Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002561

Physical Location & Seq

Genomic Coordinates Forward (+)

36169730 .. 36170190

Gene Structure 461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCATCGAGTTTCAACAGTTCAAAAAGCGGCAGTGGCGTGGTGGTACCTATGGAAGAGGTACAGAAGGTCTTCAACAAGTTCGACGAGAACAGTGACAGACTCATCTCCAGTGATGAGCTCAAAAACGTTCTCCGTGGGATGGGTTCGAGCAAGGATCTCCGCGATGCCTTCGATGTCTACGATCTCGACAAGAACGGCCTGATCTCAGCGAGCGAACTTCATGAGGTGCTCAACCGCTTAGGGCTGAAGTGCTTGGTAGGGGAATGTGCCACCATGATCACTAAATTTGACGTCAATGGCGATGGTTGTGTTAACTTTCACGAGTTCAAGAAGATGATGAACTGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009909 GO:0019222 GO:0031323 GO:0043167 GO:0043169 GO:0046872 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0065007 GO:0065008 GO:0080164 GO:2000026 GO:2000241 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

118

Amino Acids

12.94

Weight (kDa)

5.11

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	21 - 49	6.6e-06	EF-hand domain
EF-hand_7	PF13499	52 - 114	5.5e-14	EF-hand domain pair
EF-hand_1	PF00036	53 - 80	2.3e-06	EF hand domain
EF-hand_6	PF13405	53 - 82	3.1e-07	EF-hand domain
EF-hand_1	PF00036	90 - 115	2e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28870 FvH4_7g07200
rosa_chinensis	RchiOBHm_Chr1g0337231 RchiOBHm_Chr3g0493331 RchiOBHm_Chr6g0305841
rosa_laevigata	RLG00000022718 RLG00000029296 RLG00000029299 RLG00000029490 RLG00000033995
rosa_multiflora	Rmu_co8149994.1_g000001 Rmu_sc0000828.1_g000005 Rmu_sc0004469.1_g000017 Rmu_sc0006010.1_g000003 Rmu_sc0007874.1_g000001 Rmu_sc0017606.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314650 Rroxscaffold_4G00314700 Rroxscaffold_4G00317730 Rroxscaffold_6G00391630
rosa_rugosa	Rorug01G0128400 Rorug01G0132200.1 Rorug03G0260500 Rorug06G0344300.1
rosa_samantha	Rh1BG117500 Rh1BG121800 Rh1CG099300 Rh1CG107500 Rh1CG143900 Rh1DG106500 Rh1DG116300 Rh1DG160500 Rh3AG309600 Rh3CG342900 Rh3DG344700 Rh6AG456100 Rh6CG470100 Rh6DG456800
rosa_wichuraiana	Rw1G012520 Rw3G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
Acc65I	GGTACC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	165
AciI	CCGC	3 cut(s)	30, 163, 238
AclI	AACGTT	1 cut(s)	129
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	2 cut(s)	48, 63
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	4 cut(s)	16, 24, 76, 331
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw21I	GWGCWC	2 cut(s)	123, 234
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	123
BauI	CACGAG	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	123, 234
BccI	CCATC	2 cut(s)	136, 299
BceAI	ACGGC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	279
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	48
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	2 cut(s)	123, 234
BslI	CCNNNNNNNGG	1 cut(s)	142
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	123, 234
Bsp143I	GATC	4 cut(s)	157, 184, 204, 279
BspACI	CCGC	3 cut(s)	30, 163, 238
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	221
BspFNI	CGCG	1 cut(s)	165
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	4 cut(s)	157, 184, 204, 279
BssNI	GRCGYC	1 cut(s)	294
BssSI	CACGAG	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	20, 95
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	208, 241
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	4 cut(s)	160, 187, 207, 282
BstMBI	GATC	4 cut(s)	157, 184, 204, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstUI	CGCG	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	2 cut(s)	180, 318
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	3 cut(s)	40, 100, 118
Cac8I	GCNNGC	1 cut(s)	214
CciI	TCATGA	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	47, 62
CviAII	CATG	2 cut(s)	224, 277
CviJI	RGCY	3 cut(s)	121, 201, 247
CviKI_1	RGCY	3 cut(s)	121, 201, 247
CviQI	GTAC	2 cut(s)	47, 62
DdeI	CTNAG	2 cut(s)	208, 241
DpnI	GATC	4 cut(s)	159, 186, 206, 281
DpnII	GATC	4 cut(s)	157, 184, 204, 279
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	2 cut(s)	227, 280
FaiI	YATR	3 cut(s)	53, 225, 278
FatI	CATG	2 cut(s)	223, 276
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	227, 280
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	102
HpaI	GTTAAC	1 cut(s)	316
Hpy166II	GTNNAC	2 cut(s)	181, 316
Hpy188III	TCNNGA	4 cut(s)	188, 224, 323, 331
Hpy8I	GTNNAC	2 cut(s)	181, 316
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	61, 181
HpyCH4III	ACNGT	2 cut(s)	20, 95
HpyCH4IV	ACGT	2 cut(s)	129, 294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	2 cut(s)	208, 241
HpySE526I	ACGT	2 cut(s)	129, 294
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	227, 280
KpnI	GGTACC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	279
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	157, 184, 204, 279
LpnPI	CCDG	2 cut(s)	124, 215
LweI	GCATC	1 cut(s)	157
MaeII	ACGT	2 cut(s)	129, 294
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	4 cut(s)	159, 186, 206, 281
MboI	GATC	4 cut(s)	157, 184, 204, 279
MboII	GAAGA	3 cut(s)	64, 68, 346
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	123, 234
MluCI	AATT	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	2 cut(s)	52, 220
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	2 cut(s)	315, 352
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	36
NdeII	GATC	4 cut(s)	157, 184, 204, 279
NlaIII	CATG	2 cut(s)	227, 280
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	95
PagI	TCATGA	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 300
PdmI	GAANNNNTTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	32
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	123
Psp1406I	AACGTT	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	48, 63
RsaNI	GTAC	2 cut(s)	47, 62
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	315, 352
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	4 cut(s)	157, 184, 204, 279
SchI	GAGTC	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	123, 234
SetI	ASST	7 cut(s)	52, 63, 72, 123, 132, 231, 297
SfaNI	GCATC	1 cut(s)	157
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	3 cut(s)	30, 163, 238
SstI	GAGCTC	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	20, 95
TaiI	ACGT	2 cut(s)	132, 297
TaqI	TCGA	5 cut(s)	8, 84, 149, 174, 189
TasI	AATT	1 cut(s)	287
TauI	GCSGC	1 cut(s)	33
Tru1I	TTAA	2 cut(s)	315, 352
Tru9I	TTAA	2 cut(s)	315, 352
TscAI	CASTG	3 cut(s)	40, 100, 118
TseFI	GTSAC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	3 cut(s)	40, 100, 118
XapI	RAATTY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	71
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.