Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003459

Physical Location & Seq

Genomic Coordinates Reverse (-)

56418019 .. 56418861

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014692

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAGCAGACGGATCAAAACCCTAATGAGCACAGAGAATGATCGGAACCGCCAAACCGCCGCAGCCAGCTCCGTCACCACAATTCCTTACTTACCTGACAACGTCATCGAAAAAGTCCTCTCCTTCCTTCCGATCAATCTAGCGGCCCAGGCGAACACCGTTTCGAAGCAATGGGCAGCCCTGTGGCCTTCCTTCCCTGTAATCGATCTCGACGGGGCCGATCCGATCAATTGCGAACTCTATATCGAACCTGGACGTTTCCTCAGCTTCTTGCACCAGTCTCTCAGACGATGCAGGGATCAGAGGCTCTTGGACAAGTTGAGGATTCGAGCCAACCTTCGATACGCCGGCGTTTTGGTAGATGAATGGGTTGATTTTGCAATTGAGAGGTGTGTCAAAGAGTTAGATCTTCGAAATTTGGGTGAGAATAGGTACTGCCTCATAGGGCATAACGTTTTAACTCTGAAATCTTTAACTAGTCTGAATTTGGAGAATGTGAGACTGTATGCAAGTTCTGGAATTAATGGTCCTGTTAGCCTACCCTTACTGAAAACCATGTCACTCACAGAGTTGGAAGTTTTCGACGATCAGGAGGACAGGGCCATTTGGACCATCCCCAGCTTAATTTCGGGGTGTCCTAGCATCGAGCAATTGTCAATTAAGAAATGTAAGCTTGGCTACTCCACCATGGAGTTTGAAATTTCGAGTTACAGTCTCAAATCCTTGGAAATTATGCATTGCCATTCTATGAATTTCGAAGTTACGGCTAAGAATCTCGAGTCTTTTACATTCTATTCGGATTGTACCATAAGACTATGTACTTGTGGGAATGTGATAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_2

Protein Analysis

281

Amino Acids

31.74

Weight (kDa)

