Rroxscaffold_7G00208640

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
58771103 .. 58773009
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208640.1

Sequence Viewer

Length: 1395 bp
ATGAGCACAGAGAATGATCGGAACCGCCAAACCGCCGCAACCAGCAACGCCGCCACAATTCCTTACTTACCTGACAACGTCATCGAAAAAATCCTGTCCTTCCTTCCGATCAATCTAGCGGCCCAGGCGAACACCGTCTCGAAGCAATGGGCAGCCCTGTGGCCTTCCTTCCCAGTAATCGATCTCGACGAGGCCGATCCGATCAATTGCGAACTCTATGTCGAACCTGGACGTTTCCTCAGCTTCTTGCACGGTTCTCTCAGACGATGCGGGGATCAGAGGCTCTTGGACAAGTTGAGGATTCGAGCCAACCTGCGATGCGCCTACGTGTTGGTAACAGAGTGGATTGATTTTGCAATTGATAGGTGTGTTAAAGAGTTAGATCTTCGAAATTTGGGTGAGCATTGTGAGTACCTGATAGCTCATGCCGTTTTAACTTTGAAATCTTTAACCAGTCTGAATTTGGAGAATGTGAGAGTTTATGCAAGTTCGGGAATTAACGGTCCTGTTTGCCTACCCTTATTGAAAACCATGTCCCTCACAGAGGTGGAATTTTTCGACGATGAGGAGGACTGGGCCATTTGCGCCGTCCCCAGCTTAATTTCGGGGTGTCCTAGCATGGAGCAATTGTCAATTAAGAAATGTAAGCTTGGCTACTCTACCATGGAGCTTGAAATTTCAAGTTACAGTCTCAAATCCTTGGAAATTATGCGTTGCCATTGTATGAATTTGGTAGTTACTGCCGAGAATCTCGAGTCTTTTACATTCTATTCGGATTGTACCTGTCCTTACCATAAGACTATGTACTTGTGGGAATGTGATAACTTGAAACATGTGGACATCTCTTGTTTGGGGTTGAAACAGCTTCTACTGCATACATGCCTAGAAACTATGGAGAACTCGTTTCACACTCCAAATCTAGAGGCTTTTGAGTTTAGCGGATATCTGAAGGCCAAGGTCCATTTTGTGGATGCTCCATCAAAGTTATTAAAGGCTACAATCAGAGTTTGGGAGACCTCATGGCCCATTGAATATTATTCTGCTATGAGAGATTTTCTTGAAAGTTTCAATTGCTCCAAAAAAGTGAAGCTACATATCGAGGATGCCGAGGGTGTCATAATACCAGAACATCGGAGAATGGAATGGTCTTCCCCATTACCTAGTATTAAGCAGCTGCAGCTATACTTTTCTGCTCCATTGGGGGACAGAGAATATTGTTTGAGACCTTCATTGATTTGGATGGCACCATCTGCTGAGATTCTACCATTTCTAGATAATAATGATTATGATGATGATGAGGATGACAATGATGATGACTATGATGACAACGATGACGATGATGATGATGATAATGATGACAATGATGACGATGGTGATGACCACAACGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

464

Amino Acids

53.1

Weight (kDa)

