Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002561

Physical Location & Seq

Genomic Coordinates Reverse (-)

39457070 .. 39457858

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAATGGATCGGGGTCGATCAAGGATCTCTGTGACGCTTTCGATGTCTACAATCTCGACAAGAACGGCCTGATCTCAGCGAGCGAACTTCATGAGGTGCTCAACTGCTTAAGGCAGAAGTGCTCCGTCGGGAAAAGGAATAGTACTCTTCATGGTAATTCGGAGGATAGACCAGAAGTTTTCCTTGAGCCACTGGGAGTCCTTAGCTTGCTGTCAAATGAGAGTTCCCCGGGTTTGCCTACCAAAGCTAGAAAAACATTGCATGCAAATGTATTAGACTTAAATGACAACATCCCAGCCAGAGCTGCACGTTGGAATAATACTTGCAAATTAGTTCTCGCACAAATATCGAGTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009909 GO:0019222 GO:0031323 GO:0043167 GO:0043169 GO:0046872 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0065007 GO:0065008 GO:0080164 GO:2000026 GO:2000241 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

121

Amino Acids

13.0

Weight (kDa)

6.81

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28870 FvH4_7g07200
rosa_chinensis	RchiOBHm_Chr1g0337231 RchiOBHm_Chr3g0493331 RchiOBHm_Chr6g0305841
rosa_laevigata	RLG00000022718 RLG00000029296 RLG00000029299 RLG00000029490 RLG00000033995
rosa_multiflora	Rmu_co8149994.1_g000001 Rmu_sc0000828.1_g000005 Rmu_sc0004469.1_g000017 Rmu_sc0006010.1_g000003 Rmu_sc0007874.1_g000001 Rmu_sc0017606.1_g000006
rosa_roxburghii	Rroxscaffold_4G00314650 Rroxscaffold_4G00314700 Rroxscaffold_4G00317730 Rroxscaffold_6G00391630
rosa_rugosa	Rorug01G0128400 Rorug01G0132200.1 Rorug03G0260500 Rorug06G0344300.1
rosa_samantha	Rh1BG117500 Rh1BG121800 Rh1CG099300 Rh1CG107500 Rh1CG143900 Rh1DG106500 Rh1DG116300 Rh1DG160500 Rh3AG309600 Rh3CG342900 Rh3DG344700 Rh6AG456100 Rh6CG470100 Rh6DG456800
rosa_wichuraiana	Rw1G012520 Rw3G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AclWI	GGATC	2 cut(s)	16, 33
AfaI	GTAC	1 cut(s)	145
AflII	CTTAAG	1 cut(s)	109
AluBI	AGCT	3 cut(s)	207, 248, 305
AluI	AGCT	3 cut(s)	207, 248, 305
Alw21I	GWGCWC	2 cut(s)	102, 125
AlwI	GGATC	2 cut(s)	16, 33
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	305
AsuC2I	CCSGG	2 cut(s)	230, 231
AvaI	CYCGRG	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	102, 125
BbvI	GCAGC	1 cut(s)	292
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	1 cut(s)	330
BcnI	CCSGG	2 cut(s)	230, 231
BfaI	CTAG	1 cut(s)	249
BfrI	CTTAAG	1 cut(s)	109
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	230, 231
BmeT110I	CYCGRG	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	230, 231
BmrI	ACTGGG	1 cut(s)	203
BmuI	ACTGGG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	2 cut(s)	230, 231
BsaJI	CCNNGG	2 cut(s)	228, 229
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	228, 229
BseGI	GGATG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	102, 125
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	230
BsnI	GGCC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	102, 125
Bsp143I	GATC	4 cut(s)	8, 18, 25, 72
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	91
BspPI	GGATC	2 cut(s)	16, 33
BspTI	CTTAAG	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	228, 229
BssMI	GATC	4 cut(s)	8, 18, 25, 72
Bst6I	CTCTTC	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	109
BstC8I	GCNNGC	3 cut(s)	82, 209, 264
BstDEI	CTNAG	2 cut(s)	76, 203
BstF5I	GGATG	1 cut(s)	291
BstKTI	GATC	4 cut(s)	11, 21, 28, 75
BstMBI	GATC	4 cut(s)	8, 18, 25, 72
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	228, 229
BstV1I	GCAGC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	3 cut(s)	82, 209, 264
CciI	TCATGA	1 cut(s)	91
Cfr9I	CCCGGG	1 cut(s)	229
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	3 cut(s)	92, 152, 263
CviJI	RGCY	6 cut(s)	69, 190, 207, 248, 299, 305
CviKI_1	RGCY	6 cut(s)	69, 190, 207, 248, 299, 305
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	2 cut(s)	76, 203
DpnI	GATC	4 cut(s)	10, 20, 27, 74
DpnII	GATC	4 cut(s)	8, 18, 25, 72
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	229
FaeI	CATG	3 cut(s)	95, 155, 266
FaiI	YATR	3 cut(s)	93, 153, 264
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	3 cut(s)	91, 151, 262
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	1 cut(s)	306
GsaI	CCCAGC	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	95, 155, 266
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	3 cut(s)	56, 92, 130
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	4 cut(s)	262, 266, 308, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	2 cut(s)	76, 203
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	3 cut(s)	95, 155, 266
Kzo9I	GATC	4 cut(s)	8, 18, 25, 72
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	6 cut(s)	83, 179, 186, 243, 309, 313
Lsp1109I	GCAGC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	4 cut(s)	10, 20, 27, 74
MboI	GATC	4 cut(s)	8, 18, 25, 72
MboII	GAAGA	1 cut(s)	140
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	102, 125
MluCI	AATT	2 cut(s)	157, 329
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	2 cut(s)	88, 157
MseI	TTAA	2 cut(s)	110, 281
MslI	CAYNNNNRTG	1 cut(s)	267
MspCI	CTTAAG	1 cut(s)	109
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	230, 231
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	2 cut(s)	230, 231
NdeII	GATC	4 cut(s)	8, 18, 25, 72
NlaIII	CATG	3 cut(s)	95, 155, 266
NmuCI	GTSAC	1 cut(s)	32
NspI	RCATGY	1 cut(s)	266
PaeI	GCATGC	1 cut(s)	266
PagI	TCATGA	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	110, 281
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	4 cut(s)	8, 18, 25, 72
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	230, 231
SduI	GDGCHC	2 cut(s)	102, 125
SetI	ASST	5 cut(s)	99, 209, 250, 307, 313
SmaI	CCCGGG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	109, 185
SmoI	CTYRAG	2 cut(s)	109, 185
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	2 cut(s)	157, 329
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	228, 229
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	4 cut(s)	17, 42, 57, 350
TasI	AATT	2 cut(s)	157, 329
TatI	WGTACW	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	110, 281
Tru9I	TTAA	2 cut(s)	110, 281
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	17, 80, 140
TspGWI	ACGGA	1 cut(s)	115
TspMI	CCCGGG	1 cut(s)	229
TspRI	CASTG	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	109
XceI	RCATGY	1 cut(s)	266
XmaI	CCCGGG	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	249
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.