6.13

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	118 - 274	5.4e-08	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	120 - 270	9.9e-12	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003459)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05961 FvH4_2g05970 FvH4_2g05980 FvH4_2g05982 FvH4_2g05983 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070 FvH4_2g06070
prunus_persica	Prupe.8G124900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257151 RchiOBHm_Chr6g0257161 RchiOBHm_Chr6g0257411 RchiOBHm_Chr6g0257421
rosa_laevigata	RLG00000014679 RLG00000014691 RLG00000014692
rosa_multiflora	Rmu_co8284495.1_g000001 Rmu_sc0000820.1_g000043 Rmu_sc0001228.1_g000010 Rmu_sc0001228.1_g000015
rosa_roxburghii	Rroxscaffold_7G00208640
rosa_rugosa	Rorug05G0572700 Rorug05G0573000 Rorug05G0573100 Rorug05G0574400
rosa_samantha	Rh6AG090200 Rh6AG092400 Rh6AG092500 Rh6BG081700 Rh6BG083200 Rh6BG083400 Rh6CG080000 Rh6CG080100
rosa_wichuraiana	Rw6G007880 Rw6G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	49, 57, 60, 143
AclI	AACGTT	1 cut(s)	453
AclWI	GGATC	3 cut(s)	20, 215, 306
AcsI	RAATTY	4 cut(s)	415, 484, 699, 751
AfaI	GTAC	3 cut(s)	434, 805, 820
AgsI	TTSAA	1 cut(s)	698
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	2 cut(s)	147, 250
AluBI	AGCT	4 cut(s)	69, 267, 621, 673
AluI	AGCT	4 cut(s)	69, 267, 621, 673
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	3 cut(s)	285, 493, 719
AlwI	GGATC	3 cut(s)	20, 215, 306
Ama87I	CYCGRG	1 cut(s)	776
AoxI	GGCC	4 cut(s)	144, 185, 216, 600
ApeKI	GCWGC	2 cut(s)	62, 176
ApoI	RAATTY	4 cut(s)	415, 484, 699, 751
AseI	ATTAAT	1 cut(s)	522
AspS9I	GGNCC	5 cut(s)	145, 216, 527, 600, 609
AsuHPI	GGTGA	2 cut(s)	67, 434
AsuII	TTCGAA	3 cut(s)	164, 412, 756
AvaI	CYCGRG	1 cut(s)	776
AvaII	GGWCC	2 cut(s)	527, 609
Bbv12I	GWGCWC	1 cut(s)	32
BbvCI	CCTCAGC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	74, 188
BccI	CCATC	1 cut(s)	620
BceAI	ACGGC	1 cut(s)	780
BciT130I	CCWGG	2 cut(s)	149, 252
BcoDI	GTCTC	3 cut(s)	285, 493, 719
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	3 cut(s)	140, 477, 639
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	4 cut(s)	60, 63, 144, 177
BlsI	GCNGC	4 cut(s)	61, 64, 145, 178
Bme1390I	CCNGG	2 cut(s)	149, 252
Bme18I	GGWCC	2 cut(s)	527, 609
BmeT110I	CYCGRG	1 cut(s)	776
BmgT120I	GGNCC	5 cut(s)	145, 216, 527, 600, 609
BmiI	GGNNCC	2 cut(s)	47, 217
BmrFI	CCNGG	2 cut(s)	149, 252
BmsI	GCATC	2 cut(s)	281, 651
Bpu10I	CCTNAGC	1 cut(s)	263
Bpu14I	TTCGAA	3 cut(s)	164, 412, 756
Bsa29I	ATCGAT	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	147, 687, 723
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	2 cut(s)	176, 736
BseBI	CCWGG	2 cut(s)	149, 252
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	3 cut(s)	147, 687, 723
BseGI	GGATG	1 cut(s)	612
BseMI	GCAATG	2 cut(s)	176, 736
BseMII	CTCAG	2 cut(s)	277, 298
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	74, 188
BseYI	CCCAGC	1 cut(s)	617
BshFI	GGCC	4 cut(s)	146, 187, 218, 602
BshVI	ATCGAT	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	776
BsiSI	CCGG	1 cut(s)	348
BsmAI	GTCTC	3 cut(s)	285, 493, 719
