Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Forward (+)

4964633 .. 4967315

Gene Structure 2683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTCCCTCAAGGACGTAACATTTTTAGATGATGAGCAGGACACAGCCATCTGTGCCTTCCCCAGCTTAGTTTCGGGGAGTCCTTGCATTGAGCATTTCTTGAAACATGTGCACATCTTTTGCAAGGGTTTGAAAAGGCTTCTGTCGCATAATTGCCTACAAAGTATGGAGAACTCGTTTTATACTCCAAATCTAGAGTCTTTTGAGTTTGGTGGATATCTGAAGGCCAAGATCCATTTTACAGAAGCTCCAGCGAATTTAGTAAACTCTACAATCAGAGTTTCGGAGAACTTATGGCCCATTGAATATTATTCTGCTATGAGAGATTTTCTTGGAAGTTTCGACTGCTCTAAAAAAGTGAAGATACATATTGAAGAGCCTGAGGGTGTCATAATACCAGAACATTGCAGAACAGAATTGTCTCCCCCATTATCTAGTATTAAGCAGCTGCAGCTATACTTTTCTCCTTCACTGGGGGAGAGAGAATATTGTTTGAGACAATCATTGATTTGGATGGCACCATCTGCTGAAATTCTACCATTTCTAGATCACGATGACGATGATGATTCTGATGATTTTGACGATGATGATTACAATATTGTTGATGATGATAATGGCATTGATGATGACAATGGGAATGTTGACAATGAAGACGGCGACGAAGCGTATTCAGCGCACCCGTCCATCTCCGCCGTCCATTTGACGCGGACTTTTGACTTTTTCAAAATGGACGGCGGAGATGGACGGGGAGGTGACCTCATCCAGCGAATTGGAATTCAAGCTGTGATCTCCAGTCTTTTAATTTTCCAGTTTCAAGAGGGTCTAACAGGACCGAGATCTAAGCTCGAGCAATACAGAACTGGAGAAGCCATTAGCAAAGCAAGGGATCAGTCGGATGTCGGATCACTGATTGAGAATTTGAACCTCCTGGCTGAAGCAAAAAGCACAGAGAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

320

Amino Acids

35.78

Weight (kDa)