4.46

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 107 - 260 2.4e-07 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 113 - 289 1.1e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 1243
AccB7I CCANNNNNTGG 1 cut(s) 967
AciI CCGC 7 cut(s) 25, 33, 36, 51, 119, 270, 939
AclWI GGATC 2 cut(s) 191, 282
AcsI RAATTY 5 cut(s) 391, 460, 551, 675, 727
AcuI CTGAAG 1 cut(s) 968
AfaI GTAC 3 cut(s) 413, 781, 806
AfiI CCNNNNNNNGG 2 cut(s) 544, 967
AflIII ACRYGT 2 cut(s) 327, 832
AgsI TTSAA 9 cut(s) 442, 526, 674, 681, 829, 859, 1031, 1061, 1069
AjnI CCWGG 2 cut(s) 123, 226
AleI CACNNNNGTG 1 cut(s) 545
AluBI AGCT 9 cut(s) 243, 422, 597, 649, 670, 865, 1090, 1174, 1180
AluI AGCT 9 cut(s) 243, 422, 597, 649, 670, 865, 1090, 1174, 1180
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 4 cut(s) 142, 695, 1007, 1216
AlwI GGATC 2 cut(s) 191, 282
Ama87I CYCGRG 1 cut(s) 752
AoxI GGCC 6 cut(s) 120, 161, 192, 576, 951, 1022
ApeKI GCWGC 4 cut(s) 152, 1171, 1174, 1177
ApoI RAATTY 5 cut(s) 391, 460, 551, 675, 727
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
AspLEI GCGC 2 cut(s) 323, 587
AspS9I GGNCC 5 cut(s) 121, 503, 576, 958, 1023
AsuHPI GGTGA 2 cut(s) 410, 1385
AsuII TTCGAA 1 cut(s) 388
AvaI CYCGRG 1 cut(s) 752
AvaII GGWCC 2 cut(s) 503, 958
BanI GGYRCC 1 cut(s) 1243
BbsI GAAGAC 1 cut(s) 1140
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 239
BbvI GCAGC 4 cut(s) 164, 1161, 1183, 1189
BccI CCATC 4 cut(s) 985, 1234, 1255, 1364
BceAI ACGGC 2 cut(s) 413, 572
BciT130I CCWGG 2 cut(s) 125, 228
BcoDI GTCTC 4 cut(s) 142, 695, 1007, 1216
BfaI CTAG 6 cut(s) 116, 615, 884, 920, 1161, 1271
BfmI CTRYAG 1 cut(s) 1175
BfuAI ACCTGC 1 cut(s) 321
BglII AGATCT 1 cut(s) 382
BisI GCNGC 7 cut(s) 36, 51, 120, 153, 1172, 1175, 1178
BlsI GCNGC 7 cut(s) 37, 52, 121, 154, 1173, 1176, 1179
Bme1390I CCNGG 2 cut(s) 125, 228
Bme18I GGWCC 2 cut(s) 503, 958
BmeT110I CYCGRG 1 cut(s) 752
BmgT120I GGNCC 5 cut(s) 121, 503, 576, 958, 1023
BmiI GGNNCC 2 cut(s) 23, 1245
BmrFI CCNGG 2 cut(s) 125, 228
BmrI ACTGGG 2 cut(s) 167, 583
BmsI GCATC 4 cut(s) 257, 308, 961, 1093
BmuI ACTGGG 2 cut(s) 167, 583
BpiI GAAGAC 1 cut(s) 1140
Bpu10I CCTNAGC 1 cut(s) 239
Bpu14I TTCGAA 1 cut(s) 388
Bsa29I ATCGAT 1 cut(s) 180
BsaAI YACGTR 1 cut(s) 328
BsaI GGTCTC 2 cut(s) 1007, 1216
BsaJI CCNNGG 5 cut(s) 123, 663, 699, 954, 1107
BsaXI ACNNNNNCTCC 4 cut(s) 614, 644, 887, 917
Bsc4I CCNNNNNNNGG 2 cut(s) 544, 967
Bse1I ACTGG 3 cut(s) 173, 453, 578
Bse3DI GCAATG 1 cut(s) 152
BseBI CCWGG 2 cut(s) 125, 228
BseCI ATCGAT 1 cut(s) 180
BseDI CCNNGG 5 cut(s) 123, 663, 699, 954, 1107
BseGI GGATG 4 cut(s) 976, 1108, 1245, 1306
BseLI CCNNNNNNNGG 2 cut(s) 544, 967
