Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8284495.1

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 856

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8284495.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ccccccgatcgccaccctcaccgccaccacctccgccggcacaattccttacttacccgacagcgtcatcgaacaaatcctctccttccttcccatcaaactcgccgctcaggcaaccgccgtttcgaagcagtgggcggcgtttcgaccagggcgacccctccgattccgacgaccctgccaagttccaaagattcctccgattcttggagaattgcttgatacggtgccagaaacagaggagcttagagaagctgacatacagtctcgccggagacgataaggacaagattgacaagtgtgtgacgtttgcaattgagagatgtgtcaaagagttagagctctgtttcgtcgaagccgaaactagagttggagttggtgatgatcctataacactactgtcactgaaaaccatgtccctcaaagaggttgaattcgatgacgaaattgatcttgagatcttagttcatggttgccctcatctcgagcgcttatcattaaatctgtgtgatcttggctacacgcccccggatcttcacatttcgtgttcgagtcttaaatcattggaaattatgaact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

192

Amino Acids

21.53

Weight (kDa)

5.15

Isoelectric Point (pI)

65.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccBSI	CCGCTC	1 cut(s)	108
AciI	CCGC	5 cut(s)	22, 34, 106, 118, 138
AclWI	GGATC	2 cut(s)	379, 539
AcsI	RAATTY	1 cut(s)	433
AfeI	AGCGCT	1 cut(s)	490
AfiI	CCNNNNNNNGG	2 cut(s)	207, 426
AgsI	TTSAA	1 cut(s)	433
AhdI	GACNNNNNGTC	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AluBI	AGCT	3 cut(s)	245, 255, 342
AluI	AGCT	3 cut(s)	245, 255, 342
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	2 cut(s)	269, 271
AlwI	GGATC	2 cut(s)	379, 539
Ama87I	CYCGRG	1 cut(s)	484
Aor51HI	AGCGCT	1 cut(s)	490
ApoI	RAATTY	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	491
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	2 cut(s)	11, 391
AsuII	TTCGAA	1 cut(s)	126
AvaI	CYCGRG	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	344
BarI	GAAGNNNNNNTAC	2 cut(s)	244, 276
Bbv12I	GWGCWC	1 cut(s)	344
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	1 cut(s)	105
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	529
BcoDI	GTCTC	2 cut(s)	269, 271
BfaI	CTAG	1 cut(s)	365
BfoI	RGCGCY	1 cut(s)	492
BglI	GCCNNNNNGGC	1 cut(s)	111
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	2 cut(s)	106, 139
BlsI	GCNGC	2 cut(s)	107, 140
Bme1390I	CCNGG	2 cut(s)	151, 529
BmeRI	GACNNNNNGTC	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	484
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	151, 529
Bpu10I	CCTNAGC	1 cut(s)	109
Bpu14I	TTCGAA	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	529
BsaJI	CCNNGG	2 cut(s)	150, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 426
Bse118I	RCCGGY	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	150, 527
BseLI	CCNNNNNNNGG	2 cut(s)	207, 426
BseMII	CTCAG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	3 cut(s)	37, 272, 529
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	2 cut(s)	207, 426
BsmAI	GTCTC	2 cut(s)	269, 271
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	402
BsoBI	CYCGRG	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	6 cut(s)	7, 384, 450, 458, 510, 531
BspACI	CCGC	5 cut(s)	22, 34, 106, 118, 138
BspCNI	CTCAG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	2 cut(s)	379, 539
BspT104I	TTCGAA	1 cut(s)	126
BspT107I	GGYRCC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	150, 527
BssMI	GATC	6 cut(s)	7, 384, 450, 458, 510, 531
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	3 cut(s)	227, 265, 401
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	109, 246, 462
BstENI	CCTNNNNNAGG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	6 cut(s)	10, 387, 453, 461, 513, 534
BstMAI	GTCTC	2 cut(s)	269, 271
BstMBI	GATC	6 cut(s)	7, 384, 450, 458, 510, 531
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	149, 527
BstX2I	RGATCY	2 cut(s)	458, 531
BstYI	RGATCY	2 cut(s)	458, 531
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 403
Cac8I	GCNNGC	1 cut(s)	38
CfoI	GCGC	1 cut(s)	491
Cfr10I	RCCGGY	1 cut(s)	36
CseI	GACGC	1 cut(s)	53
CviAII	CATG	2 cut(s)	414, 469
CviJI	RGCY	5 cut(s)	245, 255, 342, 358, 518
CviKI_1	RGCY	5 cut(s)	245, 255, 342, 358, 518
DdeI	CTNAG	3 cut(s)	109, 246, 462
DpnI	GATC	6 cut(s)	9, 386, 452, 460, 512, 533
DpnII	GATC	6 cut(s)	7, 384, 450, 458, 510, 531
