Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Forward (+)

4950122 .. 4950753

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05961.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAGCAGCCGGCTCAAAACCCTAAAGAGCACAGACGATGATCCGAAGTTCCGAACCACCAACCCCCCGCCGCCACAATTCCTTACTTACCAGACAACATCATCGAGAAAATCCTCTCCTTCCTTCCGATCAATCTGGCTGCCCAGGCCAACACCGTCTCCAAGCAGCGGGCGAAGCTATGGCCTTCCTTCATTACGATGCAAGGATCAGAGGGTCTTGGACAAGTTGAGGATTCGAGCCAGCCTTGAACTCGGCTTCCAAGAGGTAATTGAATGGCTTGATTTTGCAATGGAAAGGTGTGTCAAAGAGTTAGATATTCAAGATTTGGATCAGAATAGAATCAAAAACGCTACGAAAAACTTTTTGATTCCCCATGACGTTTTGACTTTGGAATCTTTGACCACTCTGAATTTGGAGAATGTTAGACTTTATGCAAGTTCCGGAATTGATGGTACTGTGAGCCTTCCCTCATTGAAAAACATGTCCCTCAAAGACGTGACATTTTTGGTGGATGTGGAGGACACAGCCATCAAGGCCTTACCCAGCTTAGTTTCGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_2

Protein Analysis

187

Amino Acids

20.91

Weight (kDa)