BseMI GCAATG 1 cut(s) 152
BseMII CTCAG 3 cut(s) 253, 274, 1245
BseNI ACTGG 3 cut(s) 173, 453, 578
BseRI GAGGAG 1 cut(s) 581
BseXI GCAGC 4 cut(s) 164, 1161, 1183, 1189
BseYI CCCAGC 1 cut(s) 593
BshFI GGCC 6 cut(s) 122, 163, 194, 578, 953, 1024
BshNI GGYRCC 1 cut(s) 1243
BshVI ATCGAT 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 752
BslFI GGGAC 3 cut(s) 520, 575, 1217
BslI CCNNNNNNNGG 2 cut(s) 544, 967
BsmAI GTCTC 4 cut(s) 142, 695, 1007, 1216
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 3 cut(s) 520, 575, 1217
BsnI GGCC 6 cut(s) 122, 163, 194, 578, 953, 1024
Bso31I GGTCTC 2 cut(s) 1007, 1216
BsoBI CYCGRG 1 cut(s) 752
Bsp119I TTCGAA 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 7 cut(s) 16, 108, 181, 196, 201, 274, 382
Bsp19I CCATGG 1 cut(s) 663
BspACI CCGC 7 cut(s) 25, 33, 36, 51, 119, 270, 939
BspANI GGCC 6 cut(s) 122, 163, 194, 578, 953, 1024
BspCNI CTCAG 3 cut(s) 252, 273, 1246
BspDI ATCGAT 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 23, 1245
BspMAI CTGCAG 1 cut(s) 1179
BspMI ACCTGC 1 cut(s) 321
BspPI GGATC 2 cut(s) 191, 282
BspT104I TTCGAA 1 cut(s) 388
BspT107I GGYRCC 1 cut(s) 1243
BspTNI GGTCTC 2 cut(s) 1007, 1216
BsrDI GCAATG 1 cut(s) 152
BsrI ACTGG 3 cut(s) 173, 453, 578
BssECI CCNNGG 5 cut(s) 123, 663, 699, 954, 1107
BssMI GATC 7 cut(s) 16, 108, 181, 196, 201, 274, 382
BssT1I CCWWGG 3 cut(s) 663, 699, 954
Bst2UI CCWGG 2 cut(s) 125, 228
Bst4CI ACNGT 4 cut(s) 136, 254, 503, 689
BstAPI GCANNNNNTGC 1 cut(s) 1250
BstBAI YACGTR 1 cut(s) 328
BstBI TTCGAA 1 cut(s) 388
BstDEI CTNAG 3 cut(s) 239, 260, 1254
BstDSI CCRYGG 1 cut(s) 663
BstENI CCTNNNNNAGG 1 cut(s) 542
BstF5I GGATG 4 cut(s) 976, 1108, 1245, 1306
BstHHI GCGC 2 cut(s) 323, 587
BstKTI GATC 7 cut(s) 19, 111, 184, 199, 204, 277, 385
BstMAI GTCTC 4 cut(s) 142, 695, 1007, 1216
BstMBI GATC 7 cut(s) 16, 108, 181, 196, 201, 274, 382
BstMWI GCNNNNNNNGC 5 cut(s) 125, 584, 871, 1177, 1250
BstNI CCWGG 2 cut(s) 125, 228
BstNSI RCATGY 2 cut(s) 836, 882
BstSCI CCNGG 2 cut(s) 123, 226
BstSFI CTRYAG 1 cut(s) 1175
BstV1I GCAGC 4 cut(s) 164, 1161, 1183, 1189
BstV2I GAAGAC 1 cut(s) 1140
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
Bsu15I ATCGAT 1 cut(s) 180
BsuRI GGCC 6 cut(s) 122, 163, 194, 578, 953, 1024
BsuTUI ATCGAT 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 663
BtgZI GCGATG 1 cut(s) 331
BtsCI GGATG 4 cut(s) 976, 1108, 1245, 1306
BveI ACCTGC 1 cut(s) 321
CfoI GCGC 2 cut(s) 323, 587
Cfr13I GGNCC 5 cut(s) 121, 503, 576, 958, 1023
ClaI ATCGAT 1 cut(s) 180
Csp6I GTAC 3 cut(s) 412, 780, 805
CviAII CATG 7 cut(s) 425, 532, 619, 664, 833, 879, 1020
CviQI GTAC 3 cut(s) 412, 780, 805
