Rorug05G0573100

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003459
Physical Location & Seq
Forward (+)
76774150 .. 76776987
2838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0573100.1

Sequence Viewer

Length: 918 bp
ATGAAGGTGGCTCTCTCTCTCTCTCTCTGCGGACTCCGGCACAGCCGCACGACCTCTCTCCTTGACTTACTCTCTCTGTCTCTCATGAATTTTTGGGTTGAATTGAATTTCTGGGTTCCCTGTTTTCAATCGATCTGTTCTGGGTTTACAATCGATCTGTGTCTCACTCTTTCATTAATTTCTTGGTTTTCAGTTGAAGTATCGGGCTCGTGGTCAACTGATCTTGCTCTTGGAGACTTAGTTCGATTCAGAAATTTTCAAGCTCGGATACAAGAGTATGTTGAAGCTGCAAGTCTGGGTTTGATCGATTGCATGAAGTTGGTACGCTTGCCCAGGTATCAAGTTGGTACTGCAAGGATGAGCCAGGGACTGATCCAAGTTTGGTATCAGATTTCTAGTATCCAAGGCGACCAAGTAGTGCTTATTGGTCATAGGCGACTTCGAATTATAGAGATGGTTGATGAGGATCCCCTGACTGTAAAAGTTGACCATCTCAAGAATAAACCATATAACAAGGATGATGATGTCATAAAGGCTACGTCATTTGAGGTTATAGCAACCTTAAGAGATGTTCTGAAGACTAGTTCTCTTTGGAGAGATCATGTTCAAACATACACTCAGCATATAGGTGACTTTAATTTTCCGAGGTTAGCAGATTTTGGAGCTGCAATATCTGGTGCAAACAAATTGCAGTGCCAGCAAGTGCTTGAAGAGCTAGACGTGTACAAACGTTTAAATCTTACACTAGAATTGGTGAAGAAAGAGATGGAAATCAGCAAGCTTCAGGAAACTATTGCAAAAGCGATTGAAGAGAAGATAAGTCGTGAGCAACGCCGCTACTTGTTGAATGAGCAGCTTAAAGCCATAAAGAAGGAACTGGGATTAGAGACAGATGACAAGACAACACTTTCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

305

Amino Acids

34.86

Weight (kDa)