8.9

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	440
AciI	CCGC	3 cut(s)	68, 71, 168
AclWI	GGATC	3 cut(s)	35, 213, 336
AcsI	RAATTY	1 cut(s)	409
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	4 cut(s)	248, 272, 320, 475
AjiI	CACGTC	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	143
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
AluBI	AGCT	2 cut(s)	177, 546
AluI	AGCT	2 cut(s)	177, 546
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	3 cut(s)	35, 213, 336
Aor13HI	TCCGGA	1 cut(s)	440
AoxI	GGCC	3 cut(s)	146, 181, 534
ApeKI	GCWGC	3 cut(s)	6, 139, 165
ApoI	RAATTY	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	18, 126, 177
BccI	CCATC	2 cut(s)	443, 536
BciT130I	CCWGG	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	162
BglI	GCCNNNNNGGC	1 cut(s)	533
BisI	GCNGC	4 cut(s)	7, 71, 140, 166
BlsI	GCNGC	4 cut(s)	8, 72, 141, 167
Bme1390I	CCNGG	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	496
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	9
Bse3DI	GCAATG	1 cut(s)	294
Bse8I	GATNNNNATC	1 cut(s)	327
BseAI	TCCGGA	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	517
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	294
BseXI	GCAGC	3 cut(s)	18, 126, 177
BseYI	CCCAGC	1 cut(s)	542
BshFI	GGCC	3 cut(s)	148, 183, 536
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	10, 441
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	162
BsmBI	CGTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	469
BsnI	GGCC	3 cut(s)	148, 183, 536
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp13I	TCCGGA	1 cut(s)	440
Bsp143I	GATC	4 cut(s)	40, 128, 205, 328
BspACI	CCGC	3 cut(s)	68, 71, 168
BspANI	GGCC	3 cut(s)	148, 183, 536
BspEI	TCCGGA	1 cut(s)	440
BspPI	GGATC	3 cut(s)	35, 213, 336
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	4 cut(s)	40, 128, 205, 328
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	156, 457
BstC8I	GCNNGC	3 cut(s)	11, 170, 241
BstDEI	CTNAG	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	517
BstKTI	GATC	4 cut(s)	43, 131, 208, 331
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	4 cut(s)	40, 128, 205, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 174, 533
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	18, 126, 177
BsuRI	GGCC	3 cut(s)	148, 183, 536
BtrI	CACGTC	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	517
Cac8I	GCNNGC	3 cut(s)	11, 170, 241
Cfr10I	RCCGGY	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	2 cut(s)	374, 481
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	1 cut(s)	547
DpnI	GATC	4 cut(s)	42, 130, 207, 330
DpnII	GATC	4 cut(s)	40, 128, 205, 328
Eco147I	AGGCCT	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	2 cut(s)	377, 484
FaiI	YATR	4 cut(s)	180, 375, 432, 482
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	2 cut(s)	373, 480
FauI	CCCGC	2 cut(s)	75, 161
Fnu4HI	GCNGC	4 cut(s)	7, 71, 140, 166
FokI	GGATG	1 cut(s)	524
Fsp4HI	GCNGC	4 cut(s)	7, 71, 140, 166
GluI	GCNGC	4 cut(s)	7, 71, 140, 166
GsaI	CCCAGC	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	148, 183, 536
HapII	CCGG	2 cut(s)	10, 441
Hin1II	CATG	2 cut(s)	377, 484
HinfI	GANTC	4 cut(s)	232, 339, 367, 392
HpaII	CCGG	2 cut(s)	10, 441
Hpy188I	TCNGA	6 cut(s)	45, 53, 128, 210, 333, 408
Hpy188III	TCNNGA	4 cut(s)	105, 320, 441, 555
HpyAV	CCTTC	5 cut(s)	129, 133, 194, 198, 473
HpyCH4III	ACNGT	2 cut(s)	156, 457
HpyCH4IV	ACGT	2 cut(s)	378, 495
HpyCH4V	TGCA	3 cut(s)	201, 287, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 174, 533
HpyF3I	CTNAG	1 cut(s)	547
HpySE526I	ACGT	2 cut(s)	378, 495
Hsp92II	CATG	2 cut(s)	377, 484
Kpn2I	TCCGGA	1 cut(s)	440
KroI	GCCGGC	1 cut(s)	9
KroNI	GCCGGC	1 cut(s)	11
Kzo9I	GATC	4 cut(s)	40, 128, 205, 328
LpnPI	CCDG	8 cut(s)	23, 104, 121, 130, 157, 253, 454, 556
Lsp1109I	GCAGC	3 cut(s)	18, 126, 177
LweI	GCATC	1 cut(s)	188
MaeII	ACGT	2 cut(s)	378, 495
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	4 cut(s)	42, 130, 207, 330
MboI	GATC	4 cut(s)	40, 128, 205, 328
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	4 cut(s)	77, 267, 409, 444
MnlI	CCTC	7 cut(s)	124, 204, 222, 256, 478, 497, 511
MroI	TCCGGA	1 cut(s)	440
MroNI	GCCGGC	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	196
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	2 cut(s)	10, 441
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	3 cut(s)	145, 174, 533
NaeI	GCCGGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	40, 128, 205, 328
NgoMIV	GCCGGC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	377, 484
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	536
PciI	ACATGT	1 cut(s)	480
PdiI	GCCGGC	1 cut(s)	11
PfeI	GAWTC	4 cut(s)	232, 339, 367, 392
PkrI	GCNGC	4 cut(s)	8, 72, 141, 167
PscI	ACATGT	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
RseI	CAYNNNNRTG	1 cut(s)	196
SatI	GCNGC	4 cut(s)	7, 71, 140, 166
Sau3AI	GATC	4 cut(s)	40, 128, 205, 328
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	6 cut(s)	179, 267, 299, 381, 498, 548
SfaNI	GCATC	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	196
Sse9I	AATT	4 cut(s)	77, 267, 409, 444
SseBI	AGGCCT	1 cut(s)	536
SsiI	CCGC	3 cut(s)	68, 71, 168
StuI	AGGCCT	1 cut(s)	536
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	156, 457
TaiI	ACGT	2 cut(s)	381, 498
TaqI	TCGA	2 cut(s)	104, 235
TasI	AATT	4 cut(s)	77, 267, 409, 444
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	4 cut(s)	232, 339, 367, 392
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	3 cut(s)	6, 139, 165
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	1 cut(s)	180
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.