BsnI	GGCC	4 cut(s)	146, 187, 218, 602
BsoBI	CYCGRG	1 cut(s)	776
Bsp119I	TTCGAA	3 cut(s)	164, 412, 756
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	9 cut(s)	12, 40, 132, 205, 220, 225, 298, 406, 586
Bsp19I	CCATGG	1 cut(s)	687
BspACI	CCGC	4 cut(s)	49, 57, 60, 143
BspANI	GGCC	4 cut(s)	146, 187, 218, 602
BspCNI	CTCAG	2 cut(s)	276, 297
BspDI	ATCGAT	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	47, 217
BspPI	GGATC	3 cut(s)	20, 215, 306
BspT104I	TTCGAA	3 cut(s)	164, 412, 756
BsrDI	GCAATG	2 cut(s)	176, 736
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	3 cut(s)	147, 687, 723
BssMI	GATC	9 cut(s)	12, 40, 132, 205, 220, 225, 298, 406, 586
BssT1I	CCWWGG	2 cut(s)	687, 723
Bst2UI	CCWGG	2 cut(s)	149, 252
Bst4CI	ACNGT	3 cut(s)	160, 504, 713
BstBI	TTCGAA	3 cut(s)	164, 412, 756
BstC8I	GCNNGC	2 cut(s)	67, 349
BstDEI	CTNAG	3 cut(s)	263, 284, 768
BstDSI	CCRYGG	1 cut(s)	687
BstF5I	GGATG	1 cut(s)	612
BstKTI	GATC	9 cut(s)	15, 43, 135, 208, 223, 228, 301, 409, 589
BstMAI	GTCTC	3 cut(s)	285, 493, 719
BstMBI	GATC	9 cut(s)	12, 40, 132, 205, 220, 225, 298, 406, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	2 cut(s)	149, 252
BstSCI	CCNGG	2 cut(s)	147, 250
BstV1I	GCAGC	2 cut(s)	74, 188
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	204
BsuRI	GGCC	4 cut(s)	146, 187, 218, 602
BsuTUI	ATCGAT	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	687
BtsCI	GGATG	1 cut(s)	612
Cac8I	GCNNGC	2 cut(s)	67, 349
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	5 cut(s)	145, 216, 527, 600, 609
ClaI	ATCGAT	1 cut(s)	204
Csp6I	GTAC	3 cut(s)	433, 804, 819
CviAII	CATG	2 cut(s)	556, 688
CviQI	GTAC	3 cut(s)	433, 804, 819
DdeI	CTNAG	3 cut(s)	263, 284, 768
DpnI	GATC	9 cut(s)	14, 42, 134, 207, 222, 227, 300, 408, 588
DpnII	GATC	9 cut(s)	12, 40, 132, 205, 220, 225, 298, 406, 586
Eco130I	CCWWGG	2 cut(s)	687, 723
Eco47I	GGWCC	2 cut(s)	527, 609
Eco88I	CYCGRG	1 cut(s)	776
EcoRII	CCWGG	2 cut(s)	147, 250
EcoT14I	CCWWGG	2 cut(s)	687, 723
EcoT22I	ATGCAT	1 cut(s)	738
ErhI	CCWWGG	2 cut(s)	687, 723
FaeI	CATG	2 cut(s)	559, 691
FatI	CATG	2 cut(s)	555, 687
Fnu4HI	GCNGC	4 cut(s)	60, 63, 144, 177
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	4 cut(s)	60, 63, 144, 177
FspBI	CTAG	3 cut(s)	140, 477, 639
GluI	GCNGC	4 cut(s)	60, 63, 144, 177
GsaI	CCCAGC	1 cut(s)	621
HaeIII	GGCC	4 cut(s)	146, 187, 218, 602
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	2 cut(s)	559, 691
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	3 cut(s)	325, 772, 779
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	2 cut(s)	67, 434
Hpy188I	TCNGA	8 cut(s)	45, 132, 225, 287, 303, 465, 483, 799
Hpy188III	TCNNGA	4 cut(s)	209, 516, 590, 776
Hpy99I	CGWCG	2 cut(s)	215, 587
HpyAV	CCTTC	5 cut(s)	133, 137, 198, 202, 347
HpyCH4III	ACNGT	3 cut(s)	160, 504, 713
HpyCH4IV	ACGT	3 cut(s)	102, 256, 453
HpyCH4V	TGCA	5 cut(s)	274, 294, 380, 509, 736
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	3 cut(s)	263, 284, 768
HpySE526I	ACGT	3 cut(s)	102, 256, 453
Hsp92II	CATG	2 cut(s)	559, 691
KroI	GCCGGC	1 cut(s)	347
KroNI	GCCGGC	1 cut(s)	349