6.54

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 137 - 254 6.9e-18 ATP-dependent protease La (LON) substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 30, 46, 835
AclI AACGTT 1 cut(s) 730
AclWI GGATC 3 cut(s) 367, 461, 474
AcsI RAATTY 3 cut(s) 88, 106, 253
AcuI CTGAAG 2 cut(s) 596, 767
AfaI GTAC 3 cut(s) 324, 349, 725
AflII CTTAAG 1 cut(s) 562
AflIII ACRYGT 1 cut(s) 720
AhlI ACTAGT 1 cut(s) 581
AjiI CACGTC 1 cut(s) 721
AjnI CCWGG 2 cut(s) 332, 363
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 6 cut(s) 263, 287, 665, 715, 781, 856
AluI AGCT 6 cut(s) 263, 287, 665, 715, 781, 856
Alw26I GTCTC 4 cut(s) 84, 167, 228, 881
AlwI GGATC 3 cut(s) 367, 461, 474
AlwNI CAGNNNCTG 1 cut(s) 370
ApeKI GCWGC 3 cut(s) 287, 665, 853
ApoI RAATTY 3 cut(s) 88, 106, 253
AseI ATTAAT 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 641, 766
AsuII TTCGAA 1 cut(s) 442
BaeI ACNNNNGTAYC 2 cut(s) 260, 293
BamHI GGATCC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 209
BauI CACGAG 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 584
BbvI GCAGC 3 cut(s) 274, 652, 865
BccI CCATC 3 cut(s) 448, 498, 760
BciT130I CCWGG 2 cut(s) 334, 365
BciVI GTATCC 2 cut(s) 261, 410
BcoDI GTCTC 4 cut(s) 84, 167, 228, 881
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 4 cut(s) 396, 582, 716, 746
BfrI CTTAAG 1 cut(s) 562
BfuI GTATCC 2 cut(s) 261, 410
BisI GCNGC 5 cut(s) 46, 288, 666, 835, 854
BlsI GCNGC 5 cut(s) 47, 289, 667, 836, 855
Bme1390I CCNGG 2 cut(s) 334, 365
BmgBI CACGTC 1 cut(s) 721
BmiI GGNNCC 2 cut(s) 117, 468
BmrFI CCNGG 2 cut(s) 334, 365
BmrI ACTGGG 1 cut(s) 887
BmuI ACTGGG 1 cut(s) 887
BpiI GAAGAC 1 cut(s) 584
Bpu14I TTCGAA 1 cut(s) 442
BpuEI CTTGAG 1 cut(s) 479
Bsa29I ATCGAT 3 cut(s) 131, 153, 306
BsaBI GATNNNNATC 2 cut(s) 465, 770
BsaJI CCNNGG 4 cut(s) 332, 364, 403, 644
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bse1I ACTGG 1 cut(s) 882
Bse8I GATNNNNATC 2 cut(s) 465, 770
BseBI CCWGG 2 cut(s) 334, 365
BseCI ATCGAT 3 cut(s) 131, 153, 306
BseDI CCNNGG 4 cut(s) 332, 364, 403, 644
BseGI GGATG 2 cut(s) 363, 523
BseJI GATNNNNATC 2 cut(s) 465, 770
BseMII CTCAG 1 cut(s) 632
BseNI ACTGG 1 cut(s) 882
BseXI GCAGC 3 cut(s) 274, 652, 865
BshVI ATCGAT 3 cut(s) 131, 153, 306
BsiSI CCGG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 381
BsmAI GTCTC 4 cut(s) 84, 167, 228, 881
BsmFI GGGAC 1 cut(s) 381
Bsp119I TTCGAA 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 723
Bsp143I GATC 7 cut(s) 132, 154, 220, 303, 372, 466, 598
BspACI CCGC 3 cut(s) 30, 46, 835
BspCNI CTCAG 1 cut(s) 631
BspDI ATCGAT 3 cut(s) 131, 153, 306
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 117, 468
BspPI GGATC 3 cut(s) 367, 461, 474
BspQI GCTCTTC 1 cut(s) 705
BspT104I TTCGAA 1 cut(s) 442
BspTI CTTAAG 1 cut(s) 562
BsrGI TGTACA 1 cut(s) 723
BsrI ACTGG 1 cut(s) 882
BssECI CCNNGG 4 cut(s) 332, 364, 403, 644
BssMI GATC 7 cut(s) 132, 154, 220, 303, 372, 466, 598
BssSI CACGAG 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 403
Bst2BI CACGAG 1 cut(s) 208
Bst2UI CCWGG 2 cut(s) 334, 365
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 2 cut(s) 705, 804
BstAFI CTTAAG 1 cut(s) 562
BstAUI TGTACA 1 cut(s) 723
BstBI TTCGAA 1 cut(s) 442
BstC8I GCNNGC 3 cut(s) 329, 698, 779
BstDEI CTNAG 2 cut(s) 238, 618
BstF5I GGATG 2 cut(s) 363, 523
BstKTI GATC 7 cut(s) 135, 157, 223, 306, 375, 469, 601
BstMAI GTCTC 4 cut(s) 84, 167, 228, 881
BstMBI GATC 7 cut(s) 132, 154, 220, 303, 372, 466, 598
BstMWI GCNNNNNNNGC 2 cut(s) 697, 712
BstNI CCWGG 2 cut(s) 334, 365
BstSCI CCNGG 2 cut(s) 332, 363
BstV1I GCAGC 3 cut(s) 274, 652, 865
BstV2I GAAGAC 1 cut(s) 584
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
Bsu15I ATCGAT 3 cut(s) 131, 153, 306
BsuI GTATCC 2 cut(s) 261, 410
BsuTUI ATCGAT 3 cut(s) 131, 153, 306
BtrI CACGTC 1 cut(s) 721
BtsCI GGATG 2 cut(s) 363, 523
BtsI GCAGTG 1 cut(s) 698
BtsIMutI CAGTG 1 cut(s) 698
Cac8I GCNNGC 3 cut(s) 329, 698, 779
CaiI CAGNNNCTG 1 cut(s) 370
CciI TCATGA 1 cut(s) 84
ClaI ATCGAT 3 cut(s) 131, 153, 306
Csp6I GTAC 3 cut(s) 323, 348, 724
CviAII CATG 3 cut(s) 85, 313, 602
CviQI GTAC 3 cut(s) 323, 348, 724
DdeI CTNAG 2 cut(s) 238, 618
DpnI GATC 7 cut(s) 134, 156, 222, 305, 374, 468, 600
DpnII GATC 7 cut(s) 132, 154, 220, 303, 372, 466, 598