DriI	GACNNNNNGTC	1 cut(s)	263
Eam1105I	GACNNNNNGTC	1 cut(s)	263
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	344
Eco47III	AGCGCT	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	484
EcoICRI	GAGCTC	1 cut(s)	342
EcoNI	CCTNNNNNAGG	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	344
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	2 cut(s)	417, 472
FaiI	YATR	5 cut(s)	261, 391, 415, 470, 574
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	2 cut(s)	413, 468
Fnu4HI	GCNGC	2 cut(s)	106, 139
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	106, 139
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	2 cut(s)	106, 139
HaeII	RGCGCY	1 cut(s)	492
HapII	CCGG	3 cut(s)	37, 272, 529
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	491
Hin1II	CATG	2 cut(s)	417, 472
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HinfI	GANTC	4 cut(s)	166, 194, 203, 552
HpaII	CCGG	3 cut(s)	37, 272, 529
HphI	GGTGA	2 cut(s)	11, 391
Hpy188I	TCNGA	3 cut(s)	165, 171, 202
Hpy188III	TCNNGA	2 cut(s)	454, 484
Hpy99I	CGWCG	2 cut(s)	175, 355
HpyAV	CCTTC	2 cut(s)	95, 99
HpyCH4III	ACNGT	3 cut(s)	227, 265, 401
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	3 cut(s)	109, 246, 462
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	417, 472
HspAI	GCGC	1 cut(s)	489
KroI	GCCGGC	1 cut(s)	36
KroNI	GCCGGC	1 cut(s)	38
Kzo9I	GATC	6 cut(s)	7, 384, 450, 458, 510, 531
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	8 cut(s)	50, 96, 136, 163, 191, 244, 285, 542
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	2 cut(s)	303, 401
MalI	GATC	6 cut(s)	9, 386, 452, 460, 512, 533
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	6 cut(s)	7, 384, 450, 458, 510, 531
MboII	GAAGA	1 cut(s)	526
MfeI	CAATTG	1 cut(s)	314
MflI	RGATCY	2 cut(s)	458, 531
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	6 cut(s)	43, 213, 314, 433, 446, 569
MlyI	GAGTC	1 cut(s)	561
MmeI	TCCRAC	2 cut(s)	194, 351
MnlI	CCTC	9 cut(s)	27, 41, 90, 171, 208, 233, 420, 430, 488
MroNI	GCCGGC	1 cut(s)	36
MseI	TTAA	2 cut(s)	499, 557
MspI	CCGG	3 cut(s)	37, 272, 529
MspR9I	CCNGG	2 cut(s)	151, 529
MunI	CAATTG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	111
NaeI	GCCGGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	529
NdeII	GATC	6 cut(s)	7, 384, 450, 458, 510, 531
NgoMIV	GCCGGC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	417, 472
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	2 cut(s)	303, 401
NspV	TTCGAA	1 cut(s)	126
PaeR7I	CTCGAG	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	3 cut(s)	152, 275, 356
PdiI	GCCGGC	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	166, 194, 203
PflFI	GACNNNGTC	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	107, 140
Ple19I	CGATCG	1 cut(s)	10
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	229
PsuI	RGATCY	2 cut(s)	458, 531
PsyI	GACNNNGTC	1 cut(s)	63
PvuI	CGATCG	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	499, 557
SatI	GCNGC	2 cut(s)	106, 139
Sau3AI	GATC	6 cut(s)	7, 384, 450, 458, 510, 531
SchI	GAGTC	1 cut(s)	561
ScrFI	CCNGG	2 cut(s)	151, 529
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	6 cut(s)	33, 247, 257, 310, 344, 431
Sfr274I	CTCGAG	1 cut(s)	484
SfuI	TTCGAA	1 cut(s)	126
SlaI	CTCGAG	1 cut(s)	484
SmlI	CTYRAG	2 cut(s)	454, 484
SmoI	CTYRAG	2 cut(s)	454, 484
Sse9I	AATT	6 cut(s)	43, 213, 314, 433, 446, 569
SsiI	CCGC	5 cut(s)	22, 34, 106, 118, 138
SspMI	CTAG	1 cut(s)	365
SstI	GAGCTC	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	149, 527
TaaI	ACNGT	3 cut(s)	227, 265, 401
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	7 cut(s)	70, 126, 146, 353, 437, 485, 550
TasI	AATT	6 cut(s)	43, 213, 314, 433, 446, 569
TauI	GCSGC	2 cut(s)	108, 141
TfiI	GAWTC	3 cut(s)	166, 194, 203
Tru1I	TTAA	2 cut(s)	499, 557
Tru9I	TTAA	2 cut(s)	499, 557
TscAI	CASTG	2 cut(s)	138, 410
TseFI	GTSAC	2 cut(s)	303, 401
Tsp45I	GTSAC	2 cut(s)	303, 401
TspDTI	ATGAA	1 cut(s)	457
TspRI	CASTG	2 cut(s)	138, 410
Tth111I	GACNNNGTC	1 cut(s)	63
XagI	CCTNNNNNAGG	1 cut(s)	424
XapI	RAATTY	1 cut(s)	433
XhoI	CTCGAG	1 cut(s)	484
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.