DdeI CTNAG 3 cut(s) 239, 260, 1254
DpnI GATC 7 cut(s) 18, 110, 183, 198, 203, 276, 384
DpnII GATC 7 cut(s) 16, 108, 181, 196, 201, 274, 382
Eco130I CCWWGG 3 cut(s) 663, 699, 954
Eco31I GGTCTC 2 cut(s) 1007, 1216
Eco32I GATATC 1 cut(s) 944
Eco47I GGWCC 2 cut(s) 503, 958
Eco57I CTGAAG 1 cut(s) 968
Eco88I CYCGRG 1 cut(s) 752
EcoNI CCTNNNNNAGG 1 cut(s) 542
EcoRII CCWGG 2 cut(s) 123, 226
EcoRV GATATC 1 cut(s) 944
EcoT14I CCWWGG 3 cut(s) 663, 699, 954
ErhI CCWWGG 3 cut(s) 663, 699, 954
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 7 cut(s) 428, 535, 622, 667, 836, 882, 1023
FaqI GGGAC 3 cut(s) 520, 575, 1217
FatI CATG 7 cut(s) 424, 531, 618, 663, 832, 878, 1019
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 7 cut(s) 36, 51, 120, 153, 1172, 1175, 1178
FokI GGATG 4 cut(s) 983, 1115, 1252, 1313
Fsp4HI GCNGC 7 cut(s) 36, 51, 120, 153, 1172, 1175, 1178
FspBI CTAG 6 cut(s) 116, 615, 884, 920, 1161, 1271
GlaI GCGC 2 cut(s) 322, 586
GluI GCNGC 7 cut(s) 36, 51, 120, 153, 1172, 1175, 1178
GsaI CCCAGC 1 cut(s) 597
HaeIII GGCC 6 cut(s) 122, 163, 194, 578, 953, 1024
HhaI GCGC 2 cut(s) 323, 587
Hin1II CATG 7 cut(s) 428, 535, 622, 667, 836, 882, 1023
Hin6I GCGC 2 cut(s) 321, 585
HinP1I GCGC 2 cut(s) 321, 585
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 4 cut(s) 301, 748, 755, 1258
HphI GGTGA 2 cut(s) 410, 1385
Hpy166II GTNNAC 1 cut(s) 838
Hpy188III TCNNGA 7 cut(s) 139, 185, 492, 752, 920, 1058, 1271
Hpy8I GTNNAC 1 cut(s) 838
Hpy99I CGWCG 2 cut(s) 191, 563
HpyAV CCTTC 6 cut(s) 109, 113, 174, 178, 943, 1236
HpyCH4III ACNGT 4 cut(s) 136, 254, 503, 689
HpyCH4IV ACGT 3 cut(s) 78, 232, 327
HpyCH4V TGCA 5 cut(s) 250, 356, 485, 874, 1177
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 584, 871, 1177, 1250
HpyF3I CTNAG 3 cut(s) 239, 260, 1254
HpySE526I ACGT 3 cut(s) 78, 232, 327
Hsp92II CATG 7 cut(s) 428, 535, 622, 667, 836, 882, 1023
HspAI GCGC 2 cut(s) 321, 585
Kzo9I GATC 7 cut(s) 16, 108, 181, 196, 201, 274, 382
LmnI GCTCC 5 cut(s) 622, 667, 979, 1079, 1198
Lsp1109I GCAGC 4 cut(s) 164, 1161, 1183, 1189
LweI GCATC 4 cut(s) 257, 308, 961, 1093
MaeI CTAG 6 cut(s) 116, 615, 884, 920, 1161, 1271
MaeII ACGT 3 cut(s) 78, 232, 327
MaeIII GTNAC 3 cut(s) 334, 683, 736
MalI GATC 7 cut(s) 18, 110, 183, 198, 203, 276, 384
MboI GATC 7 cut(s) 16, 108, 181, 196, 201, 274, 382
MboII GAAGA 2 cut(s) 377, 1140
MfeI CAATTG 4 cut(s) 205, 357, 626, 1069
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 1 cut(s) 764
MseI TTAA 8 cut(s) 372, 434, 449, 498, 599, 636, 989, 1167
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 1174
MspR9I CCNGG 2 cut(s) 125, 228
MunI CAATTG 4 cut(s) 205, 357, 626, 1069
