 GO:0031323 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043167 GO:0043169 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051592 GO:0061458 GO:0065007 GO:0065008 GO:0071944 GO:0080164 GO:0097305 GO:1901700 GO:2000026 GO:2000241 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

129

Amino Acids

15.01

Weight (kDa)

4.78

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	8 - 31	6.3e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28870 FvH4_7g07200
rosa_chinensis	RchiOBHm_Chr1g0337231 RchiOBHm_Chr3g0493331 RchiOBHm_Chr6g0305841
rosa_laevigata	RLG00000022718 RLG00000029296 RLG00000029299 RLG00000029490 RLG00000033995
rosa_multiflora	Rmu_co8149994.1_g000001 Rmu_sc0000828.1_g000005 Rmu_sc0004469.1_g000017 Rmu_sc0006010.1_g000003 Rmu_sc0007874.1_g000001 Rmu_sc0017606.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314650 Rroxscaffold_4G00314700 Rroxscaffold_4G00317730 Rroxscaffold_6G00391630
rosa_rugosa	Rorug01G0128400 Rorug01G0132200.1 Rorug03G0260500 Rorug06G0344300.1
rosa_samantha	Rh1BG117500 Rh1BG121800 Rh1CG099300 Rh1CG107500 Rh1CG143900 Rh1DG106500 Rh1DG116300 Rh1DG160500 Rh3AG309600 Rh3CG342900 Rh3DG344700 Rh6AG456100 Rh6CG470100 Rh6DG456800
rosa_wichuraiana	Rw1G012520 Rw3G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	20
AclWI	GGATC	2 cut(s)	103, 120
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	3 cut(s)	253, 284, 320
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	2 cut(s)	7, 193
AluI	AGCT	2 cut(s)	7, 193
Alw21I	GWGCWC	1 cut(s)	212
AlwI	GGATC	2 cut(s)	103, 120
AoxI	GGCC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	212
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	70
BclI	TGATCA	1 cut(s)	234
BfaI	CTAG	1 cut(s)	68
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpuEI	CTTGAG	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	163
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	5 cut(s)	95, 112, 130, 234, 291
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	92
BspHI	TCATGA	2 cut(s)	87, 178
BspPI	GGATC	2 cut(s)	103, 120
BssMI	GATC	5 cut(s)	95, 112, 130, 234, 291
BssNAI	GTATAC	1 cut(s)	21
Bst1107I	GTATAC	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	25, 277
BstDEI	CTNAG	1 cut(s)	79
BstKTI	GATC	5 cut(s)	98, 115, 133, 237, 294
BstMBI	GATC	5 cut(s)	95, 112, 130, 234, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BstZ17I	GTATAC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	273
CciI	TCATGA	2 cut(s)	87, 178
CviAII	CATG	3 cut(s)	88, 179, 232
CviJI	RGCY	4 cut(s)	7, 57, 193, 264
CviKI_1	RGCY	4 cut(s)	7, 57, 193, 264
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	5 cut(s)	97, 114, 132, 236, 293
DpnII	GATC	5 cut(s)	95, 112, 130, 234, 291
EaeI	YGGCCR	1 cut(s)	55
FaeI	CATG	3 cut(s)	91, 182, 235
FaiI	YATR	6 cut(s)	21, 89, 180, 233, 333, 342
FatI	CATG	3 cut(s)	87, 178, 231
FbaI	TGATCA	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	57
Hin1II	CATG	3 cut(s)	91, 182, 235
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	21, 173
Hpy188I	TCNGA	3 cut(s)	34, 52, 82
Hpy188III	TCNNGA	5 cut(s)	88, 119, 143, 179, 289
Hpy8I	GTNNAC	2 cut(s)	21, 173
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4III	ACNGT	2 cut(s)	25, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	91, 182, 235
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	5 cut(s)	95, 112, 130, 234, 291
LmnI	GCTCC	2 cut(s)	105, 215
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	5 cut(s)	97, 114, 132, 236, 293
MboI	GATC	5 cut(s)	95, 112, 130, 234, 291
MboII	GAAGA	2 cut(s)	23, 107
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	4 cut(s)	242, 299, 320, 372
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	1 cut(s)	64
MseI	TTAA	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	199
NdeII	GATC	5 cut(s)	95, 112, 130, 234, 291
NlaIII	CATG	3 cut(s)	91, 182, 235
NmeAIII	GCCGAG	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	119
PagI	TCATGA	2 cut(s)	87, 178
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 273
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	270
Sau3AI	GATC	5 cut(s)	95, 112, 130, 234, 291
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	5 cut(s)	9, 69, 128, 195, 361
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	242, 299, 320, 372
SspMI	CTAG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	25, 277
TaqI	TCGA	4 cut(s)	39, 63, 144, 376
TasI	AATT	4 cut(s)	242, 299, 320, 372
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	6 cut(s)	17, 104, 167, 293, 320, 329
TspGWI	ACGGA	1 cut(s)	202
XapI	RAATTY	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.