DraI TTTAAA 1 cut(s) 735
Eam1104I CTCTTC 2 cut(s) 705, 804
EarI CTCTTC 2 cut(s) 705, 804
Eco130I CCWWGG 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 209
Eco57I CTGAAG 2 cut(s) 596, 767
EcoRII CCWGG 2 cut(s) 332, 363
EcoT14I CCWWGG 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 3 cut(s) 88, 316, 605
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 1 cut(s) 381
FatI CATG 3 cut(s) 84, 312, 601
Fnu4HI GCNGC 5 cut(s) 46, 288, 666, 835, 854
FokI GGATG 2 cut(s) 370, 530
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 5 cut(s) 46, 288, 666, 835, 854
FspBI CTAG 4 cut(s) 396, 582, 716, 746
GluI GCNGC 5 cut(s) 46, 288, 666, 835, 854
HapII CCGG 1 cut(s) 37
Hin1II CATG 3 cut(s) 88, 316, 605
HincII GTYRAC 2 cut(s) 216, 487
HindII GTYRAC 2 cut(s) 216, 487
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 2 cut(s) 33, 246
HpaII CCGG 1 cut(s) 37
HphI GGTGA 2 cut(s) 641, 766
Hpy166II GTNNAC 4 cut(s) 147, 216, 487, 724
Hpy188I TCNGA 5 cut(s) 251, 267, 390, 576, 645
Hpy188III TCNNGA 4 cut(s) 85, 496, 785, 824
Hpy8I GTNNAC 4 cut(s) 147, 216, 487, 724
HpyAV CCTTC 1 cut(s) 865
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 3 cut(s) 539, 720, 730
HpyCH4V TGCA 7 cut(s) 290, 312, 353, 668, 680, 691, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 697, 712
HpyF3I CTNAG 2 cut(s) 238, 618
HpySE526I ACGT 3 cut(s) 539, 720, 730
Hsp92II CATG 3 cut(s) 88, 316, 605
Kzo9I GATC 7 cut(s) 132, 154, 220, 303, 372, 466, 598
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 1 cut(s) 662
Lsp1109I GCAGC 3 cut(s) 274, 652, 865
MaeI CTAG 4 cut(s) 396, 582, 716, 746
MaeII ACGT 3 cut(s) 539, 720, 730
MaeIII GTNAC 1 cut(s) 629
MalI GATC 7 cut(s) 134, 156, 222, 305, 374, 468, 600
MboI GATC 7 cut(s) 132, 154, 220, 303, 372, 466, 598
MboII GAAGA 5 cut(s) 589, 722, 769, 821, 826
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 9 cut(s) 88, 101, 106, 177, 253, 444, 637, 686, 749
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 4 cut(s) 64, 457, 541, 639
MseI TTAA 5 cut(s) 176, 563, 636, 734, 858
MslI CAYNNNNRTG 1 cut(s) 627
MspCI CTTAAG 1 cut(s) 562
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 2 cut(s) 334, 365
MvaI CCWGG 2 cut(s) 334, 365
MwoI GCNNNNNNNGC 2 cut(s) 697, 712
NdeII GATC 7 cut(s) 132, 154, 220, 303, 372, 466, 598
NlaIII CATG 3 cut(s) 88, 316, 605
NlaIV GGNNCC 2 cut(s) 117, 468
NmuCI GTSAC 1 cut(s) 629
NspV TTCGAA 1 cut(s) 442
PagI TCATGA 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 705
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 5 cut(s) 47, 289, 667, 836, 855
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PshBI ATTAAT 1 cut(s) 176
Psp1406I AACGTT 1 cut(s) 730
Psp6I CCWGG 2 cut(s) 332, 363
PspGI CCWGG 2 cut(s) 332, 363
PspN4I GGNNCC 2 cut(s) 117, 468
PstNI CAGNNNCTG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 3 cut(s) 324, 349, 725
RsaNI GTAC 3 cut(s) 323, 348, 724
RseI CAYNNNNRTG 1 cut(s) 627
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 5 cut(s) 176, 563, 636, 734, 858
SatI GCNGC 5 cut(s) 46, 288, 666, 835, 854
Sau3AI GATC 7 cut(s) 132, 154, 220, 303, 372, 466, 598
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 2 cut(s) 334, 365
SduI GDGCHC 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 2 cut(s) 494, 562
SmoI CTYRAG 2 cut(s) 494, 562
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 9 cut(s) 88, 101, 106, 177, 253, 444, 637, 686, 749
SsiI CCGC 3 cut(s) 30, 46, 835
SspMI CTAG 4 cut(s) 396, 582, 716, 746
StyD4I CCNGG 2 cut(s) 332, 363
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 3 cut(s) 542, 723, 733
TaqI TCGA 5 cut(s) 131, 153, 244, 306, 442
TasI AATT 9 cut(s) 88, 101, 106, 177, 253, 444, 637, 686, 749
TatI WGTACW 1 cut(s) 723
TauI GCSGC 2 cut(s) 48, 837
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 5 cut(s) 176, 563, 636, 734, 858
Tru9I TTAA 5 cut(s) 176, 563, 636, 734, 858
TscAI CASTG 1 cut(s) 698
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 3 cut(s) 287, 665, 853
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 4 cut(s) 17, 101, 162, 329
TspRI CASTG 1 cut(s) 698
Vha464I CTTAAG 1 cut(s) 562
VspI ATTAAT 1 cut(s) 176
XapI RAATTY 3 cut(s) 88, 106, 253
XspI CTAG 4 cut(s) 396, 582, 716, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.