4.49

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AccII	CGCG	1 cut(s)	706
AciI	CCGC	3 cut(s)	690, 706, 735
AclWI	GGATC	3 cut(s)	226, 894, 910
AcsI	RAATTY	4 cut(s)	256, 531, 774, 916
AcuI	CTGAAG	2 cut(s)	242, 954
AfiI	CCNNNNNNNGG	1 cut(s)	473
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	8 cut(s)	103, 133, 305, 374, 724, 779, 815, 922
AjnI	CCWGG	1 cut(s)	927
AluBI	AGCT	7 cut(s)	66, 248, 448, 454, 782, 844, 956
AluI	AGCT	7 cut(s)	66, 248, 448, 454, 782, 844, 956
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	2 cut(s)	426, 490
Alw44I	GTGCAC	1 cut(s)	110
AlwI	GGATC	3 cut(s)	226, 894, 910
Ama87I	CYCGRG	1 cut(s)	845
AoxI	GGCC	2 cut(s)	225, 296
ApaLI	GTGCAC	1 cut(s)	110
ApeKI	GCWGC	3 cut(s)	445, 448, 451
ApoI	RAATTY	4 cut(s)	256, 531, 774, 916
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	2 cut(s)	297, 830
AsuHPI	GGTGA	1 cut(s)	764
AvaI	CYCGRG	1 cut(s)	845
AvaII	GGWCC	1 cut(s)	830
AxyI	CCTNAGG	1 cut(s)	381
BaeGI	GKGCMC	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	435, 457, 463
BccI	CCATC	5 cut(s)	56, 508, 529, 692, 734
BceAI	ACGGC	3 cut(s)	670, 677, 748
BciT130I	CCWGG	1 cut(s)	929
BcoDI	GTCTC	2 cut(s)	426, 490
BfaI	CTAG	3 cut(s)	194, 435, 545
BfmI	CTRYAG	1 cut(s)	449
BglII	AGATCT	1 cut(s)	836
BisI	GCNGC	3 cut(s)	446, 449, 452
BlsI	GCNGC	3 cut(s)	447, 450, 453
Bme1390I	CCNGG	1 cut(s)	929
Bme18I	GGWCC	1 cut(s)	830
BmeT110I	CYCGRG	1 cut(s)	845
BmgT120I	GGNCC	2 cut(s)	297, 830
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	929
BmrI	ACTGGG	1 cut(s)	482
BmuI	ACTGGG	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	657
BplI	GAGNNNNNCTC	2 cut(s)	741, 773
BpmI	CTGGAG	3 cut(s)	234, 775, 882
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 232, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse1I	ACTGG	4 cut(s)	477, 792, 808, 865
Bse21I	CCTNAGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	929
BseGI	GGATG	3 cut(s)	519, 759, 901
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	4 cut(s)	477, 792, 808, 865
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	435, 457, 463
BseYI	CCCAGC	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	706
BshFI	GGCC	2 cut(s)	227, 298
BshNI	GGYRCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	845
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	2 cut(s)	426, 490
BsnI	GGCC	2 cut(s)	227, 298
BsoBI	CYCGRG	1 cut(s)	845
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	6 cut(s)	231, 547, 786, 836, 886, 902
BspACI	CCGC	3 cut(s)	690, 706, 735
BspANI	GGCC	2 cut(s)	227, 298
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	706
BspLI	GGNNCC	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	453
BspPI	GGATC	3 cut(s)	226, 894, 910
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	403
BsrI	ACTGG	4 cut(s)	477, 792, 808, 865
BssMI	GATC	6 cut(s)	231, 547, 786, 836, 886, 902
Bst2UI	CCWGG	1 cut(s)	929
Bst6I	CTCTTC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstDEI	CTNAG	3 cut(s)	67, 381, 840
BstEII	GGTNACC	1 cut(s)	752
BstF5I	GGATG	3 cut(s)	519, 759, 901
BstFNI	CGCG	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	6 cut(s)	234, 550, 789, 839, 889, 905
BstMAI	GTCTC	2 cut(s)	426, 490
BstMBI	GATC	6 cut(s)	231, 547, 786, 836, 886, 902
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 145, 451, 524, 671
BstNI	CCWGG	1 cut(s)	929
BstNSI	RCATGY	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	927
BstSFI	CTRYAG	1 cut(s)	449
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	706
BstV1I	GCAGC	3 cut(s)	435, 457, 463
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	2 cut(s)	231, 836
BstXI	CCANNNNNNTGG	1 cut(s)	770
BstYI	RGATCY	2 cut(s)	231, 836
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	227, 298
BtsCI	GGATG	3 cut(s)	519, 759, 901
BtsIMutI	CAGTG	2 cut(s)	470, 905
CfoI	GCGC	1 cut(s)	676
Cfr13I	GGNCC	2 cut(s)	297, 830
CseI	GACGC	1 cut(s)	712
CviAII	CATG	1 cut(s)	107
DdeI	CTNAG	3 cut(s)	67, 381, 840
DpnI	GATC	6 cut(s)	233, 549, 788, 838, 888, 904
DpnII	GATC	6 cut(s)	231, 547, 786, 836, 886, 902
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	2 cut(s)	679, 750
Eco32I	GATATC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	830
Eco57I	CTGAAG	2 cut(s)	242, 954
