Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Forward (+)

4976765 .. 4977205

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05982.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTGGAGAAGGAAATGGTACAAAACCCTAAGGAGCACAGAAGAAGATGATGAAACCGCTGCCACCTCCGCCAACACAATCCCTTACTTACCTGACAACGTCATCGAGAAGATCCTCTCCTTCCTTCCAGTCAGAGACGCCGCTGTGGCAACCGCCGTTTCGAAGCAGTGGAGATCCCTCTGGCCTTCCTTCCCTGTTATCGATATCGAAGAGAAACGCTTTCGCGAACCTCGATGTTTCGTCGACTTCTTGCGCTACTCTCTCAGACGATGCAGGGGTCAGAGGCACTTGGACAAGTTGAGGATTCGAGCCAACCTCCAATACGGCTACTTTTTGGTAAGAGAATGGGTCGATTTTGCAATTGAGAGGTGCGTCAAAGAGTTATATCTTCAGGATAATAATAAATTGCATCAAAACTTGCTGATTACCCATGACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

147

Amino Acids

17.62

Weight (kDa)

9.24

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	28 - 60	1e-06	F-box-like
F-box	PF00646	30 - 65	1.9e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	225
AciI	CCGC	4 cut(s)	57, 69, 141, 153
AclWI	GGATC	2 cut(s)	106, 168
AcuI	CTGAAG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	2 cut(s)	106, 168
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	255
AsuII	TTCGAA	1 cut(s)	161
AxyI	CCTNAGG	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	46
BceAI	ACGGC	2 cut(s)	140, 340
BcoDI	GTCTC	1 cut(s)	129
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	2 cut(s)	60, 141
BlsI	GCNGC	2 cut(s)	61, 142
BmsI	GCATC	2 cut(s)	260, 418
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
Bpu14I	TTCGAA	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	128
Bse21I	CCTNAGG	1 cut(s)	29
BseCI	ATCGAT	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	184
BshVI	ATCGAT	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	129
BsmBI	CGTCTC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	184
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	111, 173
Bsp68I	TCGCGA	1 cut(s)	225
BspACI	CCGC	4 cut(s)	57, 69, 141, 153
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	276
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	225
BspPI	GGATC	2 cut(s)	106, 168
BspT104I	TTCGAA	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	128
BssMI	GATC	2 cut(s)	111, 173
BssNI	GRCGYC	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	138
BstBI	TTCGAA	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	29, 263
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	2 cut(s)	114, 176
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	2 cut(s)	111, 173
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 146
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	46
BstX2I	RGATCY	2 cut(s)	111, 173
BstYI	RGATCY	2 cut(s)	111, 173
Bsu15I	ATCGAT	1 cut(s)	201
Bsu36I	CCTNAGG	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	184
BsuTUI	ATCGAT	1 cut(s)	201
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
BtuMI	TCGCGA	1 cut(s)	225
CfoI	GCGC	1 cut(s)	255
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	2 cut(s)	146, 361
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	431
CviJI	RGCY	3 cut(s)	184, 311, 327
CviKI_1	RGCY	3 cut(s)	184, 311, 327
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	29, 263
DpnI	GATC	2 cut(s)	113, 175
DpnII	GATC	2 cut(s)	111, 173
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	58
Eco32I	GATATC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	374
Eco81I	CCTNAGG	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	1 cut(s)	434
FaiI	YATR	2 cut(s)	385, 432
FatI	CATG	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	60, 141
Fsp4HI	GCNGC	2 cut(s)	60, 141
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	60, 141
HaeIII	GGCC	1 cut(s)	184
HgaI	GACGC	2 cut(s)	146, 361
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	434
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	134, 266, 282
Hpy188III	TCNNGA	3 cut(s)	106, 224, 392
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	5 cut(s)	3, 130, 134, 195, 199
HpyCH4IV	ACGT	2 cut(s)	99, 435
HpyCH4V	TGCA	3 cut(s)	273, 359, 409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 146
HpyF3I	CTNAG	2 cut(s)	29, 263
HpySE526I	ACGT	2 cut(s)	99, 435
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	434
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	111, 173
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	6 cut(s)	105, 141, 166, 207, 259, 377
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	2 cut(s)	260, 418
MaeII	ACGT	2 cut(s)	99, 435
MalI	GATC	2 cut(s)	113, 175
MboI	GATC	2 cut(s)	111, 173
MboII	GAAGA	5 cut(s)	53, 56, 121, 221, 380
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	2 cut(s)	111, 173
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	360, 404
MnlI	CCTC	8 cut(s)	76, 125, 188, 240, 276, 294, 326, 360
MseI	TTAA	1 cut(s)	439
MspA1I	CMGCKG	2 cut(s)	59, 143
MunI	CAATTG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	68, 146
NdeII	GATC	2 cut(s)	111, 173
NlaIII	CATG	1 cut(s)	434
NruI	TCGCGA	1 cut(s)	225
NspV	TTCGAA	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	304
PflFI	GACNNNGTC	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	61, 142
PsuI	RGATCY	2 cut(s)	111, 173
PsyI	GACNNNGTC	1 cut(s)	98
RruI	TCGCGA	1 cut(s)	225
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	2 cut(s)	60, 141
Sau3AI	GATC	2 cut(s)	111, 173
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	7 cut(s)	68, 94, 102, 232, 318, 371, 438
SfaNI	GCATC	2 cut(s)	260, 418
SfuI	TTCGAA	1 cut(s)	161
Sse9I	AATT	2 cut(s)	360, 404
SsiI	CCGC	4 cut(s)	57, 69, 141, 153
TaiI	ACGT	2 cut(s)	102, 438
TaqI	TCGA	8 cut(s)	105, 161, 201, 207, 232, 243, 307, 351
TasI	AATT	2 cut(s)	360, 404
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TscAI	CASTG	1 cut(s)	173
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	173
Tth111I	GACNNNGTC	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.