Kzo9I	GATC	9 cut(s)	12, 40, 132, 205, 220, 225, 298, 406, 586
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	2 cut(s)	74, 188
LweI	GCATC	2 cut(s)	281, 651
MaeI	CTAG	3 cut(s)	140, 477, 639
MaeII	ACGT	3 cut(s)	102, 256, 453
MaeIII	GTNAC	4 cut(s)	73, 558, 707, 760
MalI	GATC	9 cut(s)	14, 42, 134, 207, 222, 227, 300, 408, 588
MboI	GATC	9 cut(s)	12, 40, 132, 205, 220, 225, 298, 406, 586
MboII	GAAGA	1 cut(s)	401
MfeI	CAATTG	3 cut(s)	229, 381, 650
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	788
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	7 cut(s)	128, 272, 297, 315, 381, 449, 586
Mph1103I	ATGCAT	1 cut(s)	738
MreI	CGCCGGCG	1 cut(s)	347
MroNI	GCCGGC	1 cut(s)	347
MseI	TTAA	5 cut(s)	458, 473, 522, 623, 660
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	149, 252
MunI	CAATTG	3 cut(s)	229, 381, 650
MvaI	CCWGG	2 cut(s)	149, 252
MwoI	GCNNNNNNNGC	1 cut(s)	149
NaeI	GCCGGC	1 cut(s)	349
NcoI	CCATGG	1 cut(s)	687
NdeII	GATC	9 cut(s)	12, 40, 132, 205, 220, 225, 298, 406, 586
NgoMIV	GCCGGC	1 cut(s)	347
NlaIII	CATG	2 cut(s)	559, 691
NlaIV	GGNNCC	2 cut(s)	47, 217
NmuCI	GTSAC	2 cut(s)	73, 558
NsiI	ATGCAT	1 cut(s)	738
NspV	TTCGAA	3 cut(s)	164, 412, 756
PaeR7I	CTCGAG	1 cut(s)	776
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	325, 772
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	61, 64, 145, 178
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
PshBI	ATTAAT	1 cut(s)	522
Psp1406I	AACGTT	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	147, 250
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	2 cut(s)	147, 250
PspN4I	GGNNCC	2 cut(s)	47, 217
PspPI	GGNCC	5 cut(s)	145, 216, 527, 600, 609
PsuI	RGATCY	1 cut(s)	406
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	3 cut(s)	434, 805, 820
RsaNI	GTAC	3 cut(s)	433, 804, 819
SaqAI	TTAA	5 cut(s)	458, 473, 522, 623, 660
SatI	GCNGC	4 cut(s)	60, 63, 144, 177
Sau3AI	GATC	9 cut(s)	12, 40, 132, 205, 220, 225, 298, 406, 586
Sau96I	GGNCC	5 cut(s)	145, 216, 527, 600, 609
SchI	GAGTC	1 cut(s)	788
ScrFI	CCNGG	2 cut(s)	149, 252
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	2 cut(s)	281, 651
Sfr274I	CTCGAG	1 cut(s)	776
SfuI	TTCGAA	3 cut(s)	164, 412, 756
SgrAI	CRCCGGYG	1 cut(s)	347
SinI	GGWCC	2 cut(s)	527, 609
SlaI	CTCGAG	1 cut(s)	776
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
SpeI	ACTAGT	1 cut(s)	476
SsiI	CCGC	4 cut(s)	49, 57, 60, 143
SspMI	CTAG	3 cut(s)	140, 477, 639
StyD4I	CCNGG	2 cut(s)	147, 250
StyI	CCWWGG	2 cut(s)	687, 723
TaaI	ACNGT	3 cut(s)	160, 504, 713
TaiI	ACGT	3 cut(s)	105, 259, 456
TatI	WGTACW	1 cut(s)	818
TauI	GCSGC	2 cut(s)	62, 146
TfiI	GAWTC	2 cut(s)	325, 772
Tru1I	TTAA	5 cut(s)	458, 473, 522, 623, 660
Tru9I	TTAA	5 cut(s)	458, 473, 522, 623, 660
TseFI	GTSAC	2 cut(s)	73, 558
TseI	GCWGC	2 cut(s)	62, 176
Tsp45I	GTSAC	2 cut(s)	73, 558
TspDTI	ATGAA	2 cut(s)	378, 764
TspGWI	ACGGA	2 cut(s)	25, 61
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	527, 609
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	4 cut(s)	415, 484, 699, 751
XhoI	CTCGAG	1 cut(s)	776
XspI	CTAG	3 cut(s)	140, 477, 639
Zsp2I	ATGCAT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.