Eco81I	CCTNAGG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	845
Eco91I	GGTNACC	1 cut(s)	752
EcoO65I	GGTNACC	1 cut(s)	752
EcoRI	GAATTC	1 cut(s)	774
EcoRII	CCWGG	1 cut(s)	927
EcoRV	GATATC	1 cut(s)	218
FaeI	CATG	1 cut(s)	110
FaiI	YATR	9 cut(s)	108, 150, 167, 183, 295, 320, 369, 392, 457
FatI	CATG	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	446, 449, 452
FokI	GGATG	3 cut(s)	526, 746, 908
Fsp4HI	GCNGC	3 cut(s)	446, 449, 452
FspBI	CTAG	3 cut(s)	194, 435, 545
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	3 cut(s)	446, 449, 452
GsaI	CCCAGC	1 cut(s)	66
GsuI	CTGGAG	3 cut(s)	234, 775, 882
HaeIII	GGCC	2 cut(s)	227, 298
HgaI	GACGC	1 cut(s)	712
HhaI	GCGC	1 cut(s)	676
Hin1II	CATG	1 cut(s)	110
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HindIII	AAGCTT	1 cut(s)	954
HinfI	GANTC	3 cut(s)	79, 197, 566
HphI	GGTGA	1 cut(s)	764
Hpy166II	GTNNAC	3 cut(s)	112, 265, 643
Hpy188I	TCNGA	6 cut(s)	222, 278, 286, 571, 895, 902
Hpy188III	TCNNGA	5 cut(s)	100, 194, 545, 551, 815
Hpy8I	GTNNAC	3 cut(s)	112, 265, 643
Hpy99I	CGWCG	1 cut(s)	662
HpyAV	CCTTC	3 cut(s)	67, 217, 477
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	5 cut(s)	87, 112, 123, 408, 451
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 145, 451, 524, 671
HpyF3I	CTNAG	3 cut(s)	67, 381, 840
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	110
HspAI	GCGC	1 cut(s)	674
Kzo9I	GATC	6 cut(s)	231, 547, 786, 836, 886, 902
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	3 cut(s)	435, 457, 463
MaeI	CTAG	3 cut(s)	194, 435, 545
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	16, 752
MalI	GATC	6 cut(s)	233, 549, 788, 838, 888, 904
MboI	GATC	6 cut(s)	231, 547, 786, 836, 886, 902
MboII	GAAGA	3 cut(s)	373, 386, 662
MflI	RGATCY	2 cut(s)	231, 836
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	8 cut(s)	151, 256, 416, 531, 768, 774, 801, 916
MlyI	GAGTC	2 cut(s)	88, 206
MmeI	TCCRAC	2 cut(s)	873, 880
MnlI	CCTC	6 cut(s)	17, 376, 743, 767, 811, 935
MseI	TTAA	3 cut(s)	441, 800, 958
MspA1I	CMGCKG	1 cut(s)	448
MspR9I	CCNGG	1 cut(s)	929
MvaI	CCWGG	1 cut(s)	929
MvnI	CGCG	1 cut(s)	706
MwoI	GCNNNNNNNGC	5 cut(s)	53, 145, 451, 524, 671
NdeII	GATC	6 cut(s)	231, 547, 786, 836, 886, 902
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	752
NspI	RCATGY	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	845
PciI	ACATGT	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	566
PkrI	GCNGC	3 cut(s)	447, 450, 453
PleI	GAGTC	2 cut(s)	87, 205
PpsI	GAGTC	2 cut(s)	87, 205
PscI	ACATGT	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	927
PspEI	GGTNACC	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	927
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	2 cut(s)	297, 830
PspXI	VCTCGAGB	1 cut(s)	845
PstI	CTGCAG	1 cut(s)	453
PsuI	RGATCY	2 cut(s)	231, 836
PvuII	CAGCTG	1 cut(s)	448
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	3 cut(s)	441, 800, 958
SatI	GCNGC	3 cut(s)	446, 449, 452
Sau3AI	GATC	6 cut(s)	231, 547, 786, 836, 886, 902
Sau96I	GGNCC	2 cut(s)	297, 830
SchI	GAGTC	2 cut(s)	88, 206
ScrFI	CCNGG	1 cut(s)	929
SduI	GDGCHC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	449
Sfr274I	CTCGAG	1 cut(s)	845
SinI	GGWCC	1 cut(s)	830
SlaI	CTCGAG	1 cut(s)	845
SmlI	CTYRAG	2 cut(s)	8, 845
SmoI	CTYRAG	2 cut(s)	8, 845
Sse9I	AATT	8 cut(s)	151, 256, 416, 531, 768, 774, 801, 916
SsiI	CCGC	3 cut(s)	690, 706, 735
SspI	AATATT	3 cut(s)	308, 488, 598
SspMI	CTAG	3 cut(s)	194, 435, 545
StyD4I	CCNGG	1 cut(s)	927
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	342, 846
TaqII	GACCGA	1 cut(s)	847
TasI	AATT	8 cut(s)	151, 256, 416, 531, 768, 774, 801, 916
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	3 cut(s)	441, 800, 958
Tru9I	TTAA	3 cut(s)	441, 800, 958
TscAI	CASTG	2 cut(s)	477, 912
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	3 cut(s)	445, 448, 451
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	1 cut(s)	663
TspRI	CASTG	2 cut(s)	477, 912
VneI	GTGCAC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	830
XapI	RAATTY	4 cut(s)	256, 531, 774, 916
XbaI	TCTAGA	2 cut(s)	193, 544
XceI	RCATGY	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	845
XspI	CTAG	3 cut(s)	194, 435, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.