MvaI CCWGG 2 cut(s) 125, 228
MwoI GCNNNNNNNGC 5 cut(s) 125, 584, 871, 1177, 1250
NcoI CCATGG 1 cut(s) 663
NdeII GATC 7 cut(s) 16, 108, 181, 196, 201, 274, 382
NlaIII CATG 7 cut(s) 428, 535, 622, 667, 836, 882, 1023
NlaIV GGNNCC 2 cut(s) 23, 1245
NmeAIII GCCGAG 2 cut(s) 769, 1132
NspI RCATGY 2 cut(s) 836, 882
NspV TTCGAA 1 cut(s) 388
OliI CACNNNNGTG 1 cut(s) 545
PaeR7I CTCGAG 1 cut(s) 752
PciI ACATGT 1 cut(s) 832
PcsI WCGNNNNNNNCGW 3 cut(s) 186, 192, 1104
PfeI GAWTC 3 cut(s) 301, 748, 1258
PflFI GACNNNGTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 967
PkrI GCNGC 7 cut(s) 37, 52, 121, 154, 1173, 1176, 1179
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
Ppu21I YACGTR 1 cut(s) 328
PscI ACATGT 1 cut(s) 832
Psp6I CCWGG 2 cut(s) 123, 226
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 2 cut(s) 123, 226
PspN4I GGNNCC 2 cut(s) 23, 1245
PspPI GGNCC 5 cut(s) 121, 503, 576, 958, 1023
PstI CTGCAG 1 cut(s) 1179
PsuI RGATCY 1 cut(s) 382
PsyI GACNNNGTC 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 1174
RsaI GTAC 3 cut(s) 413, 781, 806
RsaNI GTAC 3 cut(s) 412, 780, 805
RseI CAYNNNNRTG 1 cut(s) 545
SaqAI TTAA 8 cut(s) 372, 434, 449, 498, 599, 636, 989, 1167
SatI GCNGC 7 cut(s) 36, 51, 120, 153, 1172, 1175, 1178
Sau3AI GATC 7 cut(s) 16, 108, 181, 196, 201, 274, 382
Sau96I GGNCC 5 cut(s) 121, 503, 576, 958, 1023
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 2 cut(s) 125, 228
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 4 cut(s) 257, 308, 961, 1093
SfcI CTRYAG 1 cut(s) 1175
Sfr274I CTCGAG 1 cut(s) 752
SfuI TTCGAA 1 cut(s) 388
SinI GGWCC 2 cut(s) 503, 958
SlaI CTCGAG 1 cut(s) 752
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
SsiI CCGC 7 cut(s) 25, 33, 36, 51, 119, 270, 939
SspI AATATT 2 cut(s) 1034, 1214
SspMI CTAG 6 cut(s) 116, 615, 884, 920, 1161, 1271
StyD4I CCNGG 2 cut(s) 123, 226
StyI CCWWGG 3 cut(s) 663, 699, 954
TaaI ACNGT 4 cut(s) 136, 254, 503, 689
TaiI ACGT 3 cut(s) 81, 235, 330
TatI WGTACW 1 cut(s) 804
TauI GCSGC 3 cut(s) 38, 53, 122
TfiI GAWTC 3 cut(s) 301, 748, 1258
Tru1I TTAA 8 cut(s) 372, 434, 449, 498, 599, 636, 989, 1167
Tru9I TTAA 8 cut(s) 372, 434, 449, 498, 599, 636, 989, 1167
TseI GCWGC 4 cut(s) 152, 1171, 1174, 1177
TspDTI ATGAA 2 cut(s) 740, 1218
Tth111I GACNNNGTC 1 cut(s) 77
Van91I CCANNNNNTGG 1 cut(s) 967
VpaK11BI GGWCC 2 cut(s) 503, 958
XagI CCTNNNNNAGG 1 cut(s) 542
XapI RAATTY 5 cut(s) 391, 460, 551, 675, 727
XbaI TCTAGA 2 cut(s) 919, 1270
XceI RCATGY 2 cut(s) 836, 882
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XhoI CTCGAG 1 cut(s) 752
XspI CTAG 6 cut(s) 116, 615, 884, 920